Arif O Harmanci (Arif Harmanci)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 19

Top Topics

Acute Myeloid Leukemia

Genome Wide Association

Top Venues

Acta neuropathologica

PLoS computational biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Wentao Li, Han-Yang Chen, Xiaoqian Jiang, Arif O Harmanci
FedGMMAT: Federated generalized linear mixed model association tests. PLoS computational biology 20 (7) (2024)
Wentao Li, Han-Yang Chen, Xiaoqian Jiang, Arif O Harmanci
FedGMMAT: Federated generalized linear mixed model association tests. PLoS computational biology 20 (7) (2024)
Wentao Li, Han-Yang Chen, Xiaoqian Jiang, Arif O Harmanci
FedGMMAT: Federated generalized linear mixed model association tests. PLoS computational biology 20 (7) (2024)
Wentao Li, Han-Yang Chen, Xiaoqian Jiang, Arif O Harmanci
FedGMMAT: Federated generalized linear mixed model association tests. PLoS computational biology 20 (7) (2024)
A Basit Khan, Collin W English, William C Chen, Prazwal Athukuri, James C Bayley, Vicky L Brandt, Arya Shetty, Caroline C Hadley, Abrar Choudhury, Hsiang-Chih Lu, Arif O Harmanci, Akdes S Harmanci, Stephen T Magill, David R Raleigh, Tiemo J Klisch, Akash J Patel
Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma. Acta neuropathologica (2023)
A Basit Khan, Collin W English, William C Chen, Prazwal Athukuri, James C Bayley, Vicky L Brandt, Arya Shetty, Caroline C Hadley, Abrar Choudhury, Hsiang-Chih Lu, Arif O Harmanci, Akdes S Harmanci, Stephen T Magill, David R Raleigh, Tiemo J Klisch, Akash J Patel
Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma. Acta neuropathologica 145 (4) (2023)
Poonam N Desai, Bofei Wang, Andre Fonseca, Pamella Borges, Fatima Zahra Jelloul, Patrick K Reville, Eric Lee, Christopher Ly, Akshay V Basi, Jessica L Root, Natalia Baran, Sean M Post, Qing Deng, Hanxiao Sun, Arif O Harmanci, Jared K Burks, Javier A Gomez, Courtney D D DiNardo, Naval G Daver, Gheath Al-Atrash, Marina Y Konopleva, Michael R Green, Dinler Amaral Antunes, P Andrew Futreal, Dapeng Hao, Hussein A Abbas
Single-Cell Profiling of CD8+ T Cells in Acute Myeloid Leukemia Reveals a Continuous Spectrum of Differentiation and Clonal Hyperexpansion. Cancer immunology research (2023)
A Basit Khan, Collin W English, William C Chen, Prazwal Athukuri, James C Bayley, Vicky L Brandt, Arya Shetty, Caroline C Hadley, Abrar Choudhury, Hsiang-Chih Lu, Arif O Harmanci, Akdes S Harmanci, Stephen T Magill, David R Raleigh, Tiemo J Klisch, Akash J Patel
Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma. Acta neuropathologica (2023)
Wentao Li, Miran Kim, Kai Zhang, Han Chen, Xiaoqian Jiang, Arif O Harmanci
COLLAGENE enables privacy-aware federated and collaborative genomic data analysis. Genome biology 24 (1) (2023)
Poonam N Desai, Bofei Wang, Andre Fonseca, Pamella Borges, Fatima Zahra Jelloul, Patrick K Reville, Eric Lee, Christopher Ly, Akshay V Basi, Jessica L Root, Natalia Baran, Sean M Post, Qing Deng, Hanxiao Sun, Arif O Harmanci, Jared K Burks, Javier A Gomez, Courtney D D DiNardo, Naval G Daver, Gheath Al-Atrash, Marina Y Konopleva, Michael R Green, Dinler Amaral Antunes, P Andrew Futreal, Dapeng Hao, Hussein A Abbas
Single-Cell Profiling of CD8+ T Cells in Acute Myeloid Leukemia Reveals a Continuous Spectrum of Differentiation and Clonal Hyperexpansion. Cancer immunology research (2023)
A Basit Khan, Collin W English, William C Chen, Prazwal Athukuri, James C Bayley, Vicky L Brandt, Arya Shetty, Caroline C Hadley, Abrar Choudhury, Hsiang-Chih Lu, Arif O Harmanci, Akdes S Harmanci, Stephen T Magill, David R Raleigh, Tiemo J Klisch, Akash J Patel
Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma. Acta neuropathologica 145 (4) (2023)
A Basit Khan, Collin W English, William C Chen, Prazwal Athukuri, James C Bayley, Vicky L Brandt, Arya Shetty, Caroline C Hadley, Abrar Choudhury, Hsiang-Chih Lu, Arif O Harmanci, Akdes S Harmanci, Stephen T Magill, David R Raleigh, Tiemo J Klisch, Akash J Patel
Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma. Acta neuropathologica 145 (4) (2023)
Arif O Harmanci, Akdes Serin Harmanci, Tiemo J Klisch, Akash J Patel
XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples. BMC genomics 23 (1) (2022)
James C Bayley, Caroline C Hadley, Arif O Harmanci, Akdes S Harmanci, Tiemo J Klisch, Akash J Patel
Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies. Science advances 8 (5) (2022)
Arif O Harmanci, Akdes Serin Harmanci, Tiemo J Klisch, Akash J Patel
XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples. BMC genomics 23 (1) (2022)
Su Wang, Miran Kim, Wentao Li, Xiaoqian Jiang, Han Chen, Arif O Harmanci
Privacy-aware estimation of relatedness in admixed populations. Briefings in bioinformatics 23 (6) (2022)
Arif O Harmanci, Akdes Serin Harmanci, Tiemo J Klisch, Akash J Patel
XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples. BMC genomics 23 (1) (2022)
Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Patrick McGillivray, Hongbo Yang, Jason Liu, William Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif O Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant Emani, Yucheng T Yang, Timur Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera-Mulia, Jessica Adrian, James R Broach, Michael Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla-Garcia, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J Klein, Michael Paul Snyder, David M Gilbert, Kevin Y Yip, Chao Cheng, Feng Yue, X Shirley Liu, Kevin P White, Mark B Gerstein
An integrative ENCODE resource for cancer genomics. Nature communications 11 (1) (2020)
Arif O Harmanci, Mark B Gerstein
Analysis of sensitive information leakage in functional genomics signal profiles through genomic deletions. Nature communications 9 (1) (2018)