Integrative biology : quantitative biosciences from nano to macro

Keyphrases

Publications

volume 16, 2024

Floriane Poignant, Eloise Pariset, Ianik Plante, Artem L Ponomarev, Trevor Evain, Louise Viger, Tony C Slaba, Steve R Blattnig, Sylvain V Costes
DNA break clustering as a predictor of cell death across various radiation qualities: influence of cell size, cell asymmetry, and beam orientation. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Zachary Kirchner, Anna Geohagan, Agnieszka Truszkowska
A Vicsek-type model of confined cancer cells with variable clustering affinities. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Michael Pyecraft Hughes
The cellular zeta potential: cell electrophysiology beyond the membrane. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Joseph Siegfreid, Ali Crampton, Saghi Saghazadeh, Randilynn Christensen, Jacob Notbohm, Jason Bjork, Bryan Baker
An integrative biology approach to understanding keratinocyte collective migration as stimulated by bioglass. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Xi Wu, Nikola Cesarovic, Volkmar Falk, Edoardo Mazza, Costanza Giampietro
Mechanical factors influence β-catenin localization and barrier properties. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Manfredi di San Germano, J Krishnan
A systems framework for investigating the roles of multiple transporters and their impact on drug resistance. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Michael Yeh, Emanuel Salazar-Cavazos, Anagha Krishnan, Grégoire Altan-Bonnet, Don L DeVoe
Probing T-cell activation in nanoliter tumor co-cultures using membrane displacement trap arrays. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Jessica Conway, Animesh Acharjee, Niharika A Duggal
Integrated analysis revealing novel associations between dietary patterns and the immune system in older adults. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Michael Pyecraft Hughes
The cellular zeta potential: cell electrophysiology beyond the membrane. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Zeinab Nematollahi, Shiva Karimian, Ali Taghavirashidizadeh, Mohammad Darvishi, SeyedAbbas Pakmehr, Amin Erfan, Mohammad Javad Teimoury, Neda Mansouri, Iraj Alipourfard
Hub genes, key miRNAs and interaction analyses in type 2 diabetes mellitus: an integrative in silico approach. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Michael Yeh, Emanuel Salazar-Cavazos, Anagha Krishnan, Grégoire Altan-Bonnet, Don L DeVoe
Probing T-cell activation in nanoliter tumor co-cultures using membrane displacement trap arrays. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Yuika Ueda, Daiki Matsunaga, Shinji Deguchi
Asymmetric response emerges between creation and disintegration of force-bearing subcellular structures as revealed by percolation analysis. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Russell Whelan, Daniel Lih, Jun Xue, Jonathan Himmelfarb, Ying Zheng
Modeling Shiga toxin-induced human renal-specific microvascular injury. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Wei Fu, Shujing Wang, Qi Ouyang, Chun-Xiong Luo
A multilayer microfluidic system for studies of the dynamic responses of cellular proteins to oxygen switches at the single-cell level. Integrative biology : quantitative biosciences from nano to macro 16 (2024)
Xi Wu, Nikola Cesarovic, Volkmar Falk, Edoardo Mazza, Costanza Giampietro
Mechanical factors influence β-catenin localization and barrier properties. Integrative biology : quantitative biosciences from nano to macro 16 (2024)

2023

Patrick H McMinn, Adeel Ahmed, Anna Huttenlocher, David J Beebe, Sheena C Kerr
The lymphatic endothelium-derived follistatin: activin A axis regulates neutrophil motility in response to Pseudomonas aeruginosa. Integrative biology : quantitative biosciences from nano to macro (2023)
Nieves Movilla, Inês G Gonçalves, Carlos Borau, José Manuel García Aznar
A novel integrated experimental and computational approach to unravel fibroblast motility in response to chemical gradients in 3D collagen matrices. Integrative biology : quantitative biosciences from nano to macro (2023)
Jerry Z Yao, Igor F Tsigelny, Santosh Kesari, Valentina L Kouznetsova
Diagnostics of ovarian cancer via metabolite analysis and machine learning. Integrative biology : quantitative biosciences from nano to macro (2023)
Patrick H McMinn, Adeel Ahmed, Anna Huttenlocher, David J Beebe, Sheena C Kerr
The lymphatic endothelium-derived follistatin: activin A axis regulates neutrophil motility in response to Pseudomonas aeruginosa. Integrative biology : quantitative biosciences from nano to macro (2023)
David R Mertz, Eric Parigoris, Jason Sentosa, Ji-Hoon Lee, Soojung Lee, Celina G Kleer, Gary Luker, Shuichi Takayama
Triple-negative breast cancer cells invade adipocyte/preadipocyte-encapsulating geometrically inverted mammary organoids. Integrative biology : quantitative biosciences from nano to macro (2023)
Andrea I Hernandez, Raíza Dos Santos Azevedo, Adriano V Werhli, Karina Dos Santos Machado, Bruna F Nornberg, Luis Fernando Marins
Phylogenetic analysis, computer modeling and catalytic prediction of an Amazonian soil β-glucosidase against a soybean saponin. Integrative biology : quantitative biosciences from nano to macro (2023)
Suman Gare, Soumita Chel, T K Abhinav, Vaibhav Dhyani, Soumya Jana, Lopamudra Giri
Mapping of structural arrangement of cells and collective calcium transients: an integrated framework combining live cell imaging using confocal microscopy and UMAP-assisted HDBSCAN-based approach. Integrative biology : quantitative biosciences from nano to macro (2023)

