Joseph Chris Pires (J Chris Pires, J Chris Pires)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 23

Top Venues

American journal of botany

The Plant cell

Scientific reports

Nature communications

University of Missouri Columbia

University of Wisconsin Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Missouri Columbia

United States

Professor :: Biological Sciences

University of Missouri Columbia

United States

Associate Professor :: Biological Sciences

University of Missouri Columbia

United States

Assistant Professor :: Biological Sciences

University of Wisconsin Madison

United States

Postdoctoral Fellow :: Agronomy

Royal Botanic Gardens Kew

United Kingdom

NSF NATO Postdoctoral Fellow :: Jodrell Laboratory

Education History

University of Wisconsin Madison

United States

PHD :: Botany

Publications

Shawn K Thomas, Kathryn Vanden Hoek, Tasha Ogoti, Ha Ngoc Duong, Ruthie Angelovici, Joseph Chris Pires, David G Mendoza-Cozatl, Jacob D Washburn, Craig A Schenck
Halophytes and heavy metals: A multi-omics approach to understand the role of gene and genome duplication in the abiotic stress tolerance of Cakile maritima. American journal of botany 111 (8) (2024)
Shawn K Thomas, Kathryn Vanden Hoek, Tasha Ogoti, Ha Ngoc Duong, Ruthie Angelovici, Joseph Chris Pires, David G Mendoza-Cozatl, Jacob D Washburn, Craig A Schenck
Halophytes and heavy metals: A multi-omics approach to understand the role of gene and genome duplication in the abiotic stress tolerance of Cakile maritima. American journal of botany (2024)
Makenzie E Mabry, R Shawn Abrahams, Ihsan A Al-Shehbaz, William J Baker, Simon Barak, Michael S Barker, Russell L Barrett, Aleksandra Beric, Samik Bhattacharya, Sarah B Carey, Gavin C Conant, John G Conran, Maheshi Dassanayake, Patrick P Edger, Jocelyn C Hall, Yue Hao, Kasper P Hendriks, Julian M Hibberd, Graham John King, Daniel J Kliebenstein, Marcus A Koch, Ilia J Leitch, Frederic Lens, Martin A Lysak, Alex C McAlvay, Michael T W McKibben, Francesco Mercati, Richard C Moore, Klaus Mummenhoff, Daniel J Murphy, Lachezar A Nikolov, Michael T Pisias, Eric H Roalson, Michael Eric Schranz, Shawn K Thomas, Qingyi Yu, Alan E Yocca, Joseph Chris Pires, Alex E Harkess
Complementing model species with model clades. The Plant cell (2023)
Jihong Hu, Biyun Chen, Jing Zhao, Fugui Zhang, Ting Xie, Kun Xu, Guizhen Gao, Guixin Yan, Hongge Li, Lixia Li, Gaoxiang Ji, Hong An, Hao Li, Qian Huang, Meili Zhang, Jinfeng Wu, Weilin Song, Xiaojun Zhang, Yujie Luo, Joseph Chris Pires, Jacqueline Batley, Shilin Tian, Xiaoming Wu
Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding. Nature genetics 54 (5) (2022)
Won Cheol Yim, Mia L Swain, Dongna Ma, Hong An, Kevin Andrew Bird, David D Curdie, Samuel Wang, Hyun Don Ham, Agusto R Luzuriaga-Neira, Jay S Kirkwood, Manhoi Hur, Juan K Q Solomon, Jeffrey F Harper, Dylan K Kosma, David Alvarez-Ponce, John C Cushman, Patrick P Edger, Annaliese S Mason, Joseph Chris Pires, Haibao Tang, Xing-Tan Zhang
The final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome. The Plant cell 34 (11) (2022)
Yue Hao, Jonathon Fleming, Joanna Petterson, Eric Lyons, Patrick P Edger, Joseph Chris Pires, Jeffrey L Thorne, Gavin C Conant
