Aaron Streets

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 11

Top Topics

Mitochondrial Dna

Top Venues

Science (New York, N.Y.)

Genome research

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Annie Maslan, Nicolas Altemose, Jeremy Marcus, Reet Mishra, Lucy D Brennan, Kousik Sundararajan, Gary Karpen, Aaron F Straight, Aaron Streets
Mapping protein-DNA interactions with DiMeLo-seq. Nature protocols (2024)
Xiaobao Cao, Tomas Buryska, Tianjin Yang, Jing Wang, Peter Fischer, Aaron Streets, Stavros Stavrakis, Andrew J deMello
Towards an active droplet-based microfluidic platform for programmable fluid handling. Lab on a chip (2023)
Zoë Steier, Dominik A Aylard, Laura L McIntyre, Isabel Baldwin, Esther Jeong Yoon Kim, Lydia K Lutes, Can Ergen, Tse-Shun Huang, Ellen A Robey, Nir Yosef, Aaron Streets
Single-cell multiomic analysis of thymocyte development reveals drivers of CD4 + T cell and CD8 + T cell lineage commitment. Nature immunology (2023)
Adam Gayoso, Philipp Weiler, Mohammad Lotfollahi, Dominik Klein, Justin Hong, Aaron Streets, Fabian Joachim Theis, Nir Yosef
Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells. Nature methods (2023)
Tao Chen, Chen Cao, Jianyun Zhang, Aaron Streets, Tiejun Li, Yanyi Huang
Histologically resolved multiomics enables precise molecular profiling of human intratumor heterogeneity. PLoS biology 20 (7) (2022)
Adam Gayoso, Romain Lopez, Galen Xing, Pierre Boyeau, Valeh Valiollah Pour Amiri, Justin Hong, Katherine Wu, Michael Jayasuriya, Edouard Mehlman, Maxime Langevin, Yining Liu, Jules Samaran, Gabriel Misrachi, Achille Nazaret, Oscar Clivio, Chenling A Xu, Tal Ashuach, Mariano Gabitto, Mohammad Lotfollahi, Valentine Svensson, Eduardo da Veiga Beltrame, Vitalii Kleshchevnikov, Carlos Talavera-López, Lior Pachter, Fabian Joachim Theis, Aaron Streets, Michael I Jordan, Jeffrey Regier, Nir Yosef
A Python library for probabilistic analysis of single-cell omics data. Nature biotechnology 40 (2) (2022)
Nicolas Altemose, Annie Maslan, Owen K Smith, Kousik Sundararajan, Rachel R Brown, Reet Mishra, Angela M Detweiler, Norma Neff, Karen H Miga, Aaron F Straight, Aaron Streets
DiMeLo-seq: a long-read, single-molecule method for mapping protein-DNA interactions genome wide. Nature methods 19 (6) (2022)
Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev I Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark E Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo Gomes de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik P Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, May Christine V Malicdan, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara A Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James W Torrance, Justin Wagner, Brian P Walenz, Aaron M Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M Phillippy
The complete sequence of a human genome. Science (New York, N.Y.) 376 (6588) (2022)
Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev I Uralsky, Fedor D Ryabov, Colin J Shew, Michael E G Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R Vollger, Arang Rhie, Ann M McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K Lucas, Sergey Aganezov, Daniel R Olson, Leonardo Gomes de Lima, Tamara A Potapova, Gabrielle A Hartley, Marina Haukness, Peter Kerpedjiev, Fedor E Gusev, Kristof Tigyi, Shelise Brooks, Alice C Young, Sergey Nurk, Sergey Koren, Sofie R Salama, Benedict Paten, Evgeny I Rogaev, Aaron Streets, Gary H Karpen, Abby F Dernburg, Beth A Sullivan, Aaron F Straight, Travis J Wheeler, Jennifer L Gerton, Evan E Eichler, Adam M Phillippy, Winston Timp, Megan Y Dennis, Rachel J O'Neill, Justin M Zook, Michael C Schatz, Pavel A Pevzner, Mark E Diekhans, Charles H Langley, Ivan A Alexandrov, Karen H Miga
Complete genomic and epigenetic maps of human centromeres. Science (New York, N.Y.) 376 (6588) (2022)
Anushka Gupta, Farnaz Shamsi, Nicolas Altemose, Gabriel F Dorlhiac, Aaron M Cypess, Andrew P White, Nir Yosef, Mary Elizabeth Patti, Yu-Hua Tseng, Aaron Streets
Characterization of transcript enrichment and detection bias in single-nucleus RNA-seq for mapping of distinct human adipocyte lineages. Genome research 32 (2) (2022)
Adam Gayoso, Zoë Steier, Romain Lopez, Jeffrey Regier, Kristopher L Nazor, Aaron Streets, Nir Yosef
Joint probabilistic modeling of single-cell multi-omic data with totalVI. Nature methods 18 (3) (2021)