Tanja Stadler (T Stadler)

ResearcherID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Topics

Immune Response

Genetic Diversity

Mycobacterium Tuberculosis

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Timothy G Vaughan, Jérémie Scire, Sarah A Nadeau, Tanja Stadler
Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data. Proceedings of the National Academy of Sciences of the United States of America 121 (2) (2024)
Tatjana Chan, Julia Ginders, Evelyn Kuhlmeier, Marina Luisa Meli, Eva Bönzli, Theres Meili, Julia Hüttl, Jean-Michel Hatt, Karin Hindenlang Clerc, Anja Kipar, Fabia Wyss, Christian Wenker, Marie-Pierre Ryser-Degiorgis, Cecilia Valenzuela Agüí, Christian Urban, Christian Beisel, Tanja Stadler, Regina Hofmann-Lehmann
Detection of SARS-CoV-2 RNA in a Zoo-Kept Red Fox ( Vulpes vulpes ). Viruses 16 (4) (2024)
Tatjana Chan, Julia Ginders, Evelyn Kuhlmeier, Marina Luisa Meli, Eva Bönzli, Theres Meili, Julia Hüttl, Jean-Michel Hatt, Karin Hindenlang Clerc, Anja Kipar, Fabia Wyss, Christian Wenker, Marie-Pierre Ryser-Degiorgis, Cecilia Valenzuela Agüí, Christian Urban, Christian Beisel, Tanja Stadler, Regina Hofmann-Lehmann
Detection of SARS-CoV-2 RNA in a Zoo-Kept Red Fox ( Vulpes vulpes ). Viruses 16 (4) (2024)
Etthel M Windels, Eddie M Wampande, Moses L Joloba, W Henry Boom, Galo A Goig, Helen Cox, Jerry Hella, Sonia Borrell, Sebastien Gagneux, Daniela Brites, Tanja Stadler
HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa. PLoS pathogens 20 (5) (2024)
Etthel M Windels, Eddie M Wampande, Moses L Joloba, W Henry Boom, Galo A Goig, Helen Cox, Jerry Hella, Sonia Borrell, Sebastien Gagneux, Daniela Brites, Tanja Stadler
HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa. PLoS pathogens 20 (5) (2024)
Timothy G Vaughan, Jérémie Scire, Sarah A Nadeau, Tanja Stadler
Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data. Proceedings of the National Academy of Sciences of the United States of America 121 (2) (2024)
Timothy G Vaughan, Jérémie Scire, Sarah A Nadeau, Tanja Stadler
Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data. Proceedings of the National Academy of Sciences of the United States of America 121 (2) (2024)
Etthel M Windels, Eddie M Wampande, Moses L Joloba, W Henry Boom, Galo A Goig, Helen Cox, Jerry Hella, Sonia Borrell, Sebastien Gagneux, Daniela Brites, Tanja Stadler
HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa. PLoS pathogens 20 (5) (2024)
Timothy G Vaughan, Jérémie Scire, Sarah A Nadeau, Tanja Stadler
Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data. Proceedings of the National Academy of Sciences of the United States of America 121 (2) (2024)
Tatjana Chan, Julia Ginders, Evelyn Kuhlmeier, Marina Luisa Meli, Eva Bönzli, Theres Meili, Julia Hüttl, Jean-Michel Hatt, Karin Hindenlang Clerc, Anja Kipar, Fabia Wyss, Christian Wenker, Marie-Pierre Ryser-Degiorgis, Cecilia Valenzuela Agüí, Christian Urban, Christian Beisel, Tanja Stadler, Regina Hofmann-Lehmann
Detection of SARS-CoV-2 RNA in a Zoo-Kept Red Fox ( Vulpes vulpes ). Viruses 16 (4) (2024)
Etthel M Windels, Eddie M Wampande, Moses L Joloba, W Henry Boom, Galo A Goig, Helen Cox, Jerry Hella, Sonia Borrell, Sebastien Gagneux, Daniela Brites, Tanja Stadler
HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa. PLoS pathogens 20 (5) (2024)
Chaoran Chen, Alexander Taepper, Fabian Engelniederhammer, Jonas Kellerer, Cornelius Römer, Tanja Stadler
LAPIS is a fast web API for massive open virus sequencing data. BMC bioinformatics 24 (1) (2023)
Sophie Seidel, Tanja Stadler
Correction to: 'TiDeTree: a Bayesian phylogenetic framework to estimate single-cell trees and population dynamic parameters from genetic lineage tracing data' (2022) by Seidel & Stadler. Proceedings. Biological sciences 290 (1990) (2023)
