Adam Gayoso

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 8

Top Topics

Respiratory Syndrome Coronavirus

Sentinel Lymph Node

Top Venues

Nature biotechnology

Research square

Molecular systems biology

This page only lists publications with an associated author ORCID identifier.

Publications

Malte Daniel Luecken, Scott A Gigante, Daniel Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael Vinyard, Daniel Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Botvinnik, Louise Deconinck, Kai Waldrant, Bastian Rieck, Constantin Ahlmann-Eltze, Eduardo da Veiga Beltrame, Andrew Benz, Carmen Bravo González-Blas, Ann Chen, Benjamin DeMeo, Can Ergen, Swann Floc'hlay, Adam Gayoso, Stephanie C Hicks, Yuge Ji, Vitalii Kleshchevnikov, Gioele La Manno, Maximilian Lombardo, Romain Lopez, Dario Righelli, Hirak Sarkar, Valentine Svensson, Alexander Tong, Galen Xing, Chenling Xu, Jonathan Bloom, Angela Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Adam Gayoso, Philipp Weiler, Mohammad Lotfollahi, Dominik Klein, Justin Hong, Aaron Streets, Fabian Joachim Theis, Nir Yosef
Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells. Nature methods (2023)
Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, null null, Bonnie Berger, Dana Pe'er, Aviv Regev, Sarah A Teichmann, Francesca Finotello, F Alexander Wolf, Nir Yosef, Oliver Stegle, Fabian Joachim Theis
The scverse project provides a computational ecosystem for single-cell omics data analysis. Nature biotechnology (2023)
Adam Gayoso, Romain Lopez, Galen Xing, Pierre Boyeau, Valeh Valiollah Pour Amiri, Justin Hong, Katherine Wu, Michael Jayasuriya, Edouard Mehlman, Maxime Langevin, Yining Liu, Jules Samaran, Gabriel Misrachi, Achille Nazaret, Oscar Clivio, Chenling A Xu, Tal Ashuach, Mariano Gabitto, Mohammad Lotfollahi, Valentine Svensson, Eduardo da Veiga Beltrame, Vitalii Kleshchevnikov, Carlos Talavera-López, Lior Pachter, Fabian Joachim Theis, Aaron Streets, Michael I Jordan, Jeffrey Regier, Nir Yosef
A Python library for probabilistic analysis of single-cell omics data. Nature biotechnology 40 (2) (2022)
Vitalii Kleshchevnikov, Artem Shmatko, Emma Dann, Alexander Aivazidis, Hamish W King, Tong Li, Rasa Elmentaite, Artem Lomakin, Veronika Kedlian, Adam Gayoso, Mika Sarkin Jain, Jun Sung Park, Lauma Ramona, Elizabeth Tuck, Anna Arutyunyan, Roser Vento-Tormo, Moritz Gerstung, Louisa Katherine James, Oliver Stegle, Omer Ali Bayraktar
Cell2location maps fine-grained cell types in spatial transcriptomics. Nature biotechnology 40 (5) (2022)
Mohammad Lotfollahi, Mohsen Naghipourfar, Malte Daniel Luecken, Matin Khajavi, Maren Büttner, Marco Wagenstetter, Žiga Avsec, Adam Gayoso, Nir Yosef, Marta Interlandi, Sergei Rybakov, Alexander V Misharin, Fabian Joachim Theis
Mapping single-cell data to reference atlases by transfer learning. Nature biotechnology (2021)
Romain Lopez, Adam Gayoso, Nir Yosef
Enhancing scientific discoveries in molecular biology with deep generative models. Molecular systems biology 16 (9) (2021)
Adam Gayoso, Zoë Steier, Romain Lopez, Jeffrey Regier, Kristopher L Nazor, Aaron Streets, Nir Yosef
Joint probabilistic modeling of single-cell multi-omic data with totalVI. Nature methods 18 (3) (2021)