David B Blumenthal

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 33

Top Venues

Nucleic acids research

EMBO reports

Nature communications

Briefings in bioinformatics

Technical University Munich

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Technical University Munich Jan 10 2019

Germany

Postdoctoral Researcher :: Chair of Experimental Bioinformatics

Free University of Bozen-Bolzano Nov 01 2015 - Sep 30 2019

Italy

Ph.D. Student :: Faculty of Computer Science

Publications

Judith Bernett, David B Blumenthal, Markus List
Cracking the black box of deep sequence-based protein-protein interaction prediction. Briefings in bioinformatics 25 (2) (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Judith Bernett, David B Blumenthal, Dominik G Grimm, Florian Haselbeck, Roman Joeres, Olga V Kalinina, Markus List
Guiding questions to avoid data leakage in biological machine learning applications. Nature methods 21 (8) (2024)
Dan-Dan Wang, Mitali Katoch, Samir Jabari, Ingmar Bluemcke, David B Blumenthal, De-Hong Lu, Roland Coras, Yu-Jiao Wang, Jie Shi, Wen-Jing Zhou, Katja Kobow, Yue-Shan Piao
Correction to: The specific DNA methylation landscape in focal cortical dysplasia ILAE type 3D. Acta neuropathologica communications 12 (1) (2024)
Constantin Menche, Harald Schuhwerk, Isabell Armstark, Pooja Gupta, Kathrin Fuchs, Ruthger van Roey, Mohammed H Mosa, Anne Hartebrodt, Yussuf Hajjaj, Ana Clavel Ezquerra, Manoj K Selvaraju, Carol I Geppert, Stefanie Bärthel, Dieter Saur, Florian R Greten, Simone Brabletz, David B Blumenthal, Andreas Weigert, Thomas Brabletz, Henner F Farin, Marc P Stemmler
ZEB1-mediated fibroblast polarization controls inflammation and sensitivity to immunotherapy in colorectal cancer. EMBO reports 25 (8) (2024)
Constantin Menche, Harald Schuhwerk, Isabell Armstark, Pooja Gupta, Kathrin Fuchs, Ruthger van Roey, Mohammed H Mosa, Anne Hartebrodt, Yussuf Hajjaj, Ana Clavel Ezquerra, Manoj K Selvaraju, Carol I Geppert, Stefanie Bärthel, Dieter Saur, Florian R Greten, Simone Brabletz, David B Blumenthal, Andreas Weigert, Thomas Brabletz, Henner F Farin, Marc P Stemmler
ZEB1-mediated fibroblast polarization controls inflammation and sensitivity to immunotherapy in colorectal cancer. EMBO reports 25 (8) (2024)
Judith Bernett, David B Blumenthal, Markus List
Cracking the black box of deep sequence-based protein-protein interaction prediction. Briefings in bioinformatics 25 (2) (2024)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fritz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-González, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. Nucleic acids research (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Dan-Dan Wang, Mitali Katoch, Samir Jabari, Ingmar Bluemcke, David B Blumenthal, De-Hong Lu, Roland Coras, Yu-Jiao Wang, Jie Shi, Wen-Jing Zhou, Katja Kobow, Yue-Shan Piao
Correction to: The specific DNA methylation landscape in focal cortical dysplasia ILAE type 3D. Acta neuropathologica communications 12 (1) (2024)
Constantin Menche, Harald Schuhwerk, Isabell Armstark, Pooja Gupta, Kathrin Fuchs, Ruthger van Roey, Mohammed H Mosa, Anne Hartebrodt, Yussuf Hajjaj, Ana Clavel Ezquerra, Manoj K Selvaraju, Carol I Geppert, Stefanie Bärthel, Dieter Saur, Florian R Greten, Simone Brabletz, David B Blumenthal, Andreas Weigert, Thomas Brabletz, Henner F Farin, Marc P Stemmler
ZEB1-mediated fibroblast polarization controls inflammation and sensitivity to immunotherapy in colorectal cancer. EMBO reports 25 (8) (2024)
Constantin Menche, Harald Schuhwerk, Isabell Armstark, Pooja Gupta, Kathrin Fuchs, Ruthger van Roey, Mohammed H Mosa, Anne Hartebrodt, Yussuf Hajjaj, Ana Clavel Ezquerra, Manoj K Selvaraju, Carol I Geppert, Stefanie Bärthel, Dieter Saur, Florian R Greten, Simone Brabletz, David B Blumenthal, Andreas Weigert, Thomas Brabletz, Henner F Farin, Marc P Stemmler
ZEB1-mediated fibroblast polarization controls inflammation and sensitivity to immunotherapy in colorectal cancer. EMBO reports 25 (8) (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Constantin Menche, Harald Schuhwerk, Isabell Armstark, Pooja Gupta, Kathrin Fuchs, Ruthger van Roey, Mohammed H Mosa, Anne Hartebrodt, Yussuf Hajjaj, Ana Clavel Ezquerra, Manoj K Selvaraju, Carol I Geppert, Stefanie Bärthel, Dieter Saur, Florian R Greten, Simone Brabletz, David B Blumenthal, Andreas Weigert, Thomas Brabletz, Henner F Farin, Marc P Stemmler
