Yousong Ding

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 38

Top Topics

Escherichia Coli

Top Venues

Organic letters

Briefings in bioinformatics

Journal of natural products

Journal of industrial microbiology & biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Dimitris Kallifidas, Dipesh Dhakal, Manyun Chen, Qi-Yin Chen, Sofia Kokkaliari, Nicole A Colon Rosa, Ranjala Ratnayake, Steven D Bruner, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Dolastatin 10 in Marine Cyanobacteria, a Prototype for Multiple Approved Cancer Drugs. Organic letters 26 (7) (2024)
Qiaosi Tang, Ranjala Ratnayake, Gustavo de Miranda Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
Morphological profiling for drug discovery in the era of deep learning. Briefings in bioinformatics 25 (4) (2024)
Qiaosi Tang, Ranjala Ratnayake, Gustavo de Miranda Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
Morphological profiling for drug discovery in the era of deep learning. Briefings in bioinformatics 25 (4) (2024)
Dimitris Kallifidas, Dipesh Dhakal, Manyun Chen, Qi-Yin Chen, Sofia Kokkaliari, Nicole A Colon Rosa, Ranjala Ratnayake, Steven D Bruner, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Dolastatin 10 in Marine Cyanobacteria, a Prototype for Multiple Approved Cancer Drugs. Organic letters (2024)
Qiaosi Tang, Ranjala Ratnayake, Gustavo de Miranda Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
Morphological profiling for drug discovery in the era of deep learning. Briefings in bioinformatics 25 (4) (2024)
Qiaosi Tang, Ranjala Ratnayake, Gustavo de Miranda Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
Morphological profiling for drug discovery in the era of deep learning. Briefings in bioinformatics 25 (4) (2024)
Dimitris Kallifidas, Dipesh Dhakal, Manyun Chen, Qi-Yin Chen, Sofia Kokkaliari, Nicole A Colon Rosa, Ranjala Ratnayake, Steven D Bruner, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Dolastatin 10 in Marine Cyanobacteria, a Prototype for Multiple Approved Cancer Drugs. Organic letters 26 (7) (2024)
Dimitris Kallifidas, Dipesh Dhakal, Manyun Chen, Qi-Yin Chen, Sofia Kokkaliari, Nicole A Colon Rosa, Ranjala Ratnayake, Steven D Bruner, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Dolastatin 10 in Marine Cyanobacteria, a Prototype for Multiple Approved Cancer Drugs. Organic letters (2024)
Qiaosi Tang, Ranjala Ratnayake, Gustavo de Miranda Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
Morphological profiling for drug discovery in the era of deep learning. Briefings in bioinformatics 25 (4) (2024)
Dimitris Kallifidas, Dipesh Dhakal, Manyun Chen, Qi-Yin Chen, Sofia Kokkaliari, Nicole A Colon Rosa, Ranjala Ratnayake, Steven D Bruner, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Dolastatin 10 in Marine Cyanobacteria, a Prototype for Multiple Approved Cancer Drugs. Organic letters 26 (7) (2024)
Ke Liu, Tao Xiao, Hongfen Yang, Manyun Chen, Qiwen Gao, Beau R Brummel, Yousong Ding, Robert William Huigens
Design, synthesis and evaluation of halogenated phenazine antibacterial prodrugs targeting nitroreductase enzymes for activation. RSC medicinal chemistry 14 (8) (2023)
Blake Ushijima, Sarath P Gunasekera, Julie L Meyer, Jessica Tittl, Kelly A Pitts, Sharon Thompson, Jennifer M Sneed, Yousong Ding, Manyun Chen, L Jay Houk, Greta Smith Aeby, Claudia C Häse, Valerie J Paul
Chemical and genomic characterization of a potential probiotic treatment for stony coral tissue loss disease. Communications biology 6 (1) (2023)
Dipesh Dhakal, Dimitris Kallifidas, Manyun Chen, Sofia Kokkaliari, Qi-Yin Chen, Valerie J Paul, Yousong Ding, Hendrik Luesch
Heterologous Production of the C33-C45 Polyketide Fragment of Anticancer Apratoxins in a Cyanobacterial Host. Organic letters (2023)
