Yue Shen

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 32

Top Topics

Saccharomyces Cerevisiae

Top Venues

ACS synthetic biology

Nature communications

Nature computational science

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Xian Fu, Yue Shen
Synthetic Genomics: Repurposing Biological Systems for Applications in Engineering Biology. ACS synthetic biology 13 (5) (2024)
Yuting Chen, Haoling Zhang, Wen Wang, Yue Shen, Zhi Ping
Rapid generation of high-quality structure figures for publication with PyMOL-PUB. Bioinformatics (Oxford, England) 40 (3) (2024)
Yuting Chen, Haoling Zhang, Wen Wang, Yue Shen, Zhi Ping
Rapid generation of high-quality structure figures for publication with PyMOL-PUB. Bioinformatics (Oxford, England) 40 (3) (2024)
Xian Fu, Yue Shen
Synthetic Genomics: Repurposing Biological Systems for Applications in Engineering Biology. ACS synthetic biology 13 (5) (2024)
Yiming Li, Haoling Zhang, Yuxin Chen, Yue Shen, Zhi Ping
DNA Bloom Filter enables anti-contamination and file version control for DNA-based data storage. Briefings in bioinformatics 25 (3) (2024)
Jinwei Zhang, Guomiao Zhao, Wenxin Bai, Ying Chen, Yuan Zhang, Fan Li, Manyi Wang, Yue Shen, Yun Wang, Xiaoyan Wang, Chun Li
A Genomewide Evolution-Based CRISPR/Cas9 with Donor-Free (GEbCD) for Developing Robust and Productive Industrial Yeast. ACS synthetic biology (2024)
Xian Fu, Yue Shen
Synthetic Genomics: Repurposing Biological Systems for Applications in Engineering Biology. ACS synthetic biology 13 (5) (2024)
Xian Fu, Yue Shen
Synthetic Genomics: Repurposing Biological Systems for Applications in Engineering Biology. ACS synthetic biology 13 (5) (2024)
Jinwei Zhang, Guomiao Zhao, Wenxin Bai, Ying Chen, Yuan Zhang, Fan Li, Manyi Wang, Yue Shen, Yun Wang, Xiaoyan Wang, Chun Li
A Genomewide Evolution-Based CRISPR/Cas9 with Donor-Free (GEbCD) for Developing Robust and Productive Industrial Yeast. ACS synthetic biology (2024)
Yuting Chen, Haoling Zhang, Wen Wang, Yue Shen, Zhi Ping
Rapid generation of high-quality structure figures for publication with PyMOL-PUB. Bioinformatics (Oxford, England) 40 (3) (2024)
Yiming Li, Haoling Zhang, Yuxin Chen, Yue Shen, Zhi Ping
DNA Bloom Filter enables anti-contamination and file version control for DNA-based data storage. Briefings in bioinformatics 25 (3) (2024)
Jinwei Zhang, Guomiao Zhao, Wenxin Bai, Ying Chen, Yuan Zhang, Fan Li, Manyi Wang, Yue Shen, Yun Wang, Xiaoyan Wang, Chun Li
A Genomewide Evolution-Based CRISPR/Cas9 with Donor-Free (GEbCD) for Developing Robust and Productive Industrial Yeast. ACS synthetic biology 13 (8) (2024)
Xian Fu, Yue Shen
Synthetic Genomics: Repurposing Biological Systems for Applications in Engineering Biology. ACS synthetic biology 13 (5) (2024)
Yu Zhang, Mengdi Yuan, Xinxin Wu, Qiuhui Zhang, Yuzhu Wang, Liming Zheng, Tsan-Yu Chiu, Huiming Zhang, Lei Lan, Feng Wang, Ying Liao, Xuemei Gong, Shirui Yan, Yun Wang, Yue Shen, Xian Fu
The construction and optimization of engineered yeast chassis for efficient biosynthesis of 8-hydroxygeraniol. mLife 2 (4) (2023)
