Florian Schmidt

ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 9

Top Venues

GigaScience

Nucleic acids research

F1000Research

Biological chemistry

Genome Institute of Singapore

Saarland University (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Genome Institute of Singapore Jul 15 2019

Singapore

Postdoctoral Fellow :: Computational & Systems Biology 6 (Prabhakar Lab)

Cluster of Excellence on Multimodal Computing and Interaction Apr 12 2015 - May 31 2019

Germany

PhD student :: High throughput genomics and systems biology

Genome Institute of Singapore

Singapore

Visiting researcher :: Göke Lab

Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

Germany

Researcher

Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

Germany

Internship

German Cancer Research Center

Germany

Internship :: Theoretical Bioinformatics

Education History

Saarland University Apr 15 2013 - Mar 31 2015

Germany

MSC :: Center for Bioinformatics

Saarland University Oct 14 2010 - Mar 31 2013

Germany

BSC :: Center for Bioinformatics

Publications

Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Jan Grau, Florian Schmidt, Marcel H Schulz
Widespread effects of DNA methylation and intra-motif dependencies revealed by novel transcription factor binding models. Nucleic acids research (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Florian Schmidt, Bobby Ranjan, Quy Xiao Xuan Lin, Vaidehi Krishnan, Ignasius Joanito, Mohammad Amin Honardoost, Zahid Nawaz, Prasanna Nori Venkatesh, Joanna Tan, Nirmala Arul Rayan, Sin Tiong Ong, Shyam Prabhakar
RCA2: a scalable supervised clustering algorithm that reduces batch effects in scRNA-seq data. Nucleic acids research 49 (15) (2021)
Florian Schmidt, Alexander Marx, Nina Baumgarten, Marie Hebel, Martin Wegner, Manuel Kaulich, Matthias S Leisegang, Ralf P Brandes, Jonathan Göke, Jilles Vreeken, Marcel H Schulz
Integrative analysis of epigenetics data identifies gene-specific regulatory elements. Nucleic acids research 49 (18) (2021)
Nina Baumgarten, Florian Schmidt, Martin Wegner, Marie Hebel, Manuel Kaulich, Marcel H Schulz
Computational prediction of CRISPR-impaired non-coding regulatory regions. Biological chemistry 402 (8) (2021)
Fatemeh Behjati Ardakani, Florian Schmidt, Marcel H Schulz
Predicting transcription factor binding using ensemble random forest models. F1000Research (2018)
Fatemeh Behjati Ardakani, Florian Schmidt, Marcel H Schulz
Predicting transcription factor binding using ensemble random forest models. F1000Research 7 (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Florian Schmidt