Romain Koszul

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Topics

Saccharomyces Cerevisiae

Bacillus Subtilis

Top Venues

Nature communications

Nature structural & molecular biology

G3 (Bethesda, Md.)

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Sylvain Legrand, Asma Saifudeen, Hélène Bordelet, Julien Vernerey, Arnaud Guille, Amaury Bignaud, Agnès Thierry, Laurent Acquaviva, Maxime Gaudin, Aurore Sanchez, Dominic Johnson, Anne Friedrich, Joseph Schacherer, Matthew J Neale, Valérie Borde, Romain Koszul, Bertrand Llorente
Absence of chromosome axis protein recruitment prevents meiotic recombination chromosome-wide in the budding yeast Lachancea kluyveri . Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Jacques Serizay, Cyril Matthey-Doret, Amaury Bignaud, Lyam Baudry, Romain Koszul
Orchestrating chromosome conformation capture analysis with Bioconductor. Nature communications 15 (1) (2024)
Amaury Bignaud, Charlotte Cockram, Céline Borde, Justine Groseille, Eric Allemand, Agnès Thierry, Martial Marbouty, Julien Mozziconacci, Olivier Espéli, Romain Koszul
Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes. Nature structural & molecular biology (2024)
Amaury Bignaud, Charlotte Cockram, Céline Borde, Justine Groseille, Eric Allemand, Agnès Thierry, Martial Marbouty, Julien Mozziconacci, Olivier Espéli, Romain Koszul
Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes. Nature structural & molecular biology 31 (3) (2024)
Nathaniel Burman, Svetlana Belukhina, Florence Depardieu, Royce A Wilkinson, Mikhail Skutel, Andrew Santiago-Frangos, Ava B Graham, Alexei Livenskyi, Anna Chechenina, Natalia Morozova, Trevor Zahl, William S Henriques, Murat Buyukyoruk, Christophe Rouillon, Baptiste Saudemont, Elena Y Shyrokova, Tatsuaki Kurata, Vasili Hauryliuk, Konstantin Severinov, Justine Groseille, Agnès Thierry, Romain Koszul, Florian Tesson, Aude Bernheim, David Bikard, Blake Wiedenheft, Artem Isaev
A virally-encoded tRNA neutralizes the PARIS antiviral defence system. Nature (2024)
Nathaniel Burman, Svetlana Belukhina, Florence Depardieu, Royce A Wilkinson, Mikhail Skutel, Andrew Santiago-Frangos, Ava B Graham, Alexei Livenskyi, Anna Chechenina, Natalia Morozova, Trevor Zahl, William S Henriques, Murat Buyukyoruk, Christophe Rouillon, Baptiste Saudemont, Elena Y Shyrokova, Tatsuaki Kurata, Vasili Hauryliuk, Konstantin Severinov, Justine Groseille, Agnès Thierry, Romain Koszul, Florian Tesson, Aude Bernheim, David Bikard, Blake Wiedenheft, Artem Isaev
A virally-encoded tRNA neutralizes the PARIS antiviral defence system. Nature (2024)
Sylvain Legrand, Asma Saifudeen, Hélène Bordelet, Julien Vernerey, Arnaud Guille, Amaury Bignaud, Agnès Thierry, Laurent Acquaviva, Maxime Gaudin, Aurore Sanchez, Dominic Johnson, Anne Friedrich, Joseph Schacherer, Matthew J Neale, Valérie Borde, Romain Koszul, Bertrand Llorente
Absence of chromosome axis protein recruitment prevents meiotic recombination chromosome-wide in the budding yeast Lachancea kluyveri . Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Thomas Forest, Guillaume Achaz, Martial Marbouty, Amaury Bignaud, Agnès Thierry, Romain Koszul, Marine Milhes, Joanna Lledo, Jean-Marc Pons, Jérôme Fuchs
Chromosome-level genome assembly of the European green woodpecker Picus viridis. G3 (Bethesda, Md.) (2024)
Jacques Serizay, Cyril Matthey-Doret, Amaury Bignaud, Lyam Baudry, Romain Koszul
Orchestrating chromosome conformation capture analysis with Bioconductor. Nature communications 15 (1) (2024)