volume 15, 2023

Pramod K Avti, Jitender Singh, Divya Dahiya, Krishan L Khanduja
Dual functionality of pyrimidine and flavone in targeting genomic variants of EGFR and ER receptors to influence the differential survival rates in breast cancer patients. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Rahul Tripathi, Pravir Kumar
Preliminary study to identify CXCR4 inhibitors as potential therapeutic agents for Alzheimer's and Parkinson's diseases. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Shalini Sharma, Pruthvi Gowda, Kirti Lathoria, Mithun K Mitra, Ellora Sen
Dynamic modelling predicts lactate and IL-1β as interventional targets in metabolic-inflammation-clock regulatory loop in glioma. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Takashi Inagaki, Jeonghyun Kim, Kosei Tomida, Eijiro Maeda, Takeo Matsumoto
3D quantitative assessment for nuclear morphology in osteocytic spheroid with optical clearing technique. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Natalia Moreno Castellanos, Elías Cuartas-Gómez, Óscar A Vargas
Collagen microgel to simulate the adipocyte microenvironment for in vitro research on obesity. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Pramod K Avti, Jitender Singh, Divya Dahiya, Krishan L Khanduja
Dual functionality of pyrimidine and flavone in targeting genomic variants of EGFR and ER receptors to influence the differential survival rates in breast cancer patients. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Chau Ly, Heather Ogana, Hye Na Kim, Samantha Hurwitz, Eric J Deeds, Yong-Mi Kim, Amy C Rowat
Altered physical phenotypes of leukemia cells that survive chemotherapy treatment. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Bernard L Cook, Patrick W Alford
Continuum interpretation of mechano-adaptation in micropatterned epithelia informed by in vitro experiments. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Katarina C Klett, Briana C Martin-Villa, Victoria S Villarreal, Stavros Melemenidis, Vignesh Viswanathan, Rakesh Manjappa, M Ramish Ashraf, Luis Soto, Brianna Lau, Suparna Dutt, Erinn B Rankin, Billy W Loo, Sarah C Heilshorn
Human enteroids as a tool to study conventional and ultra-high dose rate radiation. Integrative biology : quantitative biosciences from nano to macro 15 (2023)
Leonardo R Nunn, Terry D Juang, David J Beebe, Nicolas J Wheeler, Mostafa Zamanian
A high-throughput sensory assay for parasitic and free-living nematodes. Integrative biology : quantitative biosciences from nano to macro 15 (2023)

volume 14, number 8-12, 2023

Dan Wang, Snehal Sant, Craig Lawless, Nicholas J Ferrell
A kidney proximal tubule model to evaluate effects of basement membrane stiffening on renal tubular epithelial cells. Integrative biology : quantitative biosciences from nano to macro 14 (8-12) (2023)
Nieves Movilla, Inês G Gonçalves, Carlos Borau, José Manuel García Aznar
A novel integrated experimental and computational approach to unravel fibroblast motility in response to chemical gradients in 3D collagen matrices. Integrative biology : quantitative biosciences from nano to macro 14 (8-12) (2023)
Andrea I Hernandez, Raíza Dos Santos Azevedo, Adriano V Werhli, Karina Dos Santos Machado, Bruna F Nornberg, Luis Fernando Marins
Phylogenetic analysis, computer modeling and catalytic prediction of an Amazonian soil β-glucosidase against a soybean saponin. Integrative biology : quantitative biosciences from nano to macro 14 (8-12) (2023)
Suman Gare, Soumita Chel, T K Abhinav, Vaibhav Dhyani, Soumya Jana, Lopamudra Giri
Mapping of structural arrangement of cells and collective calcium transients: an integrated framework combining live cell imaging using confocal microscopy and UMAP-assisted HDBSCAN-based approach. Integrative biology : quantitative biosciences from nano to macro 14 (8-12) (2023)

