Atul Janardhan Butte (A J Butte, Atul J Butte, Atul Butte)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 84

Top Venues

Clinical pharmacology and therapeutics

PloS one

Research square

Nature medicine

University of California San Francisco

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Francisco Apr 01 2015

United States

Director and Distinguished Professor :: Bakar Computational Health Sciences Institute

Publications

Merle Behr, Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguirre, Omer Ronen, Chengzhong Ye, Euan Ashley, Atul Janardhan Butte, Rima Arnaout, Ben Brown, James R Priest, Bin Yu
Learning epistatic polygenic phenotypes with Boolean interactions. PloS one 19 (4) (2024)
Anna Lerman Silverman, Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz, Mahalakshmi Parakala, Samer El-Kamary, Ohenewaa Ahima, Artur A Belov, Lauren Choi, Monisha Billings, Yan Li, Nadia Habal, Qi Liu, Jawahar Tiwari, Atul Janardhan Butte, Vivek Ashok Rudrapatna
Algorithmic Identification of Treatment-Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease. Clinical pharmacology and therapeutics (2024)
Carey Beth Goldberg, Laura Adams, David Blumenthal, Patricia Flatley Brennan, Noah Brown, Atul Janardhan Butte, Morgan Cheatham, Dave deBronkart, Jennifer Dixon, Jeffrey Drazen, Barbara J Evans, Sara M Hoffman, Chris C Holmes, Peter Lee, Arjun Kumar Manrai, Gilbert S Omenn, Jonathan B Perlin, Rachel Ramoni, Guillermo Sapiro, Rupa Sarkar, Harpreet Sood, Effy Vayena, Isaac S Kohane, null null
To do no harm - and the most good - with AI in health care. Nature medicine 30 (3) (2024)
Shenghuan Sun, Travis Zack, Christopher Y K Williams, Madhumita Sushil, Atul Janardhan Butte
Topic modeling on clinical social work notes for exploring social determinants of health factors. JAMIA open 7 (1) (2024)
Zsombor Zrubka, Gábor Kertész, László Gulácsi, János Czere, Áron Hölgyesi, Hossein Motahari Nezhad, Abdolhossein Hemmati-Sarapardeh, Levente Kovacs, Atul Janardhan Butte, Márta Péntek
The Reporting Quality of Machine Learning Studies on Pediatric Diabetes Mellitus: Systematic Review. Journal of medical Internet research 26 (2024)
Nikita Mehandru, Brenda Y Miao, Eduardo Rodriguez Almaraz, Madhumita Sushil, Atul Janardhan Butte, Ahmed M Alaa
Evaluating large language models as agents in the clinic. NPJ digital medicine 7 (1) (2024)
Zsombor Zrubka, Gábor Kertész, László Gulácsi, János Czere, Áron Hölgyesi, Hossein Motahari Nezhad, Abdolhossein Hemmati-Sarapardeh, Levente Kovacs, Atul Janardhan Butte, Márta Péntek
The Reporting Quality of Machine Learning Studies on Pediatric Diabetes Mellitus: Systematic Review. Journal of medical Internet research 26 (2024)
Anna Lerman Silverman, Balu Bhasuran, Arman Mosenia, Fatema Yasini, Gokul Ramasamy, Imon Banerjee, Saransh Gupta, Taline Mardirossian, Rohan Narain, Justin Sewell, Atul Janardhan Butte, Vivek Ashok Rudrapatna
Accurate, Robust, and Scalable Machine Abstraction of Mayo Endoscopic Subscores From Colonoscopy Reports. Inflammatory bowel diseases (2024)
Carey Beth Goldberg, Laura Adams, David Blumenthal, Patricia Flatley Brennan, Noah Brown, Atul Janardhan Butte, Morgan Cheatham, Dave deBronkart, Jennifer Dixon, Jeffrey Drazen, Barbara J Evans, Sara M Hoffman, Chris C Holmes, Peter Lee, Arjun Kumar Manrai, Gilbert S Omenn, Jonathan B Perlin, Rachel Ramoni, Guillermo Sapiro, Rupa Sarkar, Harpreet Sood, Effy Vayena, Isaac S Kohane, null null
To do no harm - and the most good - with AI in health care. Nature medicine 30 (3) (2024)
Anu Patel, Sarah B Doernberg, Travis Zack, Atul Janardhan Butte, Kendra K Radtke