Convergent evolution of polyploid genomes from across the eukaryotic tree of life. G3 (Bethesda, Md.) 12 (6) (2022)
Michael T Pisias, Harmeet Singh Bakala, Alex C McAlvay, Makenzie E Mabry, James A Birchler, Bing Yang, Joseph Chris Pires
Prospects of Feral Crop De Novo Redomestication. Plant & cell physiology 63 (11) (2022)
Yue Hao, Makenzie E Mabry, Patrick P Edger, Michael Freeling, Chunfang Zheng, Lingling Jin, Robert VanBuren, Marivi Colle, Hong An, R Shawn Abrahams, Jacob D Washburn, Xinshuai Qi, Kerrie W Barry, Christopher Daum, Shengqiang Shu, Jeremy Schmutz, David Sankoff, Michael S Barker, Eric Lyons, Joseph Chris Pires, Gavin C Conant
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome research 31 (5) (2021)
Philipp Emanuel Bayer, Armin Scheben, Agnieszka A Golicz, Yuxuan Yuan, Sébastien Faure, HueyTyng Lee, Harmeet Singh Chawla, Robyn Anderson, Ian Bancroft, Harsh Raman, Yong Pyo Lim, Steven Robbens, Lixi Jiang, Shengyi Liu, Michael S Barker, Michael Eric Schranz, Xiaowu Wang, Graham John King, Joseph Chris Pires, Boulos Chalhoub, Rod J Snowdon, Jacqueline Batley, David Edwards
Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids. Plant biotechnology journal 19 (12) (2021)
Jacob D Washburn, Josh Strable, Patrick J Dickinson, Satya S Kothapalli, Julia M Brose, Sarah Covshoff, Gavin C Conant, Julian M Hibberd, Joseph Chris Pires
Distinct C 4 sub-types and C 3 bundle sheath isolation in the Paniceae grasses. Plant direct 5 (12) (2021)
Kevin Andrew Bird, Chad E Niederhuth, Shujun Ou, Malia A Gehan, Joseph Chris Pires, Zhiyong Xiong, Robert VanBuren, Patrick P Edger
Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus. The New phytologist 230 (1) (2021)
Xinshuai Qi, Hong An, Tara E Hall, Chenlu Di, Paul D Blischak, Michael T W McKibben, Yue Hao, Gavin C Conant, Joseph Chris Pires, Michael S Barker
Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. The New phytologist 230 (1) (2021)
Lei Kang, Lunwen Qian, Ming Zheng, Liyang Chen, Hao Chen, Liu Yang, Liang You, Bin Yang, Mingli Yan, Yuanguo Gu, Tianyi Wang, Sarah-Veronica Schiessl, Hong An, Paul Blischak, Xianjun Liu, Hongfeng Lu, Dawei Zhang, Yong Rao, Donghai Jia, Dinggang Zhou, Huagui Xiao, Yonggang Wang, Xinghua Xiong, Annaliese S Mason, Joseph Chris Pires, Rod J Snowdon, Wei Hua, Zhongsong Liu
Genomic insights into the origin, domestication and diversification of Brassica juncea. Nature genetics 53 (9) (2021)
Stacey D Smith, Ruthie Angelovici, Karolina Heyduk, Hiroshi A Maeda, Gaurav D Moghe, Joseph Chris Pires, Joshua R Widhalm, Jennifer H Wisecaver
The renaissance of comparative biochemistry. American journal of botany 106 (1) (2019)
Brandin Grindstaff, Makenzie E Mabry, Paul D Blischak, Micheal Quinn, Joseph Chris Pires
Affordable remote monitoring of plant growth in facilities using Raspberry Pi computers. Applications in plant sciences 7 (8) (2019)
Hong An, Xinshuai Qi, Michelle L Gaynor, Yue Hao, Sarah C Gebken, Makenzie E Mabry, Alex C McAlvay, Graham R Teakle, Gavin C Conant, Michael S Barker, Tingdong Fu, Bin Yi, Joseph Chris Pires
Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. Nature communications 10 (1) (2019)