Philipp H Schiffer, Paschalis Natsidis, Daniel J Leite, Helen E Robertson, François Lapraz, Ferdinand Marlétaz, Bastian Fromm, Liam Baudry, Fraser Simpson, Eirik Høye, Anne C Zakrzewski, Paschalia Kapli, Katharina J Hoff, Steven Mueller, Martial Marbouty, Heather Marlow, Richard R Copley, Romain Koszul, Peter Sarkies, Maximilian J Telford
Insights into early animal evolution form the genome of the xenacoelomorph worm Xenoturbella bocki . eLife 13 (2024)
Jacques Serizay, Romain Koszul
Epigenomics coverage data extraction and aggregation in R with tidyCoverage. Bioinformatics (Oxford, England) 40 (8) (2024)
Sylvain Legrand, Asma Saifudeen, Hélène Bordelet, Julien Vernerey, Arnaud Guille, Amaury Bignaud, Agnès Thierry, Laurent Acquaviva, Maxime Gaudin, Aurore Sanchez, Dominic Johnson, Anne Friedrich, Joseph Schacherer, Matthew J Neale, Valérie Borde, Romain Koszul, Bertrand Llorente
Absence of chromosome axis protein recruitment prevents meiotic recombination chromosome-wide in the budding yeast Lachancea kluyveri . Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Amaury Bignaud, Romain Koszul
[Transcription: The backbone of bacterial chromosome architecture]. Medecine sciences : M/S 40 (5) (2024)
Amaury Bignaud, Charlotte Cockram, Céline Borde, Justine Groseille, Eric Allemand, Agnès Thierry, Martial Marbouty, Julien Mozziconacci, Olivier Espéli, Romain Koszul
Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes. Nature structural & molecular biology 31 (3) (2024)
Thomas Forest, Guillaume Achaz, Martial Marbouty, Amaury Bignaud, Agnès Thierry, Romain Koszul, Marine Milhes, Joanna Lledo, Jean-Marc Pons, Jérôme Fuchs
Chromosome-level genome assembly of the European green woodpecker Picus viridis. G3 (Bethesda, Md.) 14 (5) (2024)
Jacques Serizay, Romain Koszul
Epigenomics coverage data extraction and aggregation in R with tidyCoverage. Bioinformatics (Oxford, England) 40 (8) (2024)
Thomas Forest, Guillaume Achaz, Martial Marbouty, Amaury Bignaud, Agnès Thierry, Romain Koszul, Marine Milhes, Joanna Lledo, Jean-Marc Pons, Jérôme Fuchs
Chromosome-level genome assembly of the European green woodpecker Picus viridis. G3 (Bethesda, Md.) 14 (5) (2024)
Jacques Serizay, Cyril Matthey-Doret, Amaury Bignaud, Lyam Baudry, Romain Koszul
Orchestrating chromosome conformation capture analysis with Bioconductor. Nature communications 15 (1) (2024)
Amaury Bignaud, Romain Koszul
[Transcription: The backbone of bacterial chromosome architecture]. Medecine sciences : M/S 40 (5) (2024)
Thomas Forest, Guillaume Achaz, Martial Marbouty, Amaury Bignaud, Agnès Thierry, Romain Koszul, Marine Milhes, Joanna Lledo, Jean-Marc Pons, Jérôme Fuchs
Chromosome-level genome assembly of the European green woodpecker Picus viridis. G3 (Bethesda, Md.) 14 (5) (2024)
Amaury Bignaud, Charlotte Cockram, Céline Borde, Justine Groseille, Eric Allemand, Agnès Thierry, Martial Marbouty, Julien Mozziconacci, Olivier Espéli, Romain Koszul
Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes. Nature structural & molecular biology 31 (3) (2024)
Jacques Serizay, Romain Koszul
Epigenomics coverage data extraction and aggregation in R with tidyCoverage. Bioinformatics (Oxford, England) 40 (8) (2024)
Amaury Bignaud, Charlotte Cockram, Céline Borde, Justine Groseille, Eric Allemand, Agnès Thierry, Martial Marbouty, Julien Mozziconacci, Olivier Espéli, Romain Koszul
Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes. Nature structural & molecular biology 31 (3) (2024)
Thomas Forest, Guillaume Achaz, Martial Marbouty, Amaury Bignaud, Agnès Thierry, Romain Koszul, Marine Milhes, Joanna Lledo, Jean-Marc Pons, Jérôme Fuchs
