Yi-Ju Chen (Yu-Ju Chen)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 43

Top Venues

Journal of proteome research

Analytical chemistry

Journal of the American Society for Mass Spectrometry

Nature communications

Institute of Chemistry Academia Sinica

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institute of Chemistry Academia Sinica

Taiwan

Prof.

Publications

Tiara Pradita, Yi-Ju Chen, Tung-Hung Su, Kun-Hao Chang, Pei-Jer Chen, Yi-Ju Chen
Data Independent Acquisition Mass Spectrometry Enhanced Personalized Glycosylation Profiling of Haptoglobin in Hepatocellular Carcinoma. Journal of proteome research (2024)
Ryota Tomioka, Ayana Tomioka, Kosuke Ogata, Hsin-Ju Chan, Li-Yu Chen, Ulises H Guzman, Yue Xuan, Jesper Velgaard Olsen, Yi-Ju Chen, Yasushi Ishihama
Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation. Journal of the American Society for Mass Spectrometry (2024)
Tiara Pradita, Yi-Ju Chen, Tung-Hung Su, Kun-Hao Chang, Pei-Jer Chen, Yi-Ju Chen
Data Independent Acquisition Mass Spectrometry Enhanced Personalized Glycosylation Profiling of Haptoglobin in Hepatocellular Carcinoma. Journal of proteome research (2024)
Tiara Pradita, Yi-Ju Chen, Tung-Hung Su, Kun-Hao Chang, Pei-Jer Chen, Yi-Ju Chen
Data Independent Acquisition Mass Spectrometry Enhanced Personalized Glycosylation Profiling of Haptoglobin in Hepatocellular Carcinoma. Journal of proteome research 23 (8) (2024)
Gul Muneer, Ciao-Syuan Chen, Tzu-Tsung Lee, Bo-Yu Chen, Yi-Ju Chen
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics. Journal of proteome research 23 (8) (2024)
Tiara Pradita, Yi-Ju Chen, Tung-Hung Su, Kun-Hao Chang, Pei-Jer Chen, Yi-Ju Chen
Data Independent Acquisition Mass Spectrometry Enhanced Personalized Glycosylation Profiling of Haptoglobin in Hepatocellular Carcinoma. Journal of proteome research 23 (8) (2024)
Ryota Tomioka, Ayana Tomioka, Kosuke Ogata, Hsin-Ju Chan, Li-Yu Chen, Ulises H Guzman, Yue Xuan, Jesper Velgaard Olsen, Yi-Ju Chen, Yasushi Ishihama
Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Ryota Tomioka, Ayana Tomioka, Kosuke Ogata, Hsin-Ju Chan, Li-Yu Chen, Ulises H Guzman, Yue Xuan, Jesper Velgaard Olsen, Yi-Ju Chen, Yasushi Ishihama
Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Gul Muneer, Ciao-Syuan Chen, Tzu-Tsung Lee, Bo-Yu Chen, Yi-Ju Chen
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics. Journal of proteome research (2024)
Gul Muneer, Ciao-Syuan Chen, Tzu-Tsung Lee, Bo-Yu Chen, Yi-Ju Chen
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics. Journal of proteome research 23 (8) (2024)
Ryota Tomioka, Ayana Tomioka, Kosuke Ogata, Hsin-Ju Chan, Li-Yu Chen, Ulises H Guzman, Yue Xuan, Jesper Velgaard Olsen, Yi-Ju Chen, Yasushi Ishihama
Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Gul Muneer, Ciao-Syuan Chen, Tzu-Tsung Lee, Bo-Yu Chen, Yi-Ju Chen
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics. Journal of proteome research 23 (8) (2024)
Tiara Pradita, Yi-Ju Chen, Tung-Hung Su, Kun-Hao Chang, Pei-Jer Chen, Yi-Ju Chen