Dan Liang, Aleksei Mikhalchenko, Hong Ma, Nuria Marti Gutierrez, Tailai Chen, Yeonmi Lee, Sang-Wook Park, Rebecca Tippner-Hedges, Amy Koski, Hayley Darby, Ying Li, Crystal Van Dyken, Han Zhao, Keliang Wu, Jingye Zhang, Zhenzhen Hou, Seongjun So, Jongsuk Han, Jumi Park, Chong-Jai Kim, Kai Zong, Jianhui Gong, Yilin Yuan, Ying Gu, Yue Shen, Susan B Olson, Hui Yang, David Battaglia, Thomas O'Leary, Sacha A Krieg, David M Lee, Diana H Wu, Paul Barton Duell, Sanjiv Kaul, Jin-Soo Kim, Stephen B Heitner, Eunju Kang, Zi-Jiang Chen, Paula Amato, Shoukhrat M Mitalipov
Limitations of gene editing assessments in human preimplantation embryos. Nature communications 14 (1) (2023)
Tiantian Chang, Weichao Ding, Shirui Yan, Yun Wang, Haoling Zhang, Yu Zhang, Zhi Ping, Huiming Zhang, Yijian Huang, Jiahui Zhang, Dan Wang, Wenwei Zhang, Xue Liu, Yue Shen, Xian Fu
A robust yeast biocontainment system with two-layered regulation switch dependent on unnatural amino acid. Nature communications 14 (1) (2023)
Yu Zhang, Mengdi Yuan, Xinxin Wu, Qiuhui Zhang, Yuzhu Wang, Liming Zheng, Tsan-Yu Chiu, Huiming Zhang, Lei Lan, Feng Wang, Ying Liao, Xuemei Gong, Shirui Yan, Yun Wang, Yue Shen, Xian Fu
The construction and optimization of engineered yeast chassis for efficient biosynthesis of 8-hydroxygeraniol. mLife 2 (4) (2023)
Dan Liang, Aleksei Mikhalchenko, Hong Ma, Nuria Marti Gutierrez, Tailai Chen, Yeonmi Lee, Sang-Wook Park, Rebecca Tippner-Hedges, Amy Koski, Hayley Darby, Ying Li, Crystal Van Dyken, Han Zhao, Keliang Wu, Jingye Zhang, Zhenzhen Hou, Seongjun So, Jongsuk Han, Jumi Park, Chong-Jai Kim, Kai Zong, Jianhui Gong, Yilin Yuan, Ying Gu, Yue Shen, Susan B Olson, Hui Yang, David Battaglia, Thomas O'Leary, Sacha A Krieg, David M Lee, Diana H Wu, Paul Barton Duell, Sanjiv Kaul, Jin-Soo Kim, Stephen B Heitner, Eunju Kang, Zi-Jiang Chen, Paula Amato, Shoukhrat M Mitalipov
Limitations of gene editing assessments in human preimplantation embryos. Nature communications 14 (1) (2023)
Dan Liang, Aleksei Mikhalchenko, Hong Ma, Nuria Marti Gutierrez, Tailai Chen, Yeonmi Lee, Sang-Wook Park, Rebecca Tippner-Hedges, Amy Koski, Hayley Darby, Ying Li, Crystal Van Dyken, Han Zhao, Keliang Wu, Jingye Zhang, Zhenzhen Hou, Seongjun So, Jongsuk Han, Jumi Park, Chong-Jai Kim, Kai Zong, Jianhui Gong, Yilin Yuan, Ying Gu, Yue Shen, Susan B Olson, Hui Yang, David Battaglia, Thomas O'Leary, Sacha A Krieg, David M Lee, Diana H Wu, Paul Barton Duell, Sanjiv Kaul, Jin-Soo Kim, Stephen B Heitner, Eunju Kang, Zi-Jiang Chen, Paula Amato, Shoukhrat M Mitalipov
Limitations of gene editing assessments in human preimplantation embryos. Nature communications 14 (1) (2023)
Dan Liang, Aleksei Mikhalchenko, Hong Ma, Nuria Marti Gutierrez, Tailai Chen, Yeonmi Lee, Sang-Wook Park, Rebecca Tippner-Hedges, Amy Koski, Hayley Darby, Ying Li, Crystal Van Dyken, Han Zhao, Keliang Wu, Jingye Zhang, Zhenzhen Hou, Seongjun So, Jongsuk Han, Jumi Park, Chong-Jai Kim, Kai Zong, Jianhui Gong, Yilin Yuan, Ying Gu, Yue Shen, Susan B Olson, Hui Yang, David Battaglia, Thomas O'Leary, Sacha A Krieg, David M Lee, Diana H Wu, Paul Barton Duell, Sanjiv Kaul, Jin-Soo Kim, Stephen B Heitner, Eunju Kang, Zi-Jiang Chen, Paula Amato, Shoukhrat M Mitalipov
Limitations of gene editing assessments in human preimplantation embryos. Nature communications 14 (1) (2023)
Zhi Ping, Shihong Chen, Guangyu Zhou, Xiaoluo Huang, Sha Joe Zhu, Haoling Zhang, Henry H Lee, Zhaojun Lan, Jie Cui, Tai Chen, Wenwei Zhang, Huanming Yang, Xue Liu, George M Church, Yue Shen
