TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors.
Markus HoffmannNico TrummerLeon SchwartzJakub JankowskiHye Kyung LeeLina-Liv WillruthOlga E LazarevaKevin YuanNina BaumgartenFlorian SchmidtJan BaumbachMarcel H SchulzDavid B BlumenthalLothar HennighausenMarkus ListPublished in: GigaScience (2023)
TF-Prioritizer accepts ATAC, DNase, or ChIP sequencing and RNA sequencing data as input and identifies TFs with differential activity, thus offering an understanding of genome-wide gene regulation, potential pathogenesis, and therapeutic targets in biomedical research.