Manyun Chen, Yujia Jiang, Yousong Ding
Recent progress in unraveling the biosynthesis of natural sunscreens mycosporine-like amino acids. Journal of industrial microbiology & biotechnology (2023)
Tao Xiao, Ke Liu, Qiwen Gao, Manyun Chen, Young S Kim, Shouguang Jin, Yousong Ding, Robert William Huigens
Design, Synthesis, and Evaluation of Carbonate-Linked Halogenated Phenazine-Quinone Prodrugs with Improved Water-Solubility and Potent Antibacterial Profiles. ACS infectious diseases (2023)
Dake Liu, Thisuri N Wanniarachchi, Guangde Jiang, Gustavo Seabra, Shugeng Cao, Steven D Bruner, Yousong Ding
Biochemical and structural characterization of Haemophilus influenzae nitroreductase in metabolizing nitroimidazoles. RSC chemical biology 3 (4) (2022)
Dipesh Dhakal, Sofia Kokkaliari, Garret M Rubin, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Lyngbyastatins 1 and 3, Cytotoxic Depsipeptides from an Okeania sp. Marine Cyanobacterium. Journal of natural products (2022)
Dipesh Dhakal, Sofia Kokkaliari, Garret M Rubin, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Lyngbyastatins 1 and 3, Cytotoxic Depsipeptides from an Okeania sp. Marine Cyanobacterium. Journal of natural products 86 (1) (2022)
Dipesh Dhakal, Sofia Kokkaliari, Garret M Rubin, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Lyngbyastatins 1 and 3, Cytotoxic Depsipeptides from an Okeania sp. Marine Cyanobacterium. Journal of natural products 86 (1) (2022)
Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia Noemi Arighi, Jill Babor, Alex Bateman, Ian K Blaby, Crysten Blaby-Haas, Alan J Bridge, Stephen K Burley, Stacey Cleveland, Lucy J Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M Gyori, Christopher Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria-Jesus Martin, Claire McWhite, Gaurav D Moghe, Paul Monaghan, Anne Morgat, Christopher John Mungall, Darren A Natale, William C Nelson, Seán O'Donoghue, Christine Orengo, Katherine H O'Toole, Predrag Radivojac, Colbie Reed, Richard J Roberts, Dmitri Rodionov, Irina A Rodionova, Jeffrey D Rudolf, Lana Saleh, Gloria M Sheynkman, Francoise Thibaud-Nissen, Paul D Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter R Weigele, Valerie Wood, Elisha M Wood-Charlson, Jin Xu
A roadmap for the functional annotation of protein families: a community perspective. Database : the journal of biological databases and curation 2022 (2022)
Dipesh Dhakal, Sofia Kokkaliari, Garret M Rubin, Valerie J Paul, Yousong Ding, Hendrik Luesch
Biosynthesis of Lyngbyastatins 1 and 3, Cytotoxic Depsipeptides from an Okeania sp. Marine Cyanobacterium. Journal of natural products 86 (1) (2022)
Bryce C Askey, Dake Liu, Garret M Rubin, Andrew R Kunik, Yeong Hun Song, Yousong Ding, Jeong Im Kim
Metabolite profiling reveals organ-specific flavone accumulation in Scutellaria and identifies a scutellarin isomer isoscutellarein 8- O -β-glucuronopyranoside. Plant direct 5 (12) (2021)
Hongfen Yang, Shivani Kundra, Michaelle Chojnacki, Ke Liu, Marisa A Fuse, Yasmeen Abouelhassan, Dimitris Kallifidas, Peilan Zhang, Guangtao Huang, Shouguang Jin, Yousong Ding, Hendrik Luesch, Kyle H Rohde, Paul M Dunman, José A Lemos, Robert William Huigens
A Modular Synthetic Route Involving N-Aryl-2-nitrosoaniline Intermediates Leads to a New Series of 3-Substituted Halogenated Phenazine Antibacterial Agents. Journal of medicinal chemistry 64 (11) (2021)
Christopher P Martin, Manyun Chen, Maria F Martinez, Yousong Ding, Jonathan D Caranto
The Ferric-Superoxo Intermediate of the TxtE Nitration Pathway Resists Reduction, Facilitating Its Reaction with Nitric Oxide. Biochemistry 60 (31) (2021)
