Alex Bateman

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 25

Top Venues

Bioinformatics advances

Nucleic acids research

Nature

PLoS computational biology

European Bioinformatics Institute

MRC Laboratory of Molecular Biology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Bioinformatics Institute Nov 1o 2012

United Kingdom

Head of Protein Sequence Resources

Education History

MRC Laboratory of Molecular Biology Oct 1o 1994 - Oct 1o 1997

United Kingdom

PHD :: Structural Studies

Publications

Gustavo A Salazar, Aurélien Luciani, Xavier Watkins, Swaathi Kandasaamy, Daniel L Rice, Matthias Blum, Alex Bateman, Maria Jesus Martin
Nightingale: web components for protein feature visualization. Bioinformatics advances 3 (1) (2023)
Janani Durairaj, Andrew M Waterhouse, Toomas Mets, Tetiana Brodiazhenko, Minhal Abdullah, Gabriel Studer, Gerardo Tauriello, Mehmet Akdel, Antonina Andreeva, Alex Bateman, Tanel Tenson, Vasili Hauryliuk, Torsten Schwede, Joana Pereira
Uncovering new families and folds in the natural protein universe. Nature (2023)
Bohdan Schneider, Blake Alexander Sweeney, Alex Bateman, Jiri Cerny, Tomasz Zok, Marta Szachniuk
When will RNA get its AlphaFold moment? Nucleic acids research (2023)
Agustín Ormazábal, Matías Sebastián Carletti, Tadeo Enrique Saldaño, Martín Gonzalez Buitron, Julia Marchetti, Nicolas Palopoli, Alex Bateman
Expanding the repertoire of human tandem repeat RNA-binding proteins. PloS one 18 (9) (2023)
Gustavo A Salazar, Aurélien Luciani, Xavier Watkins, Swaathi Kandasaamy, Daniel L Rice, Matthias Blum, Alex Bateman, Maria Jesus Martin
Nightingale: web components for protein feature visualization. Bioinformatics advances 3 (1) (2023)
Lyra O Randzavola, Paige M Mortimer, Emma Garside, Elisabeth R Dufficy, Andrea Schejtman, Georgia Roumelioti, Lu Yu, Mercedes Pardo, Kerstin Spirohn, Charlotte Tolley, Cordelia Brandt, Katherine Harcourt, Esme Nichols, Mike Nahorski, Geoff Woods, James C Williamson, Shreehari Suresh, John M Sowerby, Misaki Matsumoto, Celio X C Santos, Cher Shen Kiar, Subhankar Mukhopadhyay, Will M Rae, Gordon J Dougan, John Grainger, Paul J Lehner, Michael A Calderwood, Jyoti Choudhary, Simon Clare, Anneliese Speak, Giorgia Santilli, Alex Bateman, Kenneth G C Smith, Francesca Magnani, David C Thomas
EROS is a selective chaperone regulating the phagocyte NADPH oxidase and purinergic signalling. eLife 11 (2022)
Vivian Monzon, Daniel H Haft, Alex Bateman
Folding the unfoldable: using AlphaFold to explore spurious proteins. Bioinformatics advances 2 (1) (2022)
Matthew Thakur, Alex Bateman, Cath Brooksbank, Mallory Ann Freeberg, Melissa Harrison, Matthew Hartley, Thomas M Keane, Gerard Kleywegt, Andrew Leach, Mariia Levchenko, Sarah Morgan, Ellen M McDonagh, Sandra E Orchard, Irene Papatheodorou, Sameer Velankar, Juan Antonio Vizcaino, Rick Witham, Barbara Zdrazil, Johanna McEntyre
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic acids research (2022)
Typhaine Paysan-Lafosse, Matthias Blum, Sara Rocío Chuguransky, Tiago Grego, Beatriz Lázaro Pinto, Gustavo A Salazar, Maxwell L Bileschi, Peer Bork, Alan J Bridge, Lucy J Colwell, Julian Gough, Daniel H Haft, Ivica Letunic, Aron Marchler-Bauer, Huaiyu Mi, Darren A Natale, Christine A Orengo, Arun Prasad Pandurangan, Catherine Rivoire, Christian J A Sigrist, Ian Sillitoe, Narmada Thanki, Paul D Thomas, Silvio C E Tosatto, Cathy H Wu, Alex Bateman
InterPro in 2022. Nucleic acids research (2022)
Elena Tea Russo, Federico Barone, Alex Bateman, Stefano Cozzini, Marco Punta, Alessandro Laio
DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets. PLoS computational biology 18 (10) (2022)
Vivian Monzon, Daniel H Haft, Alex Bateman
Folding the unfoldable: using AlphaFold to explore spurious proteins. Bioinformatics advances 2 (1) (2022)
Mehmet Akdel, Douglas E V Pires, Eduard Porta Pardo, Jürgen Jänes, Arthur O Zalevsky, Bálint Mészáros, Patrick Bryant, Lydia L Good, Roman A Laskowski, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Petras Kundrotas, Victoria Ruiz Serra, Carlos Henrique Miranda, Alistair S Dunham, David Francis Burke, Neera Borkakoti, Sameer Velankar, Adam Frost, Jérôme Basquin, Kresten Lindorff-Larsen, Alex Bateman, Andrey V Kajava, Alfonso Valencia, Sergey Ovchinnikov, Janani Durairaj, David Benjamin Ascher, Janet M Thornton, Norman E Davey, Amelie Stein, Arne Elofsson, Tristan I Croll, Pedro Beltrao
A structural biology community assessment of AlphaFold2 applications. Nature structural & molecular biology 29 (11) (2022)
