Jan Baumbach

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 59

Top Venues

bioRxiv : the preprint server for biology

Nucleic acids research

Nature communications

Journal of medical Internet research

Technical University Munich

University of California San Francisco (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Technical University Munich Jan 01 2018

Germany

Chair and Professor :: Experimental Bioinformatics

Syddansk Universitet

Denmark

Professor, Head of Computational BioMedicine program :: Institute of Mathematics and Computer Science

Max-Planck-Institut für Informatik

Germany

Independent Group Leader :: Computational Systems Biology

Education History

University of California San Francisco

United States

PHD :: Computer Graphics Lab

Rothamsted Research

United Kingdom

MSC :: Bioinformatics

Publications

Fabian Westhaeusser, Patrick Fuhlert, Esther Dietrich, Maximilian Lennartz, Robin Khatri, Nico Kaiser, Pontus Röbeck, Roman David Bülow, Saskia von Stillfried, Anja Witte, Sam Ladjevardi, Anders Drotte, Peter Severgardh, Jan Baumbach, Victor G Puelles, Michael Häggman, Michael Brehler, Peter Boor, Peter Walhagen, Anca Dragomir, Christer Busch, Markus Graefen, Ewert Bengtsson, Guido Sauter, Marina Zimmermann, Stefan Bonn
Robust, credible, and interpretable AI-based histopathological prostate cancer grading. medRxiv : the preprint server for health sciences (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Fabian Westhaeusser, Patrick Fuhlert, Esther Dietrich, Maximilian Lennartz, Robin Khatri, Nico Kaiser, Pontus Röbeck, Roman David Bülow, Saskia von Stillfried, Anja Witte, Sam Ladjevardi, Anders Drotte, Peter Severgardh, Jan Baumbach, Victor G Puelles, Michael Häggman, Michael Brehler, Peter Boor, Peter Walhagen, Anca Dragomir, Christer Busch, Markus Graefen, Ewert Bengtsson, Guido Sauter, Marina Zimmermann, Stefan Bonn
Robust, credible, and interpretable AI-based histopathological prostate cancer grading. medRxiv : the preprint server for health sciences (2024)
Chit Tong Lio, Tolga Düz, Markus Hoffmann, Lina-Liv Willruth, Jan Baumbach, Markus List, Olga Tsoy
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions. bioRxiv : the preprint server for biology (2024)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fritz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-González, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. Nucleic acids research (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Fabian Westhaeusser, Patrick Fuhlert, Esther Dietrich, Maximilian Lennartz, Robin Khatri, Nico Kaiser, Pontus Röbeck, Roman David Bülow, Saskia von Stillfried, Anja Witte, Sam Ladjevardi, Anders Drotte, Peter Severgardh, Jan Baumbach, Victor G Puelles, Michael Häggman, Michael Brehler, Peter Boor, Peter Walhagen, Anca Dragomir, Christer Busch, Markus Graefen, Ewert Bengtsson, Guido Sauter, Marina Zimmermann, Stefan Bonn
Robust, credible, and interpretable AI-based histopathological prostate cancer grading. medRxiv : the preprint server for health sciences (2024)
Chit Tong Lio, Tolga Düz, Markus Hoffmann, Lina-Liv Willruth, Jan Baumbach, Markus List, Olga Tsoy
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions. bioRxiv : the preprint server for biology (2024)
Gihanna Galindez, Markus List, Jan Baumbach, Linus Völker, Ulrike Mäder, David B Blumenthal, Tim Kacprowski
Inference of differential gene regulatory networks using boosted differential trees. Bioinformatics advances 4 (1) (2024)
Gihanna Galindez, Markus List, Jan Baumbach, Linus Völker, Ulrike Mäder, David B Blumenthal, Tim Kacprowski
Inference of differential gene regulatory networks using boosted differential trees. Bioinformatics advances 4 (1) (2024)
Julian Späth, Zeno Sewald, Niklas Probul, Magali Berland, Mathieu Almeida, Nicolas Pons, Emmanuelle Le Chatelier, Pere Ginès, Cristina Solé, Adrià Juanola, Josch Konstantin Pauling, Jan Baumbach
Privacy-Preserving Federated Survival Support Vector Machines for Cross-Institutional Time-To-Event Analysis: Algorithm Development and Validation. JMIR AI 3 (2024)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fritz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-González, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. Nucleic acids research (2024)