Towards practical and robust DNA-based data archiving using the yin-yang codec system. Nature computational science 2 (4) (2022)
Xian Fu, Yijian Huang, Yue Shen
Improving the Efficiency and Orthogonality of Genetic Code Expansion. Biodesign research 2022 (2022)
Zhi Ping, Shihong Chen, Guangyu Zhou, Xiaoluo Huang, Sha Joe Zhu, Haoling Zhang, Henry H Lee, Zhaojun Lan, Jie Cui, Tai Chen, Wenwei Zhang, Huanming Yang, Xue Liu, George M Church, Yue Shen
Towards practical and robust DNA-based data archiving using the yin-yang codec system. Nature computational science 2 (4) (2022)
Zhi Ping, Shihong Chen, Guangyu Zhou, Xiaoluo Huang, Sha Joe Zhu, Haoling Zhang, Henry H Lee, Zhaojun Lan, Jie Cui, Tai Chen, Wenwei Zhang, Huanming Yang, Xue Liu, George M Church, Yue Shen
Towards practical and robust DNA-based data archiving using the yin-yang codec system. Nature computational science 2 (4) (2022)
Haolin Zhang, Xuemei Gong, Qianqian Zhao, Takahito Mukai, Oscar Vargas-Rodriguez, Huiming Zhang, Yuxing Zhang, Paul Wassel, Kazuaki Amikura, Julie A Maupin-Furlow, Yan Ren, Xue Liu, Yuri I Wolf, Kira S Makarova, Eugene V Koonin, Yue Shen, Dieter Söll, Xian Fu
The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism. Nucleic acids research 50 (8) (2022)
Zhi Ping, Shihong Chen, Guangyu Zhou, Xiaoluo Huang, Sha Joe Zhu, Haoling Zhang, Henry H Lee, Zhaojun Lan, Jie Cui, Tai Chen, Wenwei Zhang, Huanming Yang, Xue Liu, George M Church, Yue Shen
Towards practical and robust DNA-based data archiving using the yin-yang codec system. Nature computational science 2 (4) (2022)
Huiming Zhang, Xian Fu, Xuemei Gong, Yun Wang, Haolin Zhang, Yu Zhao, Yue Shen
Systematic dissection of key factors governing recombination outcomes by GCE-SCRaMbLE. Nature communications 13 (1) (2022)
Tianbin Liu, Jie Li, Leqian Yu, Hai-Xi Sun, Jing Li, Guoyi Dong, Yingying Hu, Yong Li, Yue Shen, Jun Wu, Ying Gu
Cross-species single-cell transcriptomic analysis reveals pre-gastrulation developmental differences among pigs, monkeys, and humans. Cell discovery 7 (1) (2021)
Tianbin Liu, Jie Li, Leqian Yu, Hai-Xi Sun, Jing Li, Guoyi Dong, Yingying Hu, Yong Li, Yue Shen, Jun Wu, Ying Gu
Author Correction: Cross-species single-cell transcriptomic analysis reveals pre-gastrulation developmental differences among pigs, monkeys, and humans. Cell discovery 7 (1) (2021)
Yu Zhang, Tsan-Yu Chiu, Jin-Tao Zhang, Shu-Jie Wang, Shu-Wen Wang, Long-Ying Liu, Zhi Ping, Yong Wang, Ao Chen, Wen-Wei Zhang, Tai Chen, Yun Wang, Yue Shen
Systematical Engineering of Synthetic Yeast for Enhanced Production of Lycopene. Bioengineering (Basel, Switzerland) 8 (1) (2021)
Sergey V Melnikov, David L Stevens, Xian Fu, Hui Si Kwok, Jin-Tao Zhang, Yue Shen, Jeffery Sabina, Kevin Lee, Harry Lee, Dieter Söll
Exploiting evolutionary trade-offs for posttreatment management of drug-resistant populations. Proceedings of the National Academy of Sciences of the United States of America 117 (30) (2020)
Guillaume Mercy, Julien Mozziconacci, Vittore F Scolari, Kun Yang, Guanghou Zhao, Agnès Thierry, Yisha Luo, Leslie A Mitchell, Michael Shen, Yue Shen, Roy S K Walker, Weimin Zhang, Yi Wu, Ze-Xiong Xie, Zhou-Qing Luo, Yizhi Cai, Jun-Biao Dai, Huanming Yang, Ying-Jin Yuan, Jef D Boeke, Joel S Bader, Héloïse Muller, Romain Koszul
3D organization of synthetic and scrambled chromosomes. Science (New York, N.Y.) 355 (6329) (2017)