Data Independent Acquisition Mass Spectrometry Enhanced Personalized Glycosylation Profiling of Haptoglobin in Hepatocellular Carcinoma. Journal of proteome research 23 (8) (2024)
Hao-Kang Li, Tai-Sheng Wu, Yi-Chiu Kuo, Ching-Wen Hsiao, Hsiu-Ping Yang, Chia-Yun Lee, Pei-Ju Leng, Yun-Jung Chiang, Zih-Fei Cheng, Sen-Han Yang, Yan-Liang Lin, Li-Yu Chen, Ciao-Syuan Chen, Yi-Ju Chen, Shih-Chia Hsiao, Sai-Wen Tang
A Novel Allogeneic Rituximab-Conjugated Gamma Delta T Cell Therapy for the Treatment of Relapsed/Refractory B-Cell Lymphoma. Cancers 15 (19) (2023)
Ana Martínez-Val, Kyle Fort, Claire Koenig, Leander Van der Hoeven, Giulia Franciosa, Thomas Moehring, Yasushi Ishihama, Yi-Ju Chen, Alexander A Makarov, Yue Xuan, Jesper Velgaard Olsen
Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids. Nature communications 14 (1) (2023)
Ohad Solomon, Hannah Sapir, Evgeniy Mervinetsky, Yi-Ju Chen, Assaf Friedler, Shlomo Yitzchaik
Kinase Sensing Based on Protein Interactions at the Catalytic Site. Chemistry (Weinheim an der Bergstrasse, Germany) 28 (17) (2022)
Wen-Hsin Chang, Yi-Ju Chen, Yi-Jing Hsiao, Ching-Cheng Chiang, Chia-Yu Wang, Ya-Ling Chang, Qi-Sheng Hong, Chien-Yu Lin, Shr-Uen Lin, Gee-Chen Chang, Hsuan-Yu Chen, Yi-Ju Chen, Ching-Hsien Chen, Pan-Chyr Yang, Sung-Liang Yu
Reduced symmetric dimethylation stabilizes vimentin and promotes metastasis in MTAP-deficient lung cancer. EMBO reports 23 (8) (2022)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Cecilia Lindskog, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Siqi Liu, Nuno Bandeira, Yi-Ju Chen, Tiannan Guo, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2022 Report on the Human Proteome from the HUPO Human Proteome Project. Journal of proteome research (2022)
Chi-Ya Shen, Wen-Hsin Chang, Yi-Ju Chen, Chia-Wei Weng, Prabha Regmi, Mickiela K K Kier, Kang-Yi Su, Gee-Chen Chang, Jin-Shing Chen, Yi-Ju Chen, Sung-Liang Yu
Tissue Proteogenomic Landscape Reveals the Role of Uncharacterized SEL1L3 in Progression and Immunotherapy Response in Lung Adenocarcinoma. Journal of proteome research (2022)
Ohad Solomon, Israel Alshanski, Ariel Shitrit, Yi-Ju Chen, Assaf Friedler, Shlomo Yitzchaik
Using a Single Peptide to Electrochemically Sense Multiple Kinases. Biochemistry (2022)
Sofani Tafesse Gebreyesus, Asad Ali Siyal, Reta Birhanu Kitata, Eric Sheng-Wen Chen, Bayarmaa Enkhbayar, Takashi Angata, Kuo-I Lin, Yi-Ju Chen, Hsiung-Lin Tu
Streamlined single-cell proteomics by an integrated microfluidic chip and data-independent acquisition mass spectrometry. Nature communications 13 (1) (2022)
Avijit K Adak, Kuan-Ting Huang, Chien-Yu Liao, Yuan-Jung Lee, Wen-Hua Kuo, Yi-Ren Huo, Pei-Jhen Li, Yi-Ju Chen, Bo-Shiun Chen, Yu-Ju Chen, Kuo-Chu Hwang, Wun-Shang Wayne Chang, Chun-Cheng Lin
Investigating a Boronate-Affinity-Guided Acylation Reaction for Labelling Native Antibodies. Chemistry (Weinheim an der Bergstrasse, Germany) 28 (17) (2022)