Chromosome-level genome assembly of the European green woodpecker Picus viridis. G3 (Bethesda, Md.) 14 (5) (2024)
Sylvain Legrand, Asma Saifudeen, Hélène Bordelet, Julien Vernerey, Arnaud Guille, Amaury Bignaud, Agnès Thierry, Laurent Acquaviva, Maxime Gaudin, Aurore Sanchez, Dominic Johnson, Anne Friedrich, Joseph Schacherer, Matthew J Neale, Valérie Borde, Romain Koszul, Bertrand Llorente
Absence of chromosome axis protein recruitment prevents meiotic recombination chromosome-wide in the budding yeast Lachancea kluyveri . Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Jacques Serizay, Cyril Matthey-Doret, Amaury Bignaud, Lyam Baudry, Romain Koszul
Orchestrating chromosome conformation capture analysis with Bioconductor. Nature communications 15 (1) (2024)
Guilherme Dias de Melo, Victoire Perraud, Flavio Alvarez, Alba Vieites-Prado, Seonhee Kim, Lauriane Kergoat, Anthony Coleon, Bettina Salome Trüeb, Magali Tichit, Aurèle Piazza, Agnès Thierry, David Hardy, Nicolas Wolff, Sandie Munier, Romain Koszul, Etienne Simon-Loriere, Volker Thiel, Marc Lecuit, Pierre-Marie Lledo, Nicolas Renier, Florence Larrous, Hervé Bourhy
Author Correction: Neuroinvasion and anosmia are independent phenomena upon infection with SARS-CoV-2 and its variants. Nature communications 14 (1) (2023)
Guilherme Dias de Melo, Victoire Perraud, Flavio Alvarez, Alba Vieites-Prado, Seonhee Kim, Lauriane Kergoat, Anthony Coleon, Bettina Salome Trüeb, Magali Tichit, Aurèle Piazza, Agnès Thierry, David Hardy, Nicolas Wolff, Sandie Munier, Romain Koszul, Etienne Simon-Loriere, Volker Thiel, Marc Lecuit, Pierre-Marie Lledo, Nicolas Renier, Florence Larrous, Hervé Bourhy
Neuroinvasion and anosmia are independent phenomena upon infection with SARS-CoV-2 and its variants. Nature communications 14 (1) (2023)
Jonay Garcia-Luis, Hélène Bordelet, Agnès Thierry, Romain Koszul, Luís Aragón
Depletion or cleavage of cohesin during anaphase differentially affects chromatin structure and segregation. eLife 11 (2022)
Nathalie Bastié, Christophe Chapard, Lise Dauban, Olivier Gadal, Frédéric Beckouët, Romain Koszul
Smc3 acetylation, Pds5 and Scc2 control the translocase activity that establishes cohesin-dependent chromatin loops. Nature structural & molecular biology 29 (6) (2022)
Cyril Matthey-Doret, Morgan J Colp, Pedro Escoll, Agnès Thierry, Pierrick Moreau, Bruce Curtis, Tobias Sahr, Matt Sarrasin, Michael W Gray, B Franz Lang, John M Archibald, Carmen Buchrieser, Romain Koszul
Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection-related chromatin reorganization. Genome research (2022)
Brenna Conin, Ingrid Billault-Chaumartin, Hafez El Sayyed, Nicole Quenech'Du, Charlotte Cockram, Romain Koszul, Olivier Espéli
Extended sister-chromosome catenation leads to massive reorganization of the E. coli genome. Nucleic acids research 50 (5) (2022)
Isabelle Boutet, Homère J Alves Monteiro, Lyam Baudry, Takeshi Takeuchi, Eric Bonnivard, Bernard Billoud, Sarah Farhat, Ricardo Gonzales-Araya, Benoit Salaun, Ann C Andersen, Jean-Yves Toullec, François H Lallier, Jean-François Flot, Nadège Guiglielmoni, Ximing Guo, Cui Li, Bassem Allam, Emmanuelle Pales-Espinosa, Jakob Hemmer-Hansen, Pierrick Moreau, Martial Marbouty, Romain Koszul, Arnaud Tanguy
Chromosomal assembly of the flat oyster ( Ostrea edulis L.) genome as a new genetic resource for aquaculture. Evolutionary applications 15 (11) (2022)
Quentin Lamy-Besnier, Romain Koszul, Laurent Debarbieux, Martial Marbouty
Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community. Microbiology resource announcements 10 (17) (2021)
