Karen H Miga

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 11

Top Topics

High Throughput Sequencing

Fluorescent Probe

Pluripotent Stem Cells

Top Venues

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

medRxiv : the preprint server for health sciences

This page only lists publications with an associated author ORCID identifier.

Publications

Sergey Koren, Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M Jenike, Julian Lucas, Brandy McNulty, Jimin Park, Mikko Rautianinen, Arang Rhie, Dick Roelofs, Harrie Schneiders, Ilse Vrijenhoek, Koen Nijbroek, Doreen Ware, Michael C Schatz, Erik P Garrison, Sanwen Huang, William Richard McCombie, Karen H Miga, Alexander H J Wittenberg, Adam M Phillippy
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. bioRxiv : the preprint server for biology (2024)
Sergey Koren, Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M Jenike, Julian Lucas, Brandy McNulty, Jimin Park, Mikko Rautianinen, Arang Rhie, Dick Roelofs, Harrie Schneiders, Ilse Vrijenhoek, Koen Nijbroek, Doreen Ware, Michael C Schatz, Erik P Garrison, Sanwen Huang, William Richard McCombie, Karen H Miga, Alexander H J Wittenberg, Adam M Phillippy
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. bioRxiv : the preprint server for biology (2024)
Sergey Koren, Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M Jenike, Julian Lucas, Brandy McNulty, Jimin Park, Mikko Rautiainen, Arang Rhie, Dick Roelofs, Harrie Schneiders, Ilse Vrijenhoek, Koen Nijbroek, Doreen Ware, Michael C Schatz, Erik P Garrison, Sanwen Huang, W Richard McCombie, Karen H Miga, Alexander H J Wittenberg, Adam M Phillippy
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. bioRxiv : the preprint server for biology (2024)
Shloka Negi, Sarah L Stenton, Seth I Berger, Brandy McNulty, Ivo Violich, Joshua Gardner, Todd Hillaker, Sara M O'Rourke, Melanie C O'Leary, Elizabeth Carbonell, Christina A Austin-Tse, Gabrielle T Lemire, Jillian Serrano, Brian Mangilog, Grace E VanNoy, Mikhail Kolmogorov, Eric Vilain, Anne H O'Donnell-Luria, Emmanuèle C Délot, Karen H Miga, Jean Monlong, Benedict Paten
Advancing long-read nanopore genome assembly and accurate variant calling for rare disease detection. medRxiv : the preprint server for health sciences (2024)
Robin Aguilar, Conor K Camplisson, Qiaoyi Lin, Karen H Miga, William S Noble, Brian J Beliveau
Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes. bioRxiv : the preprint server for biology (2023)
Savannah J Hoyt, Jessica M Storer, Gabrielle A Hartley, Patrick G S Grady, Ariel Gershman, Leonardo Gomes de Lima, Charles Limouse, Reza Halabian, Luke Wojenski, Matias Rodriguez, Nicolas Altemose, Arang Rhie, Leighton J Core, Jennifer L Gerton, Wojciech Makalowski, Daniel R Olson, Jeb Rosen, Arian F A Smit, Aaron F Straight, Mitchell R Vollger, Travis J Wheeler, Michael C Schatz, Evan E Eichler, Adam M Phillippy, Winston Timp, Karen H Miga, Rachel J O'Neill
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements. Science (New York, N.Y.) 376 (6588) (2022)
Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev I Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark E Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo Gomes de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik P Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, May Christine V Malicdan, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara A Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James W Torrance, Justin Wagner, Brian P Walenz, Aaron M Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M Phillippy
The complete sequence of a human genome. Science (New York, N.Y.) 376 (6588) (2022)
Sergey Aganezov, Stephanie M Yan, Daniela C Soto, Melanie Kirsche, Samantha Zarate, Pavel Avdeyev, Dylan J Taylor, Kishwar Shafin, Alaina Shumate, Chunlin Xiao, Justin Wagner, Jennifer McDaniel, Nathan D Olson, Michael E G Sauria, Mitchell R Vollger, Arang Rhie, Melissa Meredith, Skylar Martin, Joyce Lee, Sergey Koren, Jeffrey A Rosenfeld, Benedict Paten, Ryan Layer, Chen-Shan Chin, Fritz J Sedlazeck, Nancy F Hansen, Danny E Miller, Adam M Phillippy, Karen H Miga, Rajiv C McCoy, Megan Y Dennis, Justin M Zook, Michael C Schatz
A complete reference genome improves analysis of human genetic variation. Science (New York, N.Y.) 376 (6588) (2022)
Ariel Gershman, Michael E G Sauria, Xavi Guitart, Mitchell R Vollger, Paul W Hook, Savannah J Hoyt, Miten Jain, Alaina Shumate, Roham Razaghi, Sergey Koren, Nicolas Altemose, Gina V Caldas, Glennis A Logsdon, Arang Rhie, Evan E Eichler, Michael C Schatz, Rachel J O'Neill, Adam M Phillippy, Karen H Miga, Winston Timp
Epigenetic patterns in a complete human genome. Science (New York, N.Y.) 376 (6588) (2022)
Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev I Uralsky, Fedor D Ryabov, Colin J Shew, Michael E G Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R Vollger, Arang Rhie, Ann M McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K Lucas, Sergey Aganezov, Daniel R Olson, Leonardo Gomes de Lima, Tamara A Potapova, Gabrielle A Hartley, Marina Haukness, Peter Kerpedjiev, Fedor E Gusev, Kristof Tigyi, Shelise Brooks, Alice C Young, Sergey Nurk, Sergey Koren, Sofie R Salama, Benedict Paten, Evgeny I Rogaev, Aaron Streets, Gary H Karpen, Abby F Dernburg, Beth A Sullivan, Aaron F Straight, Travis J Wheeler, Jennifer L Gerton, Evan E Eichler, Adam M Phillippy, Winston Timp, Megan Y Dennis, Rachel J O'Neill, Justin M Zook, Michael C Schatz, Pavel A Pevzner, Mark E Diekhans, Charles H Langley, Ivan A Alexandrov, Karen H Miga
Complete genomic and epigenetic maps of human centromeres. Science (New York, N.Y.) 376 (6588) (2022)
Mitchell R Vollger, Xavi Guitart, Philip C Dishuck, Ludovica Mercuri, William T Harvey, Ariel Gershman, Mark E Diekhans, Arvis Sulovari, Katherine M Munson, Alexandra P Lewis, Kendra Hoekzema, David Porubsky, Ruiyang Li, Sergey Nurk, Sergey Koren, Karen H Miga, Adam M Phillippy, Winston Timp, Mario Ventura, Evan E Eichler
Segmental duplications and their variation in a complete human genome. Science (New York, N.Y.) 376 (6588) (2022)