Jung-Lin Wu, Hsin-Yi Wu, Shang-Ju Wu, Ho-Yang Tsai, Shao-Hsing Weng, Kuen-Tyng Lin, Liang-In Lin, Chi-Yuan Yao, Margarita Zamanova, Yi-Yuan Lee, Takashi Angata, Hwei-Fang Tien, Yi-Ju Chen, Kuo-I Lin
Phosphoproteomics Reveals the Role of Constitutive KAP1 Phosphorylation by B-cell Receptor Signaling in Chronic Lymphocytic Leukemia. Molecular cancer research : MCR 20 (8) (2022)
Reta Birhanu Kitata, Wai-Kok Choong, Chia-Feng Tsai, Pei-Yi Lin, Bo-Shiun Chen, Yun-Chien Chang, Alexey I Nesvizhskii, Ting-Yi Sung, Yi-Ju Chen
A data-independent acquisition-based global phosphoproteomics system enables deep profiling. Nature communications 12 (1) (2021)
Yi-Ju Chen, Ta-Chi Yen, Yu-Hsien Lin, Yan-Lin Chen, Kai-Hooi Khoo, Yi-Ju Chen
ZIC-cHILIC-Based StageTip for Simultaneous Glycopeptide Enrichment and Fractionation toward Large-Scale N-Sialoglycoproteomics. Analytical chemistry 93 (48) (2021)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Young-Ki Paik, Ileana M Cristea, Fernando José Corrales, Cecilia Lindskog, Susan T Weintraub, Michael H A Roehrl, Siqi Liu, Nuno Bandeira, Sudhir Srivastava, Yi-Ju Chen, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project. Journal of proteome research 20 (12) (2021)
Ranuka T Hewage, Rou-Jie Huang, Shu-Jung Lai, Ya-Chu Lien, Shao-Hsing Weng, De-Hai Li, Yi-Ju Chen, Shih-Hsiung Wu, Rong-Jie Chein, Hsiao-Ching Lin
An Enzyme-Mediated Aza-Michael Addition Is Involved in the Biosynthesis of an Imidazoyl Hybrid Product of Conidiogenone B. Organic letters 23 (5) (2021)
Asad Ali Siyal, Eric Sheng-Wen Chen, Hsin-Ju Chan, Reta Birhanu Kitata, Jhih-Ci Yang, Hsiung-Lin Tu, Yi-Ju Chen
Sample Size-Comparable Spectral Library Enhances Data-Independent Acquisition-Based Proteome Coverage of Low-Input Cells. Analytical chemistry 93 (51) (2021)
Tiara Pradita, Yi-Ju Chen, Elias Gizaw Mernie, Sharine Noelle Bendulo, Yi-Ju Chen
ZIC-cHILIC Functionalized Magnetic Nanoparticle for Rapid and Sensitive Glycopeptide Enrichment from <1 µL Serum. Nanomaterials (Basel, Switzerland) 11 (9) (2021)
Pei-Jhen Li, Mohammad Tarigue Anwar, Chen-Yo Fan, Duane S Juang, Hsin-Yi Lin, Tsung-Che Chang, Sachin Kisan Kawade, Hsiang-Jung Chen, Yi-Ju Chen, Kui Thong Tan, Chun-Cheng Lin
Fluorescence "Turn-on" Lectin Sensors Fabricated by Ligand-Assisted Labeling Probes for Detecting Protein-Glycoprotein Interactions. Biomacromolecules 21 (2) (2020)
Chen-Yo Fan, Yi-Ren Hou, Avijit K Adak, Juanilita T Waniwan, Mira Anne C Dela Rosa, Penk Yeir Low, Takashi Angata, Kuo-Chu Hwang, Yi-Ju Chen, Chun-Cheng Lin
Boronate affinity-based photoactivatable magnetic nanoparticles for the oriented and irreversible conjugation of Fc-fused lectins and antibodies. Chemical science 10 (37) (2019)
Chih-Wei Chien, Yu-Shu Lo, Hsin-Yi Wu, Yogi Hsuan, Chi-Kang Lin, Yi-Ju Chen, Willie Lin, Chia-Li Han
Transcriptomic and Proteomic Profiling of Human Mesenchymal Stem Cell Derived from Umbilical Cord in the Study of Preterm Birth. Proteomics. Clinical applications 14 (1) (2019)
Elias Gizaw Mernie, Leta Deressa Tolesa, Ming-Jer Lee, Mei-Chun Tseng, Yi-Ju Chen