ZEB1-mediated fibroblast polarization controls inflammation and sensitivity to immunotherapy in colorectal cancer. EMBO reports (2024)
Gihanna Galindez, Markus List, Jan Baumbach, Linus Völker, Ulrike Mäder, David B Blumenthal, Tim Kacprowski
Inference of differential gene regulatory networks using boosted differential trees. Bioinformatics advances 4 (1) (2024)
Gihanna Galindez, Markus List, Jan Baumbach, Linus Völker, Ulrike Mäder, David B Blumenthal, Tim Kacprowski
Inference of differential gene regulatory networks using boosted differential trees. Bioinformatics advances 4 (1) (2024)
Judith Bernett, David B Blumenthal, Dominik G Grimm, Florian Haselbeck, Roman Joeres, Olga V Kalinina, Markus List
Guiding questions to avoid data leakage in biological machine learning applications. Nature methods 21 (8) (2024)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fritz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-González, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. Nucleic acids research (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Dan-Dan Wang, Mitali Katoch, Samir Jabari, Ingmar Bluemcke, David B Blumenthal, De-Hong Lu, Roland Coras, Yu-Jiao Wang, Jie Shi, Wen-Jing Zhou, Katja Kobow, Yue-Shan Piao
The specific DNA methylation landscape in focal cortical dysplasia ILAE type 3D. Acta neuropathologica communications 11 (1) (2023)
Anna Ketteler, David B Blumenthal
Demographic confounders distort inference of gene regulatory and gene co-expression networks in cancer. Briefings in bioinformatics 24 (6) (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Sepideh Sadegh, James Skelton, Elisa Anastasi, Andreas Maier, Klaudia Adamowicz, Anna Möller, Nils M Kriege, Jaanika Kronberg, Toomas Haller, Tim Kacprowski, Anil Wipat, Jan Baumbach, David B Blumenthal
Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond. Nature communications 14 (1) (2023)
Sepideh Sadegh, James Skelton, Elisa Anastasi, Andreas Maier, Klaudia Adamowicz, Anna Möller, Nils M Kriege, Jaanika Kronberg, Toomas Haller, Tim Kacprowski, Anil Wipat, Jan Baumbach, David B Blumenthal
Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond. Nature communications 14 (1) (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Sepideh Sadegh, James Skelton, Elisa Anastasi, Andreas Maier, Klaudia Adamowicz, Anna Möller, Nils M Kriege, Jaanika Kronberg, Toomas Haller, Tim Kacprowski, Anil Wipat, Jan Baumbach, David B Blumenthal
Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond. Nature communications 14 (1) (2023)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fitz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Kerstin Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-Gonzalez, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. medRxiv : the preprint server for health sciences (2023)
Julian Matschinske, Nicolas Alcaraz, Arriel Benis, Martin Golebiewski, Dominik G Grimm, Lukas Heumos, Tim Kacprowski, Olga Lazareva, Markus List, Zakaria Louadi, Josch K Pauling, Nico Pfeifer, Richard Röttger, Veit Schwämmle, Gregor Sturm, Alberto Traverso, Kristel Van Steen, Martiela Vaz de Freitas, Gerda Cristal Villalba Silva, Leonard Wee, Nina Kerstin Wenke, Massimiliano Zanin, Olga I Zolotareva, Jan Baumbach, David B Blumenthal
The AIMe registry for artificial intelligence in biomedical research. Nature methods 18 (10) (2021)
Sepideh Sadegh, James Skelton, Elisa Anastasi, Judith Bernett, David B Blumenthal, Gihanna Galindez, Marisol Salgado-Albarrán, Olga Lazareva, Keith Flanagan, Simon Cockell, Cristian Nogales, Ana I Casas, Harald H H W Schmidt, Jan Baumbach, Anil Wipat, Tim Kacprowski
Network medicine for disease module identification and drug repurposing with the NeDRex platform. Nature communications 12 (1) (2021)
Olga E Lazareva, Jan Baumbach, Markus List, David B Blumenthal
On the limits of active module identification. Briefings in bioinformatics 22 (5) (2021)
David B Blumenthal, Jan Baumbach, Markus Hoffmann, Tim Kacprowski, Markus List
A framework for modeling epistatic interaction. Bioinformatics (Oxford, England) 37 (12) (2021)
Sepideh Sadegh, Julian Matschinske, David B Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K Wenke, Kevin Yuan, Josch K Pauling, Jan Baumbach
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing. Nature communications 11 (1) (2020)

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Publication Activity (10 Years)

Top Topics

Top Venues

David B Blumenthal