Armin Scheben

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 20

Top Topics

Top Venues

bioRxiv : the preprint server for biology

Genome research

Genome biology and evolution

Plant biotechnology journal

This page only lists publications with an associated author ORCID identifier.

Publications

Shujun Ou, Armin Scheben, Tyler Collins, Yinjie Qiu, Arun S Seetharam, Claire C Menard, Nancy Manchanda, Jonathan I Gent, Michael C Schatz, Sarah N Anderson, Matthew B Hufford, Candice N Hirsch
Differences in activity and stability drive transposable element variation in tropical and temperate maize. Genome research (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Wei-Yun Lai, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
Ryan N Serio, Armin Scheben, Billy Lu, Domenic V Gargiulo, Lucrezia Patruno, Caroline L Buckholtz, Ryan J Chaffee, Megan C Jibilian, Steven G Persaud, Stephen J Staklinski, Rebecca Hassett, Lise M Brault, Daniele Ramazzotti, Christopher E Barbieri, Adam C Siepel, Dawid G Nowak
Clonal Lineage Tracing with Somatic Delivery of Recordable Barcodes Reveals Migration Histories of Metastatic Prostate Cancer. Cancer discovery (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Wei-Yun Lai, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Wei-Yun Lai, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
Stephen J Staklinski, Armin Scheben, Adam C Siepel, Michael S Kilberg
Utility of AlphaMissense predictions in Asparagine Synthetase deficiency variant classification. bioRxiv : the preprint server for biology (2023)
Armin Scheben, Olivia Mendivil Ramos, Melissa Kramer, Sara Goodwin, Sara J Oppenheim, Daniel J Becker, Michael C Schatz, Nancy B Simmons, Adam C Siepel, W Richard McCombie
Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats. Genome biology and evolution 15 (9) (2023)
Benjamin Berube, Evan Ernst, Jonathan Cahn, Benjamin Roche, Cristiane de Santis Alves, Jason Lynn, Armin Scheben, Adam C Siepel, Jeffrey Ross-Ibarra, Jerry Kermicle, Rob Martienssen
Teosinte Pollen Drive guides maize domestication and evolution by RNAi. bioRxiv : the preprint server for biology (2023)
Dennis Byrne, Armin Scheben, John K Scott, Bruce L Webber, Kathryn L Batchelor, Anita A Severn-Ellis, Ben Gooden, Karen L Bell
Genomics reveals the history of a complex plant invasion and improves the management of a biological invasion from the South African-Australian biotic exchange. Ecology and evolution 12 (8) (2022)
Felix Wolter, Patrick Schindele, Natalja Beying, Armin Scheben, Holger Puchta
Different DNA repair pathways are involved in single-strand break-induced genomic changes in plants. The Plant cell 33 (11) (2022)
Yaoyao Wu, Lynn Johnson, Baoxing Song, Maria Cinta Romay, Michelle C Stitzer, Adam C Siepel, Edward S Buckler, Armin Scheben
A multiple alignment workflow shows the effect of repeat masking and parameter tuning on alignment in plants. The plant genome 15 (2) (2022)
Philipp Emanuel Bayer, Armin Scheben, Agnieszka A Golicz, Yuxuan Yuan, Sébastien Faure, HueyTyng Lee, Harmeet Singh Chawla, Robyn Anderson, Ian Bancroft, Harsh Raman, Yong Pyo Lim, Steven Robbens, Lixi Jiang, Shengyi Liu, Michael S Barker, Michael Eric Schranz, Xiaowu Wang, Graham John King, Joseph Chris Pires, Boulos Chalhoub, Rod J Snowdon, Jacqueline Batley, David Edwards
Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids. Plant biotechnology journal 19 (12) (2021)
Haifei Hu, Armin Scheben, Brent Verpaalen, Soodeh Tirnaz, Philipp Emanuel Bayer, Richard G J Hodel, Jacqueline Batley, Douglas Edward Soltis, Pamela S Soltis, David Edwards
Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation. The New phytologist (2021)
Sofie Vranken, Thomas Wernberg, Armin Scheben, Anita Alice Severn-Ellis, Jacqueline Batley, Philipp Emanuel Bayer, David Edwards, David Wheeler, Melinda Ann Coleman
Genotype-Environment mismatch of kelp forests under climate change. Molecular ecology 30 (15) (2021)
Ziyi Mo, Armin Scheben, Joshua Steinberg, Adam C Siepel, Robert A Martienssen
Circadian immunity, sunrise time and the seasonality of respiratory infections. medRxiv : the preprint server for health sciences (2021)
Armin Scheben, Diego Hernan Hojsgaard
Can We Use Gene-Editing to Induce Apomixis in Sexual Plants? Genes 11 (7) (2020)
Philipp Emanuel Bayer, Agnieszka A Golicz, Armin Scheben, Jacqueline Batley, David Edwards
Plant pan-genomes are the new reference. Nature plants 6 (8) (2020)