volume 14, number 1, 2022

Jennifer L Wilson, Alessio Gravina, Kevin Grimes
From random to predictive: a context-specific interaction framework improves selection of drug protein-protein interactions for unknown drug pathways. Integrative biology : quantitative biosciences from nano to macro 14 (1) (2022)
Stephen Robinson, Eric Parigoris, Jonathan Chang, Louise Hecker, Shuichi Takayama
Contracting scars from fibrin drops. Integrative biology : quantitative biosciences from nano to macro 14 (1) (2022)

volume 14, number 2, 2022

Kalaivani Paramasivan, Aneesha Abdulla, Nabarupa Gupta, Sarma Mutturi
In silico target-based strain engineering of Saccharomyces cerevisiae for terpene precursor improvement. Integrative biology : quantitative biosciences from nano to macro 14 (2) (2022)
Ariella D Simoni, Holly A Huber, Senta K Georgia, Stacey D Finley
Phosphatases are predicted to govern prolactin-mediated JAK-STAT signaling in pancreatic beta cells. Integrative biology : quantitative biosciences from nano to macro 14 (2) (2022)

volume 14, number 3, 2022

Christina Mark, Natalie S Callander, Kenny Chng, Shigeki Miyamoto, Jay Warrick
Timelapse viability assay to detect division and death of primary multiple myeloma cells in response to drug treatments with single cell resolution. Integrative biology : quantitative biosciences from nano to macro 14 (3) (2022)
Sujeewa S Lellupitiyage Don, Javier A Mas-Rosario, Hui-Hsien Lin, Evelyn M Nguyen, Stephanie R Taylor, Michelle E Farkas
Macrophage circadian rhythms are differentially affected based on stimuli. Integrative biology : quantitative biosciences from nano to macro 14 (3) (2022)

volume 14, number 4, 2022

Sukanya Gayan, Gargee Joshi, Tuli Dey
Biomarkers of mitochondrial origin: a futuristic cancer diagnostic. Integrative biology : quantitative biosciences from nano to macro 14 (4) (2022)
Omkar Indari, Deeksha Tiwari, Manushree Tanwar, Rajesh Kumar, Hem Chandra Jha
Early biomolecular changes in brain microvascular endothelial cells under Epstein-Barr virus influence: a Raman microspectroscopic investigation. Integrative biology : quantitative biosciences from nano to macro 14 (4) (2022)

volume 14, number 5, 2022

Ali Emadi, Mustafa Ozen, Ali Abdi
A hybrid model to study how late long-term potentiation is affected by faulty molecules in an intraneuronal signaling network regulating transcription factor CREB. Integrative biology : quantitative biosciences from nano to macro 14 (5) (2022)
Meltem Kutnu, Elif Tekin İşlerel, Nurcan Tunçbağ, Gülay Özcengiz
Comparative biological network analysis for differentially expressed proteins as a function of bacilysin biosynthesis in Bacillus subtilis. Integrative biology : quantitative biosciences from nano to macro 14 (5) (2022)

volume 14, number 7, 2022

Chitra Manoharan, Dyna Susan Thomas, Rasalkar Sandhya Yashwant, Manjunatha Panduranga Mudagal, Suresh Janadri, Gourab Roy, Vijayan Kunjupillai, Rakesh Kumar Mishra, Ravikumar Gopalapillai
Bioengineered and functionalized silk proteins accelerate wound healing in rat and human dermal fibroblasts. Integrative biology : quantitative biosciences from nano to macro 14 (7) (2022)
Arezoo Khalili, Ellen van Wijngaarden, Georg R Zoidl, Pouya Rezai
Simultaneous screening of zebrafish larvae cardiac and respiratory functions: a microfluidic multi-phenotypic approach. Integrative biology : quantitative biosciences from nano to macro 14 (7) (2022)

volume 13, number 9, 2022

Agnes M Resto Irizarry, Sajedeh Nasr Esfahani, Yi Zheng, Robin Zhexuan Yan, Patrick Kinnunen, Jianping Fu
Machine learning-assisted imaging analysis of a human epiblast model. Integrative biology : quantitative biosciences from nano to macro 13 (9) (2022)
Anish Jadav, Kevin Truong
Creation of a synthesis-friendly inflammation-inducible promoter suitable for cell therapy. Integrative biology : quantitative biosciences from nano to macro 13 (9) (2022)