Haoyu Cheng

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 13

Top Topics

Single Molecule

Top Venues

Nature biotechnology

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren, Heng Li
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph. Nature methods 21 (6) (2024)
Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren, Heng Li
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph. Nature methods 21 (6) (2024)
Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren, Heng Li
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph. Nature methods (2024)
Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren, Heng Li
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph. Nature methods 21 (6) (2024)
Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren, Heng Li
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph. Nature methods 21 (6) (2024)
Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren, Heng Li
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph. Nature methods 21 (6) (2024)
Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren, Heng Li
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph. Nature methods (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alexander Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy. bioRxiv : the preprint server for biology (2023)
Haoyu Cheng, Erich D Jarvis, Olivier Fedrigo, Klaus-Peter Koepfli, Lara Urban, Neil J Gemmell, Heng Li
Haplotype-resolved assembly of diploid genomes without parental data. Nature biotechnology 40 (9) (2022)
Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev I Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark E Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo Gomes de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik P Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, May Christine V Malicdan, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara A Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James W Torrance, Justin Wagner, Brian P Walenz, Aaron M Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M Phillippy
The complete sequence of a human genome. Science (New York, N.Y.) 376 (6588) (2022)
Justin Wagner, Nathan D Olson, Lindsay Harris, Jennifer McDaniel, Haoyu Cheng, Arkarachai Fungtammasan, Yih-Chii Hwang, Richa Gupta, Aaron M Wenger, William J Rowell, Ziad M Khan, Jesse Farek, Yiming Zhu, Aishwarya Pisupati, Medhat Mahmoud, Chunlin Xiao, Byunggil Yoo, Sayed Mohammad Ebrahim Sahraeian, Danny E Miller, David Jáspez, Jose Miguel Lorenzo-Salazar, Adrián Muñoz-Barrera, Luis Alberto Rubio-Rodríguez, Carlos Flores, Giuseppe Narzisi, Uday Shanker Evani, Wayne E Clarke, Joyce Lee, Christopher E Mason, Stephen E Lincoln, Karen H Miga, Mark T W Ebbert, Alaina Shumate, Heng Li, Chen-Shan Chin, Justin M Zook, Fritz J Sedlazeck
Curated variation benchmarks for challenging medically relevant autosomal genes. Nature biotechnology 40 (5) (2022)
Haowen Zhang, Haoran Li, Chirag Jain, Haoyu Cheng, Kin Fai Au, Heng Li, Srinivas Aluru
Real-time mapping of nanopore raw signals. Bioinformatics (Oxford, England) 37 (Suppl_1) (2021)
Haoyu Cheng, Gregory T Concepcion, Xiaowen Feng, Haowen Zhang, Heng Li
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm. Nature methods 18 (2) (2021)