Michelle C Stitzer (Michelle Stitzer)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 23

Top Venues

PLoS genetics

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

The plant genome

University of California Davis (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of California Davis Sep 01 2013 - Nov 30 2019

United States

PHD

Publications

JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Wei-Yun Lai, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Wei-Yun Lai, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Wei-Yun Lai, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
JingJing Zhai, Aaron Gokaslan, Yair Schiff, Ana Berthel, Zong-Yan Liu, Zachary R Miller, Armin Scheben, Michelle C Stitzer, Maria Cinta Romay, Edward S Buckler, Volodymyr Kuleshov
Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv : the preprint server for biology (2024)
Ning Yang, Yuebin Wang, Xiangguo Liu, Minliang Jin, Miguel Vallebueno-Estrada, Erin Calfee, Lu Chen, Brian P Dilkes, Songtao Gui, Xingming Fan, Thomas K Harper, Douglas J Kennett, Wenqiang Li, Yanli Lu, Junqiang Ding, Ziqi Chen, Jingyun Luo, Sowmya Mambakkam, Mitra Menon, Samantha J Snodgrass, Carl Veller, Shenshen Wu, Siying Wu, Lin Zhuo, Yingjie Xiao, Xiaohong Yang, Michelle C Stitzer, Daniel Runcie, Jianbing Yan, Jeffrey Ross-Ibarra
Two teosintes made modern maize. Science (New York, N.Y.) 382 (6674) (2023)
Manisha Munasinghe, Andrew Read, Michelle C Stitzer, Baoxing Song, Claire C Menard, Kristy Yubo Ma, Yaniv Brandvain, Candice N Hirsch, Nathan Springer
Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion. PLoS genetics 19 (12) (2023)
Manisha Munasinghe, Andrew Read, Michelle C Stitzer, Baoxing Song, Claire C Menard, Kristy Yubo Ma, Yaniv Brandvain, Candice N Hirsch, Nathan Springer
Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion. PLoS genetics 19 (12) (2023)
Manisha Munasinghe, Andrew Read, Michelle C Stitzer, Baoxing Song, Claire C Menard, Kristy Yubo Ma, Yaniv Brandvain, Candice N Hirsch, Nathan Springer
Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion. PLoS genetics 19 (12) (2023)
Manisha Munasinghe, Andrew Read, Michelle C Stitzer, Baoxing Song, Claire C Menard, Kristy Yubo Ma, Yaniv Brandvain, Candice N Hirsch, Nathan Springer
Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion. PLoS genetics 19 (12) (2023)
Baoxing Song, Santiago Marco-Sola, Miquel Moreto, Lynn Johnson, Edward S Buckler, Michelle C Stitzer
AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication. Proceedings of the National Academy of Sciences of the United States of America 119 (1) (2022)
Yaoyao Wu, Lynn Johnson, Baoxing Song, Maria Cinta Romay, Michelle C Stitzer, Adam C Siepel, Edward S Buckler, Armin Scheben
A multiple alignment workflow shows the effect of repeat masking and parameter tuning on alignment in plants. The plant genome 15 (2) (2022)
Alexandre J Fournier-Level, Mark A Taylor, Jefferson F Paril, Alejandra Martínez-Berdeja, Michelle C Stitzer, Martha D Cooper, Judith L Roe, Amity M Wilczek, Johanna Schmitt
Adaptive significance of flowering time variation across natural seasonal environments in Arabidopsis thaliana. The New phytologist 234 (2) (2022)
Michelle C Stitzer, Sarah N Anderson, Springer M Nathan, Jeffrey Ross-Ibarra
The genomic ecosystem of transposable elements in maize. PLoS genetics 17 (10) (2021)
Alejandra Martínez-Berdeja, Michelle C Stitzer, Mark A Taylor, Miki Okada, Exequiel Ezcurra, Daniel E Runcie, Johanna Schmitt
Functional variants of DOG1 control seed chilling responses and variation in seasonal life-history strategies in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 117 (5) (2020)
Jaclyn M Noshay, Sarah N Anderson, Peng Zhou, Lexiang Ji, William Ricci, Zefu Lu, Michelle C Stitzer, Peter A Crisp, Candice N Hirsch, Xiaoyu Zhang, Robert J Schmitz, Springer M Nathan
Monitoring the interplay between transposable element families and DNA methylation in maize. PLoS genetics 15 (9) (2019)
Wei Xue, Sarah N Anderson, Xufeng Wang, Liyan Yang, Peter A Crisp, Qing Li, Jaclyn M Noshay, Patrice S Albert, James A Birchler, Paul Bilinski, Michelle C Stitzer, Jeffrey Ross-Ibarra, Sherry A Flint-Garcia, Xuemei Chen, Springer M Nathan, John F Doebley
Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize. Genetics 213 (1) (2019)
Sarah N Anderson, Michelle C Stitzer, Alex B Brohammer, Peng Zhou, Jaclyn M Noshay, Christine H O'Connor, Cory D Hirsch, Jeffrey Ross-Ibarra, Candice N Hirsch, Springer M Nathan
Transposable elements contribute to dynamic genome content in maize. The Plant journal : for cell and molecular biology 100 (5) (2019)
Marcela Karey Tello-Ruiz, Cristina F Marco, Fei-Man Hsu, Rajdeep S Khangura, Pengfei Qiao, Sirjan Sapkota, Michelle C Stitzer, Rachael Wasikowski, Hao Wu, Junpeng Zhan, Kapeel Chougule, Lindsay C Barone, Cornel Ghiban, Demitri Muna, Andrew C Olson, Liya Wang, Doreen Ware, David A Micklos
Double triage to identify poorly annotated genes in maize: The missing link in community curation. PloS one 14 (10) (2019)
Sarah N Anderson, Michelle C Stitzer, Peng Zhou, Jeffrey Ross-Ibarra, Cory D Hirsch, Springer M Nathan
Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize. G3 (Bethesda, Md.) 9 (11) (2019)
Michelle C Stitzer, Philipp Brand
Digest: Hybrid incompatibilities and introgression in wild monkeyflowers. Evolution; international journal of organic evolution 72 (11) (2018)
Wenbin Mei, Markus G Stetter, Daniel J Gates, Michelle C Stitzer, Jeffrey Ross-Ibarra
Adaptation in plant genomes: Bigger is different. American journal of botany 105 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Michelle C Stitzer (Michelle Stitzer)