Direct Oligosaccharide Profiling Using Thin-Layer Chromatography Coupled with Ionic Liquid-Stabilized Nanomatrix-Assisted Laser Desorption-Ionization Mass Spectrometry. Analytical chemistry 91 (18) (2019)
Tung-Shing Mamie Lih, Wai-Kok Choong, Yi-Ju Chen, Ting-Yi Sung
Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis Pipeline. Journal of proteome research 17 (9) (2018)
Juanilita T Waniwan, Yi-Ju Chen, Rey Capangpangan, Shao-Hsing Weng, Yi-Ju Chen
Glycoproteomic Alterations in Drug-Resistant Nonsmall Cell Lung Cancer Cells Revealed by Lectin Magnetic Nanoprobe-Based Mass Spectrometry. Journal of proteome research 17 (11) (2018)
Mehari Muuz Weldemariam, Chia-Li Han, Faezeh Shekari, Reta Birhanu Kitata, Ching-Yu Chuang, Wei-Ting Hsu, Hung-Chih Kuo, Wai-Kok Choong, Ting-Yi Sung, Fu-Chu He, Maxey Ching Ming Chung, Ghasem Hosseini Salekdeh, Yi-Ju Chen
Subcellular Proteome Landscape of Human Embryonic Stem Cells Revealed Missing Membrane Proteins. Journal of proteome research 17 (12) (2018)
Kun-Hsing Yu, Tsung-Lu Michael Lee, Yi-Ju Chen, Christopher Ré, Samuel C Kou, Jung-Hsien Chiang, Michael Snyder, Isaac S Kohane
A Cloud-Based Metabolite and Chemical Prioritization System for the Biology/Disease-Driven Human Proteome Project. Journal of proteome research 17 (12) (2018)
Deng-Chyang Wu, Kai-Yi Wang, Sophie S W Wang, Ching-Min Huang, Yi-Wei Lee, Michael Isaac Chen, Szu-An Chuang, Shu-Hua Chen, Ying-Wei Lu, Chun-Cheng Lin, Ka-Wo Lee, Wen-Hung Hsu, Kun-Pin Wu, Yi-Ju Chen
Exploring the expression bar code of SAA variants for gastric cancer detection. Proteomics 17 (11) (2018)
Kun-Hsing Yu, Tsung-Lu Michael Lee, Chi-Shiang Wang, Yi-Ju Chen, Christopher Ré, Samuel C Kou, Jung-Hsien Chiang, Isaac S Kohane, Michael Snyder
Systematic Protein Prioritization for Targeted Proteomics Studies through Literature Mining. Journal of proteome research 17 (4) (2018)
Wai-Kok Choong, Tung-Shing Mamie Lih, Yi-Ju Chen, Ting-Yi Sung
Decoding the Effect of Isobaric Substitutions on Identifying Missing Proteins and Variant Peptides in Human Proteome. Journal of proteome research 16 (12) (2017)
Hui-Yin Chang, Ching-Tai Chen, Chu-Ling Ko, Yi-Ju Chen, Yi-Ju Chen, Wen-Lian Hsu, Chiun-Gung Juo, Ting-Yi Sung
iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm. Analytical chemistry 89 (24) (2017)
Mira Anne C Dela Rosa, Wei-Chun Chen, Yi-Ju Chen, Rofeamor P Obena, Chih-Hsiang Chang, Rey Y Capangpangan, Tung-Hung Su, Chi-Ling Chen, Pei-Jer Chen, Yi-Ju Chen
One-Pot Two-Nanoprobe Assay Uncovers Targeted Glycoprotein Biosignature. Analytical chemistry 89 (7) (2017)
Lanyi Chang, Yi-Ju Chen, Chan-Yo Fan, Chin-Ju Tang, Yi-Hsiu Chen, Penk-Yeir Low, Albert Ventura, Chun-Cheng Lin, Yi-Ju Chen, Takashi Angata
Identification of Siglec Ligands Using a Proximity Labeling Method. Journal of proteome research 16 (10) (2017)

Yi-Ju Chen.css-eqlu8i{font-size:small;padding-left:4px;} (Yu-Ju Chen)

Publication Activity (10 Years)

Top Topics

Top Venues

Yi-Ju Chen (Yu-Ju Chen)