Predictive Modeling of Drug-Related Adverse Events with Real-World Data: A Case Study of Linezolid Hematologic Outcomes. Clinical pharmacology and therapeutics 115 (4) (2024)
Merle Behr, Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguirre, Omer Ronen, Chengzhong Ye, Euan Ashley, Atul Janardhan Butte, Rima Arnaout, Ben Brown, James R Priest, Bin Yu
Learning epistatic polygenic phenotypes with Boolean interactions. PloS one 19 (4) (2024)
Merle Behr, Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguirre, Omer Ronen, Chengzhong Ye, Euan Ashley, Atul Janardhan Butte, Rima Arnaout, Ben Brown, James R Priest, Bin Yu
Learning epistatic polygenic phenotypes with Boolean interactions. PloS one 19 (4) (2024)
Junlang Li, Shenghuan Sun, Dashuai Zhu, Xuan Mei, Yongbo Lyu, Ke Cheng, Yuan Li, Shuo Liu, Zhenzhen Wang, Shiqi Hu, Halle J Lutz, Kristen D Popowski, Phuong-Uyen Cao Dinh, Atul Janardhan Butte, Ke Cheng
Inhalable Stem Cell Exosomes Promote Heart Repair After Myocardial Infarction. Circulation 150 (9) (2024)
Merle Behr, Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguirre, Omer Ronen, Chengzhong Ye, Euan Ashley, Atul Janardhan Butte, Rima Arnaout, Ben Brown, James R Priest, Bin Yu
Learning epistatic polygenic phenotypes with Boolean interactions. PloS one 19 (4) (2024)
Anna Lerman Silverman, Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz, Mahalakshmi Parakala, Samer El-Kamary, Ohenewaa Ahima, Artur A Belov, Lauren Choi, Monisha Billings, Yan Li, Nadia Habal, Qi Liu, Jawahar Tiwari, Atul Janardhan Butte, Vivek Ashok Rudrapatna
Algorithmic Identification of Treatment-Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease. Clinical pharmacology and therapeutics (2024)
Zsombor Zrubka, Gábor Kertész, László Gulácsi, János Czere, Áron Hölgyesi, Hossein Motahari Nezhad, Abdolhossein Hemmati-Sarapardeh, Levente Kovacs, Atul Janardhan Butte, Márta Péntek
The Reporting Quality of Machine Learning Studies on Pediatric Diabetes Mellitus: Systematic Review. Journal of medical Internet research 26 (2024)
Carey Beth Goldberg, Laura Adams, David Blumenthal, Patricia Flatley Brennan, Noah Brown, Atul Janardhan Butte, Morgan Cheatham, Dave deBronkart, Jennifer Dixon, Jeffrey Drazen, Barbara J Evans, Sara M Hoffman, Chris C Holmes, Peter Lee, Arjun Kumar Manrai, Gilbert S Omenn, Jonathan B Perlin, Rachel Ramoni, Guillermo Sapiro, Rupa Sarkar, Harpreet Sood, Effy Vayena, Isaac S Kohane, null null
To do no harm - and the most good - with AI in health care. Nature medicine (2024)
Madhumita Sushil, Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu, Yuwei Quan, Atul Janardhan Butte
A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification. Research square (2024)
Nikita Mehandru, Brenda Y Miao, Eduardo Rodriguez Almaraz, Madhumita Sushil, Atul Janardhan Butte, Ahmed M Alaa
Evaluating large language models as agents in the clinic. NPJ digital medicine 7 (1) (2024)
Anna Lerman Silverman, Balu Bhasuran, Arman Mosenia, Fatema Yasini, Gokul Ramasamy, Imon Banerjee, Saransh Gupta, Taline Mardirossian, Rohan Narain, Justin Sewell, Atul Janardhan Butte, Vivek Ashok Rudrapatna
Accurate, Robust, and Scalable Machine Abstraction of Mayo Endoscopic Subscores From Colonoscopy Reports. Inflammatory bowel diseases (2024)
Madhumita Sushil, Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu, Yuwei Quan, Atul Janardhan Butte
A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification. Research square (2024)
Shenghuan Sun, Travis Zack, Christopher Y K Williams, Madhumita Sushil, Atul Janardhan Butte
