Feng Yue

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 37

Top Venues

Nature communications

Genome research

Cancer research communications

Nature

Northwestern University Feinberg School of Medicine

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Northwestern University Feinberg School of Medicine Jul 01 2019

United States

Associate Professor :: Biochemistry and Molecular Genetics

Pennsylvania State University Oct 01 2013 - Jun 30 2019

United States

Assistant Professor :: Biochemistry and Molecular Biology

Publications

Aileen Szczepanski, Natsumi Tsuboyama, Huijue Lyu, Ping Wang, Oguzhan Beytullahoglu, Te Zhang, Benjamin David Singer, Feng Yue, Zibo Zhao, Lu Wang
A SWI/SNF-dependent transcriptional regulation mediated by POU2AF2/C11orf53 at enhancer. Nature communications 15 (1) (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research 34 (7) (2024)
Aileen Szczepanski, Natsumi Tsuboyama, Huijue Lyu, Ping Wang, Oguzhan Beytullahoglu, Te Zhang, Benjamin David Singer, Feng Yue, Zibo Zhao, Lu Wang
A SWI/SNF-dependent transcriptional regulation mediated by POU2AF2/C11orf53 at enhancer. Nature communications 15 (1) (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research 34 (7) (2024)
Aileen Szczepanski, Natsumi Tsuboyama, Huijue Lyu, Ping Wang, Oguzhan Beytullahoglu, Te Zhang, Benjamin David Singer, Feng Yue, Zibo Zhao, Lu Wang
A SWI/SNF-dependent transcriptional regulation mediated by POU2AF2/C11orf53 at enhancer. Nature communications 15 (1) (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research (2024)
Aileen Szczepanski, Natsumi Tsuboyama, Huijue Lyu, Ping Wang, Oguzhan Beytullahoglu, Te Zhang, Benjamin David Singer, Feng Yue, Zibo Zhao, Lu Wang
A SWI/SNF-dependent transcriptional regulation mediated by POU2AF2/C11orf53 at enhancer. Nature communications 15 (1) (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research (2024)
Xiaotao Wang, Feng Yue
HiCLift: A fast and efficient tool for converting chromatin interaction data between genome assemblies. bioRxiv : the preprint server for biology (2023)
Diana Saleiro, Ewa M Kosciuczuk, Mariafausta Fischietti, Ricardo E Perez, G Sohae Yang, Frank D Eckerdt, Elspeth M Beauchamp, Ye Hou, Qixuan Wang, Rona Singer Weinberg, Eleanor N Fish, Feng Yue, Ronald Hoffman, Leonidas C Platanias
Targeting CHAF1B Enhances IFN Activity against Myeloproliferative Neoplasm Cells. Cancer research communications 3 (5) (2023)
Kadir Buyukcelebi, Xintong Chen, Fatih Abdula, Hoda Elkafas, Alexander James Duval, Harun Ozturk, Fidan Seker-Polat, Qiushi Jin, Ping Yin, Yue Feng, Serdar E Bulun, Jian-Jun Wei, Feng Yue, Mazhar Adli
Engineered MED12 mutations drive leiomyoma-like transcriptional and metabolic programs by altering the 3D genome compartmentalization. Nature communications 14 (1) (2023)
Diana Saleiro, Ewa M Kosciuczuk, Mariafausta Fischietti, Ricardo E Perez, G Sohae Yang, Frank D Eckerdt, Elspeth M Beauchamp, Ye Hou, Qixuan Wang, Rona Singer Weinberg, Eleanor N Fish, Feng Yue, Ronald Hoffman, Leonidas C Platanias
Targeting CHAF1B Enhances IFN Activity against Myeloproliferative Neoplasm Cells. Cancer research communications 3 (5) (2023)
Diana Saleiro, Ewa M Kosciuczuk, Mariafausta Fischietti, Ricardo E Perez, G Sohae Yang, Frank D Eckerdt, Elspeth M Beauchamp, Ye Hou, Qixuan Wang, Rona Singer Weinberg, Eleanor N Fish, Feng Yue, Ronald Hoffman, Leonidas C Platanias
Targeting CHAF1B Enhances IFN Activity against Myeloproliferative Neoplasm Cells. Cancer research communications 3 (5) (2023)
Kadir Buyukcelebi, Xintong Chen, Fatih Abdula, Alexander Duval, Harun Ozturk, Fidan Seker-Polat, Qiushi Jin, Ping Yin, Yue Feng, Jian-Jun Wei, Serdar Bulun, Feng Yue, Mazhar Adli
Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization. Research square (2023)
Diana Saleiro, Ewa M Kosciuczuk, Mariafausta Fischietti, Ricardo E Perez, G Sohae Yang, Frank D Eckerdt, Elspeth M Beauchamp, Ye Hou, Qixuan Wang, Rona Singer Weinberg, Eleanor N Fish, Feng Yue, Ronald Hoffman, Leonidas C Platanias