Erkan Y Osman, Madeline R Bolding, Eric Villalón, Kevin A Kaifer, Zachary C Lorson, Sarah Tisdale, Yue Hao, Gavin C Conant, Joseph Chris Pires, Livio Pellizzoni, Christian L Lorson
Functional characterization of SMN evolution in mouse models of SMA. Scientific reports 9 (1) (2019)
Sarah A Unruh, Michael R McKain, Yung-I Lee, Tomohisa Yukawa, Melissa K McCormick, Richard P Shefferson, Ann Smithson, James H Leebens-Mack, Joseph Chris Pires
Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae). American journal of botany 105 (4) (2018)
Jacob D Washburn, James C Schnable, Gavin C Conant, Thomas P Brutnell, Ying Shao, Yang Zhang, Martha Ludwig, Gerrit Davidse, Joseph Chris Pires
Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses. Scientific reports 8 (1) (2018)
Jacob D Washburn, James C Schnable, Gavin C Conant, Thomas P Brutnell, Ying Shao, Yang Zhang, Martha Ludwig, Gerrit Davidse, Joseph Chris Pires
Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. Scientific reports 7 (1) (2017)
Kim L Johnson, Andrew M Cassin, Andrew Lonsdale, Gane Ka-Shu Wong, Douglas E Soltis, Nicholas W Miles, Michael Melkonian, Barbara Melkonian, Michael K Deyholos, James H Leebens-Mack, Carl J Rothfels, Dennis William Stevenson, Sean W Graham, Xumin Wang, Shuangxiu Wu, Joseph Chris Pires, Patrick P Edger, Eric J Carpenter, Anthony Bacic, Monika S Doblin, Carolyn J Schultz
Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes. Plant physiology 174 (2) (2017)
Patrick P Edger, Ronald D Smith, Michael R McKain, Arielle M Cooley, Mario Vallejo-Marin, Yao-Wu Yuan, Adam J Bewick, Lexiang Ji, Adrian E Platts, Megan J Bowman, Kevin L Childs, Jacob D Washburn, Robert J Schmitz, Gregory D Smith, Joseph Chris Pires, Joshua R Puzey
Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower. The Plant cell 29 (9) (2017)
Alex Harkess, Jinsong Zhou, Chunyan Xu, John E Bowers, Ron Van der Hulst, Saravanaraj Ayyampalayam, Francesco Mercati, Paolo Riccardi, Michael R McKain, Atul Kakrana, Haibao Tang, Jeremy Ray, John Groenendijk, Siwaret Arikit, Sandra M Mathioni, Mayumi Nakano, Hongyan Shan, Alexa Telgmann-Rauber, Akira Kanno, Zhen Yue, Haixin Chen, Wenqi Li, Yanling Chen, Xiangyang Xu, Yueping Zhang, Shaochun Luo, Helong Chen, Jianming Gao, Zichao Mao, Joseph Chris Pires, Meizhong Luo, Dave Kudrna, Rod A Wing, Blake C Meyers, Kexian Yi, Hong-Zhi Kong, Pierre Lavrijsen, Francesco Sunseri, Agostino Falavigna, Yin Ye, James H Leebens-Mack, Guangyu Chen
The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature communications 8 (1) (2017)
Patrick P Edger, Hanna M Heidel-Fischer, Michaël Bekaert, Jadranka Rota, Gernot Glöckner, Adrian E Platts, David G Heckel, Joshua P Der, Eric K Wafula, Michelle Tang, Johannes A Hofberger, Ann Smithson, Jocelyn C Hall, Matthieu Blanchette, Thomas E Bureau, Stephen I Wright, Claude W dePamphilis, M Eric Schranz, Michael S Barker, Gavin C Conant, Niklas Wahlberg, Heiko Vogel, Joseph Chris Pires, Christopher W Wheat
The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America 112 (27) (2015)

Joseph Chris Pires.css-eqlu8i{font-size:small;padding-left:4px;} (J Chris Pires, J Chris Pires)

Publication Activity (10 Years)

Top Topics

Top Venues

Joseph Chris Pires (J Chris Pires, J Chris Pires)