Topic modeling on clinical social work notes for exploring social determinants of health factors. JAMIA open 7 (1) (2024)
Madhumita Sushil, Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu, Yuwei Quan, Atul Janardhan Butte
A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification. Research square (2024)
Anu Patel, Sarah B Doernberg, Travis Zack, Atul Janardhan Butte, Kendra K Radtke
Predictive Modeling of Drug-Related Adverse Events with Real-World Data: A Case Study of Linezolid Hematologic Outcomes. Clinical pharmacology and therapeutics 115 (4) (2024)
Anu Patel, Sarah B Doernberg, Travis Zack, Atul Janardhan Butte, Kendra K Radtke
Predictive Modeling of Drug-Related Adverse Events with Real-World Data: A Case Study of Linezolid Hematologic Outcomes. Clinical pharmacology and therapeutics 115 (4) (2024)
Anna Lerman Silverman, Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz, Mahalakshmi Parakala, Samer El-Kamary, Ohenewaa Ahima, Artur A Belov, Lauren Choi, Monisha Billings, Yan Li, Nadia Habal, Qi Liu, Jawahar Tiwari, Atul Janardhan Butte, Vivek Ashok Rudrapatna
Algorithmic Identification of Treatment-Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease. Clinical pharmacology and therapeutics 115 (6) (2024)
Junlang Li, Shenghuan Sun, Dashuai Zhu, Xuan Mei, Yongbo Lyu, Ke Cheng, Yuan Li, Shuo Liu, Zhenzhen Wang, Shiqi Hu, Halle J Lutz, Kristen D Popowski, Phuong-Uyen Cao Dinh, Atul Janardhan Butte, Ke Cheng
Inhalable Stem Cell Exosomes Promote Heart Repair After Myocardial Infarction. Circulation 150 (9) (2024)
Anna Lerman Silverman, Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz, Mahalakshmi Parakala, Samer El-Kamary, Ohenewaa Ahima, Artur A Belov, Lauren Choi, Monisha Billings, Yan Li, Nadia Habal, Qi Liu, Jawahar Tiwari, Atul Janardhan Butte, Vivek Ashok Rudrapatna
Algorithmic Identification of Treatment-Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease. Clinical pharmacology and therapeutics (2024)
Madhumita Sushil, Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu, Yuwei Quan, Atul Janardhan Butte
A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification. Research square (2024)
Nikita Mehandru, Brenda Y Miao, Eduardo Rodriguez Almaraz, Madhumita Sushil, Atul Janardhan Butte, Ahmed M Alaa
Evaluating large language models as agents in the clinic. NPJ digital medicine 7 (1) (2024)
Anu Patel, Sarah B Doernberg, Travis Zack, Atul Janardhan Butte, Kendra K Radtke
Predictive Modeling of Drug-Related Adverse Events with Real-World Data: A Case Study of Linezolid Hematologic Outcomes. Clinical pharmacology and therapeutics (2024)
Anna Lerman Silverman, Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz, Mahalakshmi Parakala, Samer El-Kamary, Ohenewaa Ahima, Artur A Belov, Lauren Choi, Monisha Billings, Yan Li, Nadia Habal, Qi Liu, Jawahar Tiwari, Atul Janardhan Butte, Vivek Ashok Rudrapatna
Algorithmic Identification of Treatment-Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease. Clinical pharmacology and therapeutics 115 (6) (2024)
Merle Behr, Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguirre, Omer Ronen, Chengzhong Ye, Euan Ashley, Atul Janardhan Butte, Rima Arnaout, Ben Brown, James R Priest, Bin Yu
Learning epistatic polygenic phenotypes with Boolean interactions. PloS one 19 (4) (2024)
Zsombor Zrubka, Gábor Kertész, László Gulácsi, János Czere, Áron Hölgyesi, Hossein Motahari Nezhad, Abdolhossein Hemmati-Sarapardeh, Levente Kovacs, Atul Janardhan Butte, Márta Péntek
The Reporting Quality of Machine Learning Studies on Pediatric Diabetes Mellitus: Systematic Review. Journal of medical Internet research 26 (2024)