Evelyn Kuhlmeier, Tatjana Chan, Cecilia Valenzuela Agüí, Barbara Willi, Aline Wolfensberger, Christian Beisel, Ivan Topolsky, Niko Beerenwinkel, Tanja Stadler, null Swiss Sars-CoV-Sequencing Consortium, Sarah Jones, Grace B Tyson, Margaret J Hosie, Katja Reitt, Julia Hüttl, Marina Luisa Meli, Regina Hofmann-Lehmann
Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland. Viruses 15 (1) (2023)
Evelyn Kuhlmeier, Tatjana Chan, Cecilia Valenzuela Agüí, Barbara Willi, Aline Wolfensberger, Christian Beisel, Ivan Topolsky, Niko Beerenwinkel, Tanja Stadler, null Swiss Sars-CoV-Sequencing Consortium, Sarah Jones, Grace B Tyson, Margaret J Hosie, Katja Reitt, Julia Hüttl, Marina Luisa Meli, Regina Hofmann-Lehmann
Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland. Viruses 15 (1) (2023)
Claire Guinat, Hao Tang, Qiqi Yang, Cecilia Valenzuela Agüí, Timothy G Vaughan, Jérémie Scire, Hongjie Yu, Wei Wang, Zhiyuan Chen, Mariette F Ducatez, Tanja Stadler
Bayesian phylodynamics reveals the transmission dynamics of avian influenza A(H7N9) virus at the human-live bird market interface in China. Proceedings of the National Academy of Sciences of the United States of America 120 (17) (2023)
Evelyn Kuhlmeier, Tatjana Chan, Cecilia Valenzuela Agüí, Barbara Willi, Aline Wolfensberger, Christian Beisel, Ivan Topolsky, Niko Beerenwinkel, Tanja Stadler, null Swiss Sars-CoV-Sequencing Consortium, Sarah Jones, Grace B Tyson, Margaret J Hosie, Katja Reitt, Julia Hüttl, Marina Luisa Meli, Regina Hofmann-Lehmann
Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland. Viruses 15 (1) (2023)
Lisandra Aguilar-Bultet, Ana Belén García-Martín, Isabelle Vock, Laura Maurer Pekerman, Rahel Stadler, Ruth Schindler, Manuel Battegay, Tanja Stadler, Elena Gómez-Sanz, Sarah Tschudin-Sutter
Within-host genetic diversity of extended-spectrum beta-lactamase-producing Enterobacterales in long-term colonized patients. Nature communications 14 (1) (2023)
Evelyn Kuhlmeier, Tatjana Chan, Cecilia Valenzuela Agüí, Barbara Willi, Aline Wolfensberger, Christian Beisel, Ivan Topolsky, Niko Beerenwinkel, Tanja Stadler, null Swiss Sars-CoV-Sequencing Consortium, Sarah Jones, Grace B Tyson, Margaret J Hosie, Katja Reitt, Julia Hüttl, Marina Luisa Meli, Regina Hofmann-Lehmann
Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland. Viruses 15 (1) (2023)
Lisandra Aguilar-Bultet, Ana Belén García-Martín, Isabelle Vock, Laura Maurer Pekerman, Rahel Stadler, Ruth Schindler, Manuel Battegay, Tanja Stadler, Elena Gómez-Sanz, Sarah Tschudin-Sutter
Within-host genetic diversity of extended-spectrum beta-lactamase-producing Enterobacterales in long-term colonized patients. Nature communications 14 (1) (2023)
Sophie Seidel, Tanja Stadler
Correction to: 'TiDeTree: a Bayesian phylogenetic framework to estimate single-cell trees and population dynamic parameters from genetic lineage tracing data' (2022) by Seidel & Stadler. Proceedings. Biological sciences 290 (1990) (2023)
Lisandra Aguilar-Bultet, Ana Belén García-Martín, Isabelle Vock, Laura Maurer Pekerman, Rahel Stadler, Ruth Schindler, Manuel Battegay, Tanja Stadler, Elena Gómez-Sanz, Sarah Tschudin-Sutter
Within-host genetic diversity of extended-spectrum beta-lactamase-producing Enterobacterales in long-term colonized patients. Nature communications 14 (1) (2023)
Evelyn Kuhlmeier, Tatjana Chan, Cecilia Valenzuela Agüí, Barbara Willi, Aline Wolfensberger, Christian Beisel, Ivan Topolsky, Niko Beerenwinkel, Tanja Stadler, null Swiss Sars-CoV-Sequencing Consortium, Sarah Jones, Grace B Tyson, Margaret J Hosie, Katja Reitt, Julia Hüttl, Marina Luisa Meli, Regina Hofmann-Lehmann
Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland. Viruses 15 (1) (2023)
Chloé Loiseau, Etthel M Windels, Sebastian M Gygli, Levan Jugheli, Nino Maghradze, Daniela Brites, Amanda Ross, Galo Goig, Miriam Reinhard, Sonia Borrell, Andrej Trauner, Anna Dötsch, Rusudan Aspindzelashvili, Rebecca Denes, Klaus Reither, Christian Beisel, Nestani Tukvadze, Zaza Avaliani, Tanja Stadler, Sébastien Gagneux