Targeting CHAF1B Enhances IFN Activity against Myeloproliferative Neoplasm Cells. Cancer research communications 3 (5) (2023)
Kadir Buyukcelebi, Xintong Chen, Fatih Abdula, Alexander Duval, Harun Ozturk, Fidan Seker-Polat, Qiushi Jin, Ping Yin, Yue Feng, Jian-Jun Wei, Serdar Bulun, Feng Yue, Mazhar Adli
Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization. Research square (2023)
Tingting Liu, Juan Wang, Hongbo Yang, Qiushi Jin, Xiao-Tao Wang, Yihao Fu, Yu Luan, Qixuan Wang, Mark W Youngblood, Xinyan Lu, Lucia Casadei, Raphael Etomar Pollock, Feng Yue
Enhancer co-amplification and hijacking promote oncogene expression in liposarcoma. Cancer research (2023)
Diana Saleiro, Ewa M Kosciuczuk, Mariafausta Fischietti, Ricardo E Perez, G Sohae Yang, Frank D Eckerdt, Elspeth M Beauchamp, Ye Hou, Qixuan Wang, Rona Singer Weinberg, Eleanor N Fish, Feng Yue, Ronald Hoffman, Leonidas C Platanias
Targeting CHAF1B Enhances IFN Activity against Myeloproliferative Neoplasm Cells. Cancer research communications 3 (5) (2023)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Weaver, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Cross-species regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. bioRxiv : the preprint server for biology (2023)
Zaili Luo, Mingyang Xia, Wei Shi, Chuntao Zhao, Jiajia Wang, Dazhuan Xin, Xinran Dong, Yu Xiong, Feng Zhang, Kalen Berry, Sean Ogurek, Xuezhao Liu, Rohit Rao, Rui Xing, Lai Man Natalie Wu, Siying Cui, Lingli Xu, Yifeng Lin, Wenkun Ma, Shuaiwei Tian, Qi Xie, Li Zhang, Mei Xin, Xiao-Tao Wang, Feng Yue, Haizi Zheng, Yaping Liu, Charles B Stevenson, Peter M K de Blank, John P Perentesis, Richard J Gilbertson, Hao Li, Jie Ma, Wen-Hao Zhou, Michael D Taylor, Qing Richard Lu
Human fetal cerebellar cell atlas informs medulloblastoma origin and oncogenesis. Nature (2022)
Jie Xu, Fan Song, Huijue Lyu, Mikoto Kobayashi, Baozhen Zhang, Ziyu Zhao, Ye Hou, Xiao-Tao Wang, Yu Luan, Bei Jia, Lena Stasiak, Josiah Hiu-Yuen Wong, Qixuan Wang, Qi Jin, Qiushi Jin, Yihao Fu, Hongbo Yang, Ross Cameron Hardison, Sinisa Dovat, Leonidas C Platanias, Yarui Diao, Yue Yang, Tomoko Yamada, Aaron D Viny, Ross L Levine, David Claxton, James R Broach, Hong Zheng, Feng Yue
Subtype-specific 3D genome alteration in acute myeloid leukaemia. Nature 611 (7935) (2022)
Xiao-Tao Wang, Yu Luan, Feng Yue
EagleC: A deep-learning framework for detecting a full range of structural variations from bulk and single-cell contact maps. Science advances 8 (24) (2022)
Hongbo Yang, Hui Zhang, Yu Luan, Tingting Liu, Wentao Yang, Kathryn G Roberts, Mao-Xiang Qian, Bo Zhang, Wenjian Yang, Virginia Perez-Andreu, Jie Xu, Sriranga Iyyanki, Da Kuang, Lena A Stasiak, Shalini C Reshmi, Julie Gastier-Foster, Colton Smith, Ching-Hong Pui, Williams E Evans, Stephen P Hunger, Leonidas C Platanias, Mary V Relling, Charles G Mullighan, Mignon L Loh, Feng Yue, Jun J Yang
Noncoding genetic variation in GATA3 increases acute lymphoblastic leukemia risk through local and global changes in chromatin conformation. Nature genetics 54 (2) (2022)
Daniel J Emerson, Peiyao A Zhao, Ashley L Cook, R Jordan Barnett, Kyle N Klein, Dalila Saulebekova, Chunmin Ge, Linda Zhou, Zoltan Simandi, Miriam K Minsk, Katelyn R Titus, Weitao Wang, Wanfeng Gong, Di Zhang, Liyan Yang, Sergey V Venev, Johan H Gibcus, Hongbo Yang, Takayo Sasaki, Masato T Kanemaki, Feng Yue, Job Dekker, Chun-Long Chen, David M Gilbert, Jennifer E Phillips-Cremins
Cohesin-mediated loop anchors confine the locations of human replication origins. Nature 606 (7915) (2022)
Hyung Joo Lee, Yiran Hou, Ju Heon Maeng, Nakul M Shah, Yujie Chen, Heather A Lawson, Hongbo Yang, Feng Yue, Ting Wang
Epigenomic analysis reveals prevalent contribution of transposable elements to cis -regulatory elements, tissue-specific expression, and alternative promoters in zebrafish. Genome research 32 (7) (2022)
Fei Sun, Jianhong Ou, Adam R Shoffner, Yu Luan, Hongbo Yang, Lingyun Song, Alexias Safi, Yingxi Cao, Feng Yue, Gregory E Crawford, Kenneth D Poss