Anna Lerman Silverman, Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz, Mahalakshmi Parakala, Samer El-Kamary, Ohenewaa Ahima, Artur A Belov, Lauren Choi, Monisha Billings, Yan Li, Nadia Habal, Qi Liu, Jawahar Tiwari, Atul Janardhan Butte, Vivek Ashok Rudrapatna
Algorithmic Identification of Treatment-Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease. Clinical pharmacology and therapeutics 115 (6) (2024)
Carla V Rodriguez-Watson, Anthony M Louder, Carly Kabelac, Christopher M Frederick, Natalie E Sheils, Elizabeth H Eldridge, Nancy D Lin, Benjamin D Pollock, Jennifer L Gatz, Shaun J Grannis, Rohit Vashisht, Kanwal Ghauri, Camille Knepper, Sandy Leonard, Peter J Embi, Garrett Jenkinson, Reyna J Klesh, Omai B Garner, Ayan Patel, Lisa Dahm, Aiden Barin, Dan M Cooper, Tom Andriola, Carrie L Byington, Bridgit O Crews, Atul Janardhan Butte, Jeff D Allen
Real-world performance of SARS-Cov-2 serology tests in the United States, 2020. PloS one 18 (2) (2023)
Qianru Wang, Tiffany Tang, Nathan Youlton, Chad Weldy, Ana Kenney, Omer Ronen, John Hughes, Elizabeth Chin, Shirley Sutton, Abhineet Agarwal, Xiao Li, Merle Behr, Karl Kumbier, Christine Moravec, Wai Hong Wilson Tang, Kenneth Margulies, Thomas Cappola, Atul Janardhan Butte, Rima Arnaout, James Brown, James R Priest, Victoria Parikh, Bin Yu, Euan A Ashley
Epistasis regulates genetic control of cardiac hypertrophy. Research square (2023)
Travis Zack, Kurt P Losert, Samantha M Maisel, Jennifer Wild, Amin Yaqubie, Michael Herman, Jennifer J Knox, Robert J Mayer, Alan P Venook, Atul Janardhan Butte, Allison F O'Neill, Ghassan K Abou-Alfa, John D Gordan
Defining incidence and complications of fibrolamellar liver cancer through tiered computational analysis of clinical data. NPJ precision oncology 7 (1) (2023)
Howard Bauchner, Mary M McDermott, Atul Janardhan Butte
Data Sharing Enters a New Era. Annals of internal medicine 176 (3) (2023)
Siavash Zamirpour, Alan E Hubbard, Jean Feng, Atul Janardhan Butte, Romain Pirracchio, Andrew Bishara
Development of a Machine Learning Model of Postoperative Acute Kidney Injury Using Non-Invasive Time-Sensitive Intraoperative Predictors. Bioengineering (Basel, Switzerland) 10 (8) (2023)
Carla V Rodriguez-Watson, Anthony M Louder, Carly Kabelac, Christopher M Frederick, Natalie E Sheils, Elizabeth H Eldridge, Nancy D Lin, Benjamin D Pollock, Jennifer L Gatz, Shaun J Grannis, Rohit Vashisht, Kanwal Ghauri, Camille Knepper, Sandy Leonard, Peter J Embi, Garrett Jenkinson, Reyna J Klesh, Omai B Garner, Ayan Patel, Lisa Dahm, Aiden Barin, Dan M Cooper, Tom Andriola, Carrie L Byington, Bridgit O Crews, Atul Janardhan Butte, Jeff D Allen
Real-world performance of SARS-Cov-2 serology tests in the United States, 2020. PloS one 18 (2) (2023)
Howard Bauchner, Mary M McDermott, Atul Janardhan Butte
Data Sharing Enters a New Era. Annals of internal medicine 176 (3) (2023)
Howard Bauchner, Mary M McDermott, Atul Janardhan Butte
Data Sharing Enters a New Era. Annals of internal medicine 176 (3) (2023)
Vivek Ashok Rudrapatna, Vignesh G Ravindranath, Douglas V Arneson, Arman Mosenia, Atul Janardhan Butte, Shan Wang
Personalizing treatment selection in Crohn's disease: a meta-analysis of individual participant data from fifteen randomized controlled trials. medRxiv : the preprint server for health sciences (2023)
Travis Zack, Kurt P Losert, Samantha M Maisel, Jennifer Wild, Amin Yaqubie, Michael Herman, Jennifer J Knox, Robert J Mayer, Alan P Venook, Atul Janardhan Butte, Allison F O'Neill, Ghassan K Abou-Alfa, John D Gordan
Defining