Jacob Bobonis, Karin Mitosch, André Mateus, Nicolai Karcher, George Kritikos, Joel Selkrig, Matylda Zietek, Vivian Monzon, Birgit Pfalz, Sarela Garcia-Santamarina, Marco Galardini, Anna Sueki, Callie Kobayashi, Frank Stein, Alex Bateman, Georg Zeller, Mikhail M Savitski, Johanna R Elfenbein, Helene L Andrews-Polymenis, Athanasios Typas
Bacterial retrons encode phage-defending tripartite toxin-antitoxin systems. Nature 609 (7925) (2022)
Maxwell L Bileschi, David Belanger, Drew H Bryant, Theo Sanderson, Brandon Carter, D Sculley, Alex Bateman, Mark A DePristo, Lucy J Colwell
Using deep learning to annotate the protein universe. Nature biotechnology 40 (6) (2022)
Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia Noemi Arighi, Jill Babor, Alex Bateman, Ian K Blaby, Crysten Blaby-Haas, Alan J Bridge, Stephen K Burley, Stacey Cleveland, Lucy J Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M Gyori, Christopher Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria-Jesus Martin, Claire McWhite, Gaurav D Moghe, Paul Monaghan, Anne Morgat, Christopher John Mungall, Darren A Natale, William C Nelson, Seán O'Donoghue, Christine Orengo, Katherine H O'Toole, Predrag Radivojac, Colbie Reed, Richard J Roberts, Dmitri Rodionov, Irina A Rodionova, Jeffrey D Rudolf, Lana Saleh, Gloria M Sheynkman, Francoise Thibaud-Nissen, Paul D Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter R Weigele, Valerie Wood, Elisha M Wood-Charlson, Jin Xu
A roadmap for the functional annotation of protein families: a community perspective. Database : the journal of biological databases and curation 2022 (2022)
Georgy Smyshlyaev, Alex Bateman, Orsolya Barabas
Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes. Molecular systems biology 17 (5) (2022)
Kathryn Tunyasuvunakool, Jonas Adler, Zachary Wu, Tim Green, Michal Zielinski, Augustin Žídek, Alex Bridgland, Andrew Cowie, Clemens Meyer, Agata Laydon, Sameer Velankar, Gerard J Kleywegt, Alex Bateman, Richard Evans, Alexander Pritzel, Michael Figurnov, Olaf Ronneberger, Russ Bates, Simon A A Kohl, Anna Potapenko, Andrew J Ballard, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Ellen Clancy, David Reiman, Stig Petersen, Andrew W Senior, Koray Kavukcuoglu, Ewan Birney, Pushmeet Kohli, John M Jumper, Demis Hassabis
Highly accurate protein structure prediction for the human proteome. Nature 596 (7873) (2021)
Loïc Lannelongue, Jason Grealey, Alex Bateman, Michael Inouye
Ten simple rules to make your computing more environmentally sustainable. PLoS computational biology 17 (9) (2021)
Gaia Cantelli, Alex Bateman, Cath Brooksbank, Anton I Petrov, Rahuman S Malik-Sheriff, Michele Ide-Smith, Henning Hermjakob, Paul Flicek, Rolf Apweiler, Ewan Birney, Johanna McEntyre
The European Bioinformatics Institute (EMBL-EBI) in 2021. Nucleic acids research (2021)
Alex Bateman, Thomas Lengauer
Editorial. Bioinformatics advances 1 (1) (2021)
Sophie Jean Walton, Han Wang, Porfirio Quintero-Cadena, Alex Bateman, Paul W Sternberg
Caenorhabditis elegans AF4/FMR2 Family Homolog affl-2 Regulates Heat-Shock-Induced Gene Expression. Genetics 215 (4) (2020)
Matt Jeffryes, Alex Bateman
Rapid identification of novel protein families using similarity searches. F1000Research 7 (2018)
Wolfram Höps, Matt Jeffryes, Alex Bateman
Gene Unprediction with Spurio: A tool to identify spurious protein sequences. F1000Research 7 (2018)
Simona Panni, Ananth Prakash, Alex Bateman, Sandra E Orchard
The yeast noncoding RNA interaction network. RNA (New York, N.Y.) 23 (10) (2017)
Robert D Finn, Teresa K Attwood, Patricia C Babbitt, Alex Bateman, Peer Bork, Alan J Bridge, Hsin-Yu Chang, Zsuzsanna Dosztányi, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Gemma L Holliday, Hongzhan Huang, Xiaosong Huang, Ivica Letunic, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer, Huaiyu Mi, Jaina Mistry, Darren A Natale, Marco Necci, Gift Nuka, Christine A Orengo, Youngmi Park, Sebastien Pesseat, Damiano Piovesan, Simon C Potter, Neil D Rawlings, Nicole Redaschi, Lorna Richardson, Catherine Rivoire, Amaia Sangrador-Vegas, Christian Sigrist, Ian Sillitoe, Ben Smithers, Silvano Squizzato, Granger Sutton, Narmada Thanki, Paul D Thomas, Silvio C E Tosatto, Cathy H Wu, Ioannis Xenarios, Lai-Su Yeh, Siew-Yit Young, Alex L Mitchell
InterPro in 2017-beyond protein family and domain annotations. Nucleic acids research 45 (D1) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Alex Bateman