Julian Späth, Zeno Sewald, Niklas Probul, Magali Berland, Mathieu Almeida, Nicolas Pons, Emmanuelle Le Chatelier, Pere Ginès, Cristina Solé, Adrià Juanola, Josch Konstantin Pauling, Jan Baumbach
Privacy-Preserving Federated Survival Support Vector Machines for Cross-Institutional Time-To-Event Analysis: Algorithm Development and Validation. JMIR AI 3 (2024)
Chit Tong Lio, Tolga Düz, Markus Hoffmann, Lina-Liv Willruth, Jan Baumbach, Markus List, Olga Tsoy
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions. bioRxiv : the preprint server for biology (2024)
Julian Späth, Zeno Sewald, Niklas Probul, Magali Berland, Mathieu Almeida, Nicolas Pons, Emmanuelle Le Chatelier, Pere Ginès, Cristina Solé, Adrià Juanola, Josch Konstantin Pauling, Jan Baumbach
Privacy-Preserving Federated Survival Support Vector Machines for Cross-Institutional Time-To-Event Analysis: Algorithm Development and Validation. JMIR AI 3 (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Chit Tong Lio, Gordon Grabert, Zakaria Louadi, Amit Fenn, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy
Systematic analysis of alternative splicing in time course data using Spycone. Bioinformatics (Oxford, England) 39 (1) (2023)
Markus Hoffmann, Lina-Liv Willruth, Alexander Dietrich, Hye Kyung Lee, Ludwig Knabl, Nico Trummer, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2. bioRxiv : the preprint server for biology (2023)
Amit Fenn, Olga Tsoy, Tim Faro, Fanny L M Rößler, Alexander Dietrich, Johannes Kersting, Zakaria Louadi, Chit Tong Lio, Linus Völker, Jan Baumbach, Tim Kacprowski, Markus List
Alternative splicing analysis benchmark with DICAST. NAR genomics and bioinformatics 5 (2) (2023)
Alissa Brauneck, Louisa Schmalhorst, Mohammad Mahdi Kazemi Majdabadi, Mohammad Bakhtiari, Linus Völker, Jan Baumbach, Linda Baumbach, Gabriele Buchholtz
Federated Machine Learning, Privacy-Enhancing Technologies, and Data Protection Laws in Medical Research: Scoping Review. Journal of medical Internet research 25 (2023)
Mhaned Oubounyt, Maria L Elkjaer, Tanja Laske, Alexander G B Grønning, Marcus J Moeller, Jan Baumbach
De-novo reconstruction and identification of transcriptional gene regulatory network modules differentiating single-cell clusters. NAR genomics and bioinformatics 5 (1) (2023)
Aylin Del Moral-Morales, Marisol Salgado-Albarrán, Yesennia Sánchez-Pérez, Nina Kerstin Wenke, Jan Baumbach, Ernesto Soto-Reyes
CTCF and Its Multi-Partner Network for Chromatin Regulation. Cells 12 (10) (2023)
Alissa Brauneck, Louisa Schmalhorst, Mohammad Mahdi Kazemi Majdabadi, Mohammad Bakhtiari, Linus Völker, Jan Baumbach, Linda Baumbach, Gabriele Buchholtz
Federated Machine Learning, Privacy-Enhancing Technologies, and Data Protection Laws in Medical Research: Scoping Review. Journal of medical Internet research 25 (2023)
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer, Lina-Liv Willruth, Jakub Jankowski, Hye Kyung Lee, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging. bioRxiv : the preprint server for biology (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Klaudia Adamowicz, Lis Arend, Andreas Maier, Johannes R Schmidt, Bernhard Kuster, Olga Tsoy, Olga Zolotareva, Jan Baumbach, Tanja Laske
Proteomic meta-study harmonization, mechanotyping and drug repurposing candidate prediction with ProHarMeD. NPJ systems biology and applications 9 (1) (2023)
Sebastian Lobentanzer, Patrick Aloy, Jan Baumbach, Balazs Bohar, Vincent J Carey, Pornpimol Charoentong, Katharina Danhauser, Tunca Doğan, Johann Dreo, Ian Dunham, Elias Farr, Adrià Fernandez-Torras, Benjamin M Gyori, Michael Hartung, Charles Tapley Hoyt, Christoph Klein, Tamas Korcsmaros, Andreas Maier, Matthias Mann, David Ochoa, Elena Pareja-Lorente, Ferdinand Popp, Martin Preusse, Niklas Probul, Benno Schwikowski, Bünyamin Sen, Maximillian T Strauss, Denes Turei, Erva Ulusoy, Dagmar Waltemath, Judith A H Wodke, Julio Saez-Rodriguez
Democratizing knowledge representation with BioCypher. Nature biotechnology (2023)
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer, Lina-Liv Willruth, Jakub Jankowski, Hye Kyung Lee, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging. bioRxiv : the preprint server for biology (2023)
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer, Lina-Liv Willruth, Jakub Jankowski, Hye Kyung Lee, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging. bioRxiv : the preprint server for biology (2023)
