Alan E Yocca (Alan Yocca)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 13

Top Topics

Transcription Factor

Genome Wide Identification

Top Venues

Nature communications

G3 (Bethesda, Md.)

Molecular biology and evolution

The plant genome

This page only lists publications with an associated author ORCID identifier.

Publications

Huiting Zhang, Itsuhiro Ko, Abigail Eaker, Sabrina Haney, Ninh Khuu, Kara M Ryan, Aaron B Appleby, Brendan Hoffmann, Henry Landis, Kenneth A Pierro, Noah Willsea, Heidi Hargarten, Alan E Yocca, Alex E Harkess, Loren Honaas, Stephen P Ficklin
A Haplotype-resolved, Chromosome-scale Genome for Malus domestica Borkh. 'WA 38'. G3 (Bethesda, Md.) (2024)
Abigail E Bryson, Emily R Lanier, Kin H Lau, John P Hamilton, Brieanne Vaillancourt, Davis Mathieu, Alan E Yocca, Garret P Miller, Patrick P Edger, C Robin Buell, Björn R Hamberger
Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory. Nature communications 14 (1) (2023)
Abigail E Bryson, Emily R Lanier, Kin H Lau, John P Hamilton, Brieanne Vaillancourt, Davis Mathieu, Alan E Yocca, Garret P Miller, Patrick P Edger, C Robin Buell, Björn R Hamberger
Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory. Nature communications 14 (1) (2023)
Alan E Yocca, Adrian Platts, Elizabeth Alger, Scott Teresi, Molla F Mengist, Juliana Benevenuto, Luis Felipe V Ferrão, MacKenzie Jacobs, Michal Babinski, Maria Magallanes-Lundback, Philipp Bayer, Agnieszka Golicz, Jodi L Humann, Dorrie Main, Richard V Espley, David Chagné, Nick W Albert, Sara Montanari, Nicholi Vorsa, James Polashock, Luis Díaz-Garcia, Juan Zalapa, Nahla V Bassil, Patricio R Munoz, Massimo Iorizzo, Patrick P Edger
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts. Horticulture research 10 (11) (2023)
Makenzie E Mabry, R Shawn Abrahams, Ihsan A Al-Shehbaz, William J Baker, Simon Barak, Michael S Barker, Russell L Barrett, Aleksandra Beric, Samik Bhattacharya, Sarah B Carey, Gavin C Conant, John G Conran, Maheshi Dassanayake, Patrick P Edger, Jocelyn C Hall, Yue Hao, Kasper P Hendriks, Julian M Hibberd, Graham John King, Daniel J Kliebenstein, Marcus A Koch, Ilia J Leitch, Frederic Lens, Martin A Lysak, Alex C McAlvay, Michael T W McKibben, Francesco Mercati, Richard C Moore, Klaus Mummenhoff, Daniel J Murphy, Lachezar A Nikolov, Michael T Pisias, Eric H Roalson, Michael Eric Schranz, Shawn K Thomas, Qingyi Yu, Alan E Yocca, Joseph Chris Pires, Alex E Harkess
Complementing model species with model clades. The Plant cell (2023)
Abigail E Bryson, Emily R Lanier, Kin H Lau, John P Hamilton, Brieanne Vaillancourt, Davis Mathieu, Alan E Yocca, Garret P Miller, Patrick P Edger, C Robin Buell, Björn R Hamberger
Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory. Nature communications 14 (1) (2023)
Alan E Yocca, Adrian E Platts, Elizabeth Alger, Scott J Teresi, Molla F Mengist, Juliana Benevenuto, Luis Felipe Ventorim Ferrão, MacKenzie Jacobs, Michal Babinski, Maria Magallanes-Lundback, Philipp Emanuel Bayer, Agnieszka A Golicz, Jodi L Humann, Dorrie Main, Richard V Espley, David Chagne, Nick W Albert, Sara Montanari, Nicholi Vorsa, James Polashock, Luis Diaz-Garcia, Juan Zalapa, Nahla V Bassil, Patricio R Muñoz, Massimo Iorizzo, Patrick P Edger
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts. bioRxiv : the preprint server for biology (2023)
Nick W Albert, Massimo Iorizzo, Molla F Mengist, Sara Montanari, Juan Zalapa, Andrew F Maule, Patrick P Edger, Alan E Yocca, Adrian E Platts, Boas Pucker, Richard V Espley
Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit. Plant physiology (2023)
Alan E Yocca, Patrick P Edger
Machine learning approaches to identify core and dispensable genes in pangenomes. The plant genome (2021)
Alan E Yocca, Zefu Lu, Robert J Schmitz, Michael Freeling, Patrick P Edger
Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana. Molecular biology and evolution 38 (7) (2021)
Robert VanBuren, Ching Man Jennifer Wai, Xuewen Wang, Jeremy Pardo, Alan E Yocca, Hao Wang, Srinivasa R Chaluvadi, Guomin Han, Douglas Bryant, Patrick P Edger, Joachim Messing, Mark E Sorrells, Todd C Mockler, Jeffrey L Bennetzen, Todd P Michael
Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nature communications 11 (1) (2020)
Patrick P Edger, Michael R McKain, Alan E Yocca, Steven J Knapp, Qin Qiao, Ticao Zhang
Reply to: Revisiting the origin of octoploid strawberry. Nature genetics 52 (1) (2019)
Christopher R Barbey, Seonghee Lee, Sujeet Verma, Kevin Andrew Bird, Alan E Yocca, Patrick P Edger, Steven J Knapp, Vance M Whitaker, Kevin M Folta
Disease Resistance Genetics and Genomics in Octoploid Strawberry. G3 (Bethesda, Md.) 9 (10) (2019)