The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot. Nature communications 14 (1) (2023)
Lisandra Aguilar-Bultet, Ana Belén García-Martín, Isabelle Vock, Laura Maurer Pekerman, Rahel Stadler, Ruth Schindler, Manuel Battegay, Tanja Stadler, Elena Gómez-Sanz, Sarah Tschudin-Sutter
Within-host genetic diversity of extended-spectrum beta-lactamase-producing Enterobacterales in long-term colonized patients. Nature communications 14 (1) (2023)
Evelyn Kuhlmeier, Tatjana Chan, Cecilia Valenzuela Agüí, Barbara Willi, Aline Wolfensberger, Christian Beisel, Ivan Topolsky, Niko Beerenwinkel, Tanja Stadler, null Swiss Sars-CoV-Sequencing Consortium, Sarah Jones, Grace B Tyson, Margaret J Hosie, Katja Reitt, Julia Hüttl, Marina Luisa Meli, Regina Hofmann-Lehmann
Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland. Viruses 15 (1) (2023)
Jana Sanne Huisman, Jérémie Scire, Daniel C Angst, Jinzhou Li, Richard A Neher, Marloes H Maathuis, Sebastian Bonhoeffer, Tanja Stadler
Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2. eLife 11 (2022)
Sarah A Nadeau, Timothy G Vaughan, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Emma B Hodcroft, Tobias Schär, Ina Nissen, Natascha Santacroce, Elodie Burcklen, Pedro F Ferreira, Kim Philipp Jablonski, Susana Posada Céspedes, Vincenzo Capece, Sophie Seidel, Noemi Santamaria de Souza, Julia Martínez Gómez, Phil Fang Cheng, Philipp Peter Bosshard, Mitchell Paul Levesque, Verena Kufner, Stefan Schmutz, Maryam Zaheri, Michael Huber, Alexandra Trkola, Samuel Cordey, Florian Laubscher, Ana Rita Gonçalves, Sébastien Aeby, Trestan Pillonel, Damien Jacot, Claire Bertelli, Gilbert Greub, Karoline Leuzinger, Madlen Stange, Alfredo Mari, Tim Roloff, Helena Seth-Smith, Hans H Hirsch, Adrian Egli, Maurice Redondo, Olivier Kobel, Christoph Noppen, Louis du Plessis, Niko Beerenwinkel, Richard A Neher, Christian Beisel, Tanja Stadler
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data. Science translational medicine (2022)
Claire Guinat, Cecilia Valenzuela Agüí, Timothy G Vaughan, Jérémie Scire, Katja V Goller, Christoph Staubach, Jacqueline King, Edyta Świętoń, Ádám Dán, Lenka Černíková, Mariette F Ducatez, Tanja Stadler
Disentangling the role of poultry farms and wild birds in the spread of highly pathogenic avian influenza virus in Europe. Virus evolution 8 (2) (2022)
Claire Guinat, Cecilia Valenzuela Agüí, Timothy G Vaughan, Jérémie Scire, Katja V Goller, Christoph Staubach, Jacqueline King, Edyta Świętoń, Ádám Dán, Lenka Černíková, Mariette F Ducatez, Tanja Stadler
Disentangling the role of poultry farms and wild birds in the spread of highly pathogenic avian influenza virus in Europe. Virus evolution 8 (2) (2022)
Sarah A Nadeau, Christian W Thorball, Roger Kouyos, Huldrych F Günthard, Jürg Böni, Sabine Yerly, Matthieu Perreau, Thomas Klimkait, Andri Rauch, Hans H Hirsch, Matthias Cavassini, Pietro Vernazza, Enos Bernasconi, Jacques Fellay, Venelin Mitov, Tanja Stadler, null null
A Phylogeny-aware GWAS Framework to Correct for Heritable Pathogen Effects on Infectious Disease Traits. Molecular biology and evolution 39 (8) (2022)
Katharina Jahn, David Dreifuss, Ivan Topolsky, Anina Kull, Pravin Ganesanandamoorthy, Xavier Fernandez-Cassi, Carola Bänziger, Alexander J Devaux, Elyse Stachler, Lea Caduff, Federica Cariti, Alex Tuñas Corzón, Lara Fuhrmann, Chaoran Chen, Kim Philipp Jablonski, Sarah Nadeau, Mirjam Feldkamp, Christian Beisel, Catharine Aquino, Tanja Stadler, Christoph Ort, Tamar Kohn, Timothy R Julian, Niko Beerenwinkel
Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC. Nature microbiology 7 (8) (2022)
Jérémie Scire, Joëlle Barido-Sottani, Denise Kühnert, Timothy G Vaughan, Tanja Stadler
Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured Populations. Viruses 14 (8) (2022)