Sepideh Sadegh, James Skelton, Elisa Anastasi, Andreas Maier, Klaudia Adamowicz, Anna Möller, Nils M Kriege, Jaanika Kronberg, Toomas Haller, Tim Kacprowski, Anil Wipat, Jan Baumbach, David B Blumenthal
Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond. Nature communications 14 (1) (2023)
Alissa Brauneck, Louisa Schmalhorst, Mohammad Mahdi Kazemi Majdabadi, Mohammad Bakhtiari, Linus Völker, Jan Baumbach, Linda Baumbach, Gabriele Buchholtz
Federated Machine Learning, Privacy-Enhancing Technologies, and Data Protection Laws in Medical Research: Scoping Review. Journal of medical Internet research 25 (2023)
Lena Maria Hackl, Amit Fenn, Zakaria Louadi, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy
Alternative splicing impacts microRNA regulation within coding regions. NAR genomics and bioinformatics 5 (3) (2023)
Chit Tong Lio, Gordon Grabert, Zakaria Louadi, Amit Fenn, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy
Systematic analysis of alternative splicing in time course data using Spycone. Bioinformatics (Oxford, England) 39 (1) (2023)
Sepideh Sadegh, James Skelton, Elisa Anastasi, Andreas Maier, Klaudia Adamowicz, Anna Möller, Nils M Kriege, Jaanika Kronberg, Toomas Haller, Tim Kacprowski, Anil Wipat, Jan Baumbach, David B Blumenthal
Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond. Nature communications 14 (1) (2023)
Shraddha Pai, Shirley Hui, Philipp Weber, Soumil Narayan, Owen Whitley, Peipei Li, Viviane Labrie, Jan Baumbach, Anne L Wheeler, Gary D Baider
Multi-scale systems genomics analysis predicts pathways, cell types, and drug targets involved in normative variation in peri-adolescent human cognition. Cerebral cortex (New York, N.Y. : 1991) (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Julian Matschinske, Julian Späth, Mohammad Bakhtiari, Niklas Probul, Mohammad Mahdi Kazemi Majdabadi, Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Anne Hartebrodt, Balazs-Attila Orban, Sándor-József Fejér, Olga I Zolotareva, Supratim Das, Linda Baumbach, Josch Konstantin Pauling, Olivera Tomašević, Béla Bihari, Marcus D Bloice, Nina C Donner, Walid Fdhila, Tobias Frisch, Anne-Christin Hauschild, Dominik Heider, Andreas Philipp Hassler, Walter Hötzendorfer, Jan Hospes, Tim Kacprowski, Markus Kastelitz, Markus List, Rudolf Mayer, Mónika Moga, Heimo Müller, Anastasia Pustozerova, Richard Röttger, Christina C Saak, Anna Saranti, Harald H H W Schmidt, Christof Tschohl, Nina Kerstin Wenke, Jan Baumbach
The FeatureCloud Platform for Federated Learning in Biomedicine: Unified Approach. Journal of medical Internet research 25 (2023)
Mhaned Oubounyt, Maria L Elkjaer, Tanja Laske, Alexander G B Grønning, Marcus J Moeller, Jan Baumbach
De-novo reconstruction and identification of transcriptional gene regulatory network modules differentiating single-cell clusters. NAR genomics and bioinformatics 5 (1) (2023)
Sepideh Sadegh, James Skelton, Elisa Anastasi, Andreas Maier, Klaudia Adamowicz, Anna Möller, Nils M Kriege, Jaanika Kronberg, Toomas Haller, Tim Kacprowski, Anil Wipat, Jan Baumbach, David B Blumenthal
Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond. Nature communications 14 (1) (2023)
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer, Lina-Liv Willruth, Jakub Jankowski, Hye Kyung Lee, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging. Bioinformatics advances 3 (1) (2023)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fitz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Kerstin Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-Gonzalez, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. medRxiv : the preprint server for health sciences (2023)
Parvinderdeep S Kahlon, Andrea Förner, Michael Muser, Mhaned Oubounyt, Michael Gigl, Richard Hammerl, Jan Baumbach, Ralph Hückelhoven, Corinna Dawid, Remco Stam
Laminarin-triggered defence responses are geographically dependent for natural populations of Solanum chilense. Journal of experimental botany (2023)
Manuela Lautizi, Jan Baumbach, Wilko Weichert, Katja Steiger, Markus List, Nicole Pfarr, Tim Kacprowski
The limits of molecular signatures for pancreatic ductal adenocarcinoma subtyping. NAR cancer 4 (4) (2022)
Marisol Salgado-Albarrán, Julian Späth, Rodrigo González-Barrios, Jan Baumbach, Ernesto Soto-Reyes