Enhancer selection dictates gene expression responses in remote organs during tissue regeneration. Nature cell biology 24 (5) (2022)
Tejaswi Iyyanki, Baozhen Zhang, Qixuan Wang, Ye Hou, Qiushi Jin, Jie Xu, Hongbo Yang, Tingting Liu, Xiaotao Wang, Fan Song, Yu Luan, Hironobu Yamashita, Ruby Chien, Huijue Lyu, Lijun Zhang, Lu Wang, Joshua Warrick, Jay D Raman, Joshua J Meeks, David J DeGraff, Feng Yue
Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer. Genome biology 22 (1) (2021)
Xiaotao Wang, Jie Xu, Baozhen Zhang, Ye Hou, Fan Song, Huijue Lyu, Feng Yue
Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes. Nature methods 18 (6) (2021)
Haowen Zhang, Li Song, Xiao-Tao Wang, Haoyu Cheng, Chenfei Wang, Clifford A Meyer, Tao Liu, Ming Tang, Srinivas Aluru, Feng Yue, X Shirley Liu, Heng Li
Fast alignment and preprocessing of chromatin profiles with Chromap. Nature communications 12 (1) (2021)
Juan Wang, Tina Yi-Ting Huang, Ye Hou, Elizabeth Thomas Bartom, Xinyan Lu, Ali Shilatifard, Feng Yue, Amanda Muhs Saratsis
Epigenomic landscape and 3D genome structure in pediatric high-grade glioma. Science advances 7 (23) (2021)
Guanjue Xiang, Cheryl A Keller, Elisabeth F Heuston, Belinda M Giardine, Lin An, Alexander Q Wixom, Amber Miller, April Cockburn, Michael E G Sauria, Kathryn Weaver, Jens Lichtenberg, Berthold Göttgens, Qunhua Li, David Bodine, Shaun Mahony, James Taylor, Gerd A Blobel, Mitchell J Weiss, Yong Cheng, Feng Yue, Jim R Hughes, Douglas R Higgs, Yu Zhang, Ross Cameron Hardison
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis. Genome research 30 (3) (2020)
Tarik J Salameh, Xiaotao Wang, Fan Song, Bo Zhang, Sage M Wright, Chachrit Khunsriraksakul, Yijun Ruan, Feng Yue
A supervised learning framework for chromatin loop detection in genome-wide contact maps. Nature communications 11 (1) (2020)
Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Patrick McGillivray, Hongbo Yang, Jason Liu, William Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif O Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant Emani, Yucheng T Yang, Timur Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera-Mulia, Jessica Adrian, James R Broach, Michael Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla-Garcia, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J Klein, Michael Paul Snyder, David M Gilbert, Kevin Y Yip, Chao Cheng, Feng Yue, X Shirley Liu, Kevin P White, Mark B Gerstein
An integrative ENCODE resource for cancer genomics. Nature communications 11 (1) (2020)
Hongbo Yang, Yu Luan, Tingting Liu, Hyung Joo Lee, Li Fang, Yanli Wang, Xiaotao Wang, Bo Zhang, Qiushi Jin, Khai Chung Ang, Xiaoyun Xing, Juan Wang, Jie Xu, Fan Song, Iyyanki Sriranga, Chachrit Khunsriraksakul, Tarik Salameh, Daofeng Li, Mayank N K Choudhary, Jacek Topczewski, Kai Wang, Glenn S Gerhard, Ross Cameron Hardison, Ting Wang, Keith C Cheng, Feng Yue
A map of cis-regulatory elements and 3D genome structures in zebrafish. Nature 588 (7837) (2020)
Yanli Wang, Fan Song, Bo Zhang, Lijun Zhang, Jie Xu, Da Kuang, Daofeng Li, Mayank N K Choudhary, Yun Li, Ming Hu, Ross Hardison, Ting Wang, Feng Yue
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions. Genome biology 19 (1) (2018)
Jesse R Dixon, Jie Xu, Vishnu Dileep, Ye Zhan, Fan Song, Victoria T Le, Galip Gürkan Yardımcı, Abhijit Chakraborty, Darrin V Bann, Yanli Wang, Royden Clark, Lijun Zhang, Hongbo Yang, Tingting Liu, Sriranga Iyyanki, Lin An, Christopher Pool, Takayo Sasaki, Juan Carlos Rivera-Mulia, Hakan Ozadam, Bryan R Lajoie, Rajinder Kaul, Michael Buckley, Kristen Lee, Morgan Diegel, Dubravka Pezic, Christina Ernst, Suzana Hadjur, Duncan T Odom, John A Stamatoyannopoulos, James R Broach, Ross C Hardison, Ferhat Ay, William Stafford Noble, Job Dekker, David M Gilbert, Feng Yue
Integrative detection and analysis of structural variation in cancer genomes. Nature genetics 50 (10) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Feng Yue