Aurèle Piazza, Hélène Bordelet, Agnès Dumont, Agnès Thierry, Jérôme Savocco, Fabien Girard, Romain Koszul
Cohesin regulates homology search during recombinational DNA repair. Nature cell biology 23 (11) (2021)
Martial Marbouty, Agnès Thierry, Gael A Millot, Romain Koszul
MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut. eLife 10 (2021)
Paul Simion, Jitendra Narayan, Antoine Houtain, Alessandro Derzelle, Lyam Baudry, Emilien Nicolas, Rohan Arora, Marie Cariou, Corinne Cruaud, Florence Rodriguez Gaudray, Clément Gilbert, Nadège Guiglielmoni, Boris Hespeels, Djampa K L Kozlowski, Karine Labadie, Antoine Limasset, Marc Llirós, Martial Marbouty, Matthieu Terwagne, Julie Virgo, Richard Cordaux, Etienne G J Danchin, Bernard F Hallet, Romain Koszul, Thomas Lenormand, Jean-François Flot, Karine Van Doninck
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga. Science advances 7 (41) (2021)
Kati Böhm, Giacomo Giacomelli, Andreas Schmidt, Axel Imhof, Romain Koszul, Martial Marbouty, Marc Bramkamp
Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum. Nature communications 11 (1) (2020)
Cyril Matthey-Doret, Lyam Baudry, Axel Breuer, Rémi Montagne, Nadège Guiglielmoni, Vittore F Scolari, Etienne Jean, Arnaud Campeas, Philippe Henri Chanut, Edgar Oriol, Adrien Méot, Laurent Politis, Antoine Vigouroux, Pierrick Moreau, Romain Koszul, Axel Cournac
Computer vision for pattern detection in chromosome contact maps. Nature communications 11 (1) (2020)
Lyam Baudry, Nadège Guiglielmoni, Hervé Marie-Nelly, Alexandre Cormier, Martial Marbouty, Komlan Avia, Yann Loe Mie, Olivier Godfroy, Lieven Sterck, J Mark Cock, Christophe Zimmer, Susana M Coelho, Romain Koszul
instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder. Genome biology 21 (1) (2020)
Jonay Garcia-Luis, Luciana Lazar-Stefanita, Pilar Gutierrez-Escribano, Agnes Thierry, Axel Cournac, Alicia García, Sara González, Mar Sánchez, Adam Jarmuz, Alex Montoya, Marian Dore, Holger Kramer, Mohammad M Karimi, Francisco Antequera, Romain Koszul, Luís Aragón
FACT mediates cohesin function on chromatin. Nature structural & molecular biology 26 (10) (2019)
Héloïse Muller, Vittore F Scolari, Nicolas Agier, Aurèle Piazza, Agnès Thierry, Guillaume Mercy, Stéphane Descorps-Declere, Luciana Lazar-Stefanita, Olivier Espeli, Bertrand Llorente, Gilles Fischer, Julien Mozziconacci, Romain Koszul
Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C. Molecular systems biology 14 (7) (2018)
Pierrick Moreau, Axel Cournac, Gianna Aurora Palumbo, Martial Marbouty, Shogofa Mortaza, Agnes Thierry, Stefano Cairo, Marc Lavigne, Romain Koszul, Christine Neuveut
Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin. Nature communications 9 (1) (2018)
Guillaume Mercy, Julien Mozziconacci, Vittore F Scolari, Kun Yang, Guanghou Zhao, Agnès Thierry, Yisha Luo, Leslie A Mitchell, Michael Shen, Yue Shen, Roy S K Walker, Weimin Zhang, Yi Wu, Ze-Xiong Xie, Zhou-Qing Luo, Yizhi Cai, Jun-Biao Dai, Huanming Yang, Ying-Jin Yuan, Jef D Boeke, Joel S Bader, Héloïse Muller, Romain Koszul
3D organization of synthetic and scrambled chromosomes. Science (New York, N.Y.) 355 (6329) (2017)
Luciana Lazar-Stefanita, Vittore F Scolari, Guillaume Mercy, Héloise Muller, Thomas M Guérin, Agnès Thierry, Julien Mozziconacci, Romain Koszul
Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle. The EMBO journal 36 (18) (2017)
Martial Marbouty, Lyam Baudry, Axel Cournac, Romain Koszul
Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay. Science advances 3 (2) (2017)