CTCFL regulates the PI3K-Akt pathway and it is a target for personalized ovarian cancer therapy. NPJ systems biology and applications 8 (1) (2022)
Melissa Klug, Kilian Kirmes, Jiaying Han, Olga E Lazareva, Marc Rosenbaum, Giacomo Viggiani, Moritz von Scheidt, Juergen Ruland, Jan Baumbach, Gianluigi Condorelli, Karl-Ludwig Laugwitz, Markus List, Isabell Bernlochner, Dario Bongiovanni
Mass cytometry of platelet-rich plasma: a new approach to analyze platelet surface expression and reactivity. Platelets 33 (6) (2021)
Alexander G B Grønning, Mhaned Oubounyt, Kristiyan Kanev, Jesper Lund, Tim Kacprowski, Dietmar Zehn, Richard Röttger, Jan Baumbach
Enabling single-cell trajectory network enrichment. Nature computational science 1 (2) (2021)
Gihanna Galindez, Julian Matschinske, Tim Daniel Rose, Sepideh Sadegh, Marisol Salgado-Albarrán, Julian Späth, Jan Baumbach, Josch Konstantin Pauling
Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies. Nature computational science 1 (1) (2021)
Michael Scherer, Florian Schmidt, Olga Lazareva, Jörn Walter, Jan Baumbach, Marcel H Schulz, Markus List
Machine learning for deciphering cell heterogeneity and gene regulation. Nature computational science 1 (3) (2021)
Julian Matschinske, Nicolas Alcaraz, Arriel Benis, Martin Golebiewski, Dominik G Grimm, Lukas Heumos, Tim Kacprowski, Olga Lazareva, Markus List, Zakaria Louadi, Josch K Pauling, Nico Pfeifer, Richard Röttger, Veit Schwämmle, Gregor Sturm, Alberto Traverso, Kristel Van Steen, Martiela Vaz de Freitas, Gerda Cristal Villalba Silva, Leonard Wee, Nina Kerstin Wenke, Massimiliano Zanin, Olga I Zolotareva, Jan Baumbach, David B Blumenthal
The AIMe registry for artificial intelligence in biomedical research. Nature methods 18 (10) (2021)
Sepideh Sadegh, James Skelton, Elisa Anastasi, Judith Bernett, David B Blumenthal, Gihanna Galindez, Marisol Salgado-Albarrán, Olga Lazareva, Keith Flanagan, Simon Cockell, Cristian Nogales, Ana I Casas, Harald H H W Schmidt, Jan Baumbach, Anil Wipat, Tim Kacprowski
Network medicine for disease module identification and drug repurposing with the NeDRex platform. Nature communications 12 (1) (2021)
Marisol Salgado-Albarrán, Erick I Navarro-Delgado, Aylin Del Moral-Morales, Nicolas Alcaraz, Jan Baumbach, Rodrigo González-Barrios, Ernesto Soto-Reyes
Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection. NPJ systems biology and applications 7 (1) (2021)
Michael Scherer, Florian Schmidt, Olga Lazareva, Jörn Walter, Jan Baumbach, Marcel H Schulz, Markus List
Machine learning for deciphering cell heterogeneity and gene regulation. Nature computational science 1 (3) (2021)
Edwin K Silverman, Harald H H W Schmidt, Eleni Anastasiadou, Lucia Altucci, Marco Angelini, Lina Badimón, Jean-Luc Balligand, Giuditta Benincasa, Giovambattista Capasso, Federica Conte, Antonella Di Costanzo, Lorenzo Farina, Giulia Fiscon, Laurent Gatto, Michele Gentili, Joseph Loscalzo, Cinzia Marchese, Claudio Napoli, Paola Paci, Manuela Petti, John Quackenbush, Paolo Tieri, Davide Viggiano, Gemma Vilahur, Kimberly Glass, Jan Baumbach
Molecular networks in Network Medicine: Development and applications. Wiley interdisciplinary reviews. Systems biology and medicine 12 (6) (2020)
Bradley A Maron, Lucia Altucci, Jean-Luc Balligand, Jan Baumbach, Peter Ferdinandy, Sebastiano Filetti, Paolo Parini, Enrico Petrillo, Edwin K Silverman, Albert-László Barabási, Joseph Loscalzo, null null
A global network for network medicine. NPJ systems biology and applications 6 (1) (2020)
Weilong Li, Jan Baumbach, Martin Jakob Larsen, Afsaneh Mohammadnejad, Jesper Beltoft Lund, Kaare Christensen, Lene Christiansen, Qihua Tan
Differential long noncoding RNA profiling of BMI in twins. Epigenomics 12 (17) (2020)
Sepideh Sadegh, Julian Matschinske, David B Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K Wenke, Kevin Yuan, Josch K Pauling, Jan Baumbach
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing. Nature communications 11 (1) (2020)
Justus Wolff, Josch Konstantin Pauling, Andreas Keck, Jan Baumbach
The Economic Impact of Artificial Intelligence in Health Care: Systematic Review. Journal of medical Internet research 22 (2) (2020)

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Publication Activity (10 Years)

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Jan Baumbach