Jelissa Katharina Peter, Fanny Wegner, Severin Gsponer, Fabrice Helfenstein, Tim Roloff, Rahel Tarnutzer, Kerstin Grosheintz, Moritz Back, Carla Schaubhut, Sabina Wagner, Helena M B Seth-Smith, Patrick Scotton, Maurice Redondo, Christiane Beckmann, Tanja Stadler, Andrea Salzmann, Henriette Kurth, Karoline Leuzinger, Stefano Bassetti, Roland Bingisser, Martin Siegemund, Maja Weisser, Manuel Battegay, Sarah Tschudin Sutter, Aitana Lebrand, Hans H Hirsch, Simon Fuchs, Adrian Egli
SARS-CoV-2 Vaccine Alpha and Delta Variant Breakthrough Infections Are Rare and Mild but Can Happen Relatively Early after Vaccination. Microorganisms 10 (5) (2022)
Jana Sanne Huisman, Timothy G Vaughan, Adrian Egli, Sarah Tschudin-Sutter, Tanja Stadler, Sebastian Bonhoeffer
The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogenies. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1861) (2022)
Sophie Seidel, Tanja Stadler
TiDeTree: a Bayesian phylogenetic framework to estimate single-cell trees and population dynamic parameters from genetic lineage tracing data. Proceedings. Biological sciences 289 (1986) (2022)
Emma B Hodcroft, Moira Zuber, Sarah A Nadeau, Timothy G Vaughan, Katharine H D Crawford, Christian L Althaus, Martina L Reichmuth, John E Bowen, Alexandra C Walls, Davide Corti, Jesse D Bloom, David J Veesler, David Mateo, Alberto Hernando, Iñaki Comas, Fernando Gonzáles-Candelas, null null, Tanja Stadler, Richard A Neher
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020. Nature 595 (7869) (2021)
Tanja Stadler, Oliver George Pybus, Michael P H Stumpf
Phylodynamics for cell biologists. Science (New York, N.Y.) 371 (6526) (2021)
Sarah A Nadeau, Timothy G Vaughan, Jérémie Scire, Jana Sanne Huisman, Tanja Stadler
The origin and early spread of SARS-CoV-2 in Europe. Proceedings of the National Academy of Sciences of the United States of America 118 (9) (2021)
Austin H Patton, Matthew F Lawrance, Mark J Margres, Christopher P Kozakiewicz, Rodrigo K Hamede, Manuel Ruiz-Aravena, David G Hamilton, Sebastien Comte, Lauren E Ricci, Robyn L Taylor, Tanja Stadler, Adam D Leaché, Hamish I McCallum, Menna E Jones, Paul A Hohenlohe, Andrew Storfer
A transmissible cancer shifts from emergence to endemism in Tasmanian devils. Science (New York, N.Y.) 370 (6522) (2020)
Katelyn M Gostic, Lauren McGough, Edward B Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A Hay, Pablo De Salazar, Joel Hellewell, Sophie Meakin, James D Munday, Nikos I Bosse, Katharine Sherrat, Robin N Thompson, Laura F White, Jana Sanne Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah E Cobey
Practical considerations for measuring the effective reproductive number, Rt. PLoS computational biology 16 (12) (2020)
Joëlle Barido-Sottani, Timothy G Vaughan, Tanja Stadler
Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth-death model. Journal of the Royal Society, Interface 15 (146) (2019)
Tanja Stadler
Species-specific diversification. Nature ecology & evolution 3 (7) (2019)
Remco R Bouckaert, Timothy G Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola de Maio, Michael Matschiner, Fábio K Mendes, Nicola F Müller, Huw A Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David Rasmussen, Igor Siveroni, Marc A Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J Drummond
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS computational biology 15 (4) (2019)
Jako B Zinsstag, Monique Lechenne, Mirjam Laager, Rolande Mindekem, Service Naïssengar, Assandi Oussiguéré, Kebkiba Bidjeh, Germain Rives, Julie Tessier, Seraphin Madjaninan, Mahamat Ouagal, Daugla D Moto, Idriss O Alfaroukh, Yvonne Muthiani, Abdallah Traoré, Jan Hattendorf, Anthony Lepelletier, Lauriane Kergoat, Hervé Bourhy, Laurent Dacheux, Tanja Stadler, Nakul Chitnis
Vaccination of dogs in an African city interrupts rabies transmission and reduces human exposure. Science translational medicine 9 (421) (2018)
Tanja Stadler, Jana Smrckova
Estimating shifts in diversification rates based on higher-level phylogenies. Biology letters 12 (10) (2017)