Oscar Vargas-Rodriguez, Ahmed H Badran, Kyle S Hoffman, Manyun Chen, Ana Crnković, Yousong Ding, Jonathan R Krieger, Eric Westhof, Dieter Söll, Sergey Melnikov
Bacterial translation machinery for deliberate mistranslation of the genetic code. Proceedings of the National Academy of Sciences of the United States of America 118 (35) (2021)
Manyun Chen, Garret M Rubin, Guangde Jiang, Zachary Raad, Yousong Ding
Biosynthesis and Heterologous Production of Mycosporine-Like Amino Acid Palythines. The Journal of organic chemistry 86 (16) (2021)
Dipesh Dhakal, Manyun Chen, Hendrik Luesch, Yousong Ding
Heterologous production of cyanobacterial compounds. Journal of industrial microbiology & biotechnology 48 (3-4) (2021)
Gengnan Li, Krishna Patel, Yi Zhang, Jackson K Pugmire, Yousong Ding, Steven D Bruner
Structural and biochemical studies of an iterative ribosomal peptide macrocyclase. Proteins (2021)
Peilan Zhang, Brian S MacTavish, Guang Yang, Manyun Chen, Jaehyeok Roh, Kevin R Newsome, Steven D Bruner, Yousong Ding
Cyanobacterial Dihydroxyacid Dehydratases Are a Promising Growth Inhibition Target. ACS chemical biology 15 (8) (2020)
Guangde Jiang, Peilan Zhang, Ranjala Ratnayake, Guang Yang, Yi Zhang, Ran Zuo, Magan Powell, José C Huguet-Tapia, Khalil A Abboud, Long H Dang, Max Teplitski, Valerie Paul, Rui Xiao, K H Ahammad, Uz Zaman, Zhenquan Hu, Shugeng Cao, Hendrik Luesch, Yousong Ding
Fungal Epithiodiketopiperazines Carrying α,β-Polysulfide Bridges from Penicillium steckii YE, and Their Chemical Interconversion. Chembiochem : a European journal of chemical biology 22 (2) (2020)
Garret M Rubin, Yousong Ding
Recent advances in the biosynthesis of RiPPs from multicore-containing precursor peptides. Journal of industrial microbiology & biotechnology 47 (9-10) (2020)
Fuqian Wang, Ariel M Sarotti, Guangde Jiang, José C Huguet-Tapia, Shao Liang Zheng, Xiaohua Wu, Chunshun Li, Yousong Ding, Shugeng Cao
Waikikiamides A-C: Complex Diketopiperazine Dimer and Diketopiperazine-Polyketide Hybrids from a Hawaiian Marine Fungal Strain Aspergillus sp. FM242. Organic letters 22 (11) (2020)
Guangde Jiang, Yi Zhang, Magan M Powell, Sarah M Hylton, Nicholas W Hiller, Rosemary Loria, Yousong Ding
A Promiscuous Cytochrome P450 Hydroxylates Aliphatic and Aromatic C-H Bonds of Aromatic 2,5-Diketopiperazines. Chembiochem : a European journal of chemical biology 20 (8) (2019)
Ran Zuo, Yousong Ding
Direct Aromatic Nitration System for Synthesis of Nitrotryptophans in Escherichia coli. ACS synthetic biology 8 (4) (2019)
Sarath P Gunasekera, Julie L Meyer, Yousong Ding, Khalil A Abboud, Danmeng Luo, Justin E Campbell, Alexander Angerhofer, Justin L Goodsell, Laurie J Raymundo, Junyang Liu, Tao Ye, Hendrik Luesch, Max Teplitski, Valerie J Paul
Chemical and Metagenomic Studies of the Lethal Black Band Disease of Corals Reveal Two Broadly Distributed, Redox-Sensitive Mixed Polyketide/Peptide Macrocycles. Journal of natural products 82 (1) (2019)
Yi Zhang, Kunhua Li, Guang Yang, Joshua L McBride, Steven D Bruner, Yousong Ding
A distributive peptide cyclase processes multiple microviridin core peptides within a single polypeptide substrate. Nature communications 9 (1) (2018)
Guang Yang, Monica A Cozad, Destin A Holland, Yi Zhang, Hendrik Luesch, Yousong Ding
Photosynthetic Production of Sunscreen Shinorine Using an Engineered Cyanobacterium. ACS synthetic biology 7 (2) (2018)
Peilan Zhang, Kunhua Li, Guang Yang, Changqing Xia, Jane E Polston, Gengnan Li, Shiwu Li, Zhao Lin, Li-Jun Yang, Steven D Bruner, Yousong Ding
Cytotoxic protein from the mushroom Coprinus comatus possesses a unique mode for glycan binding and specificity. Proceedings of the National Academy of Sciences of the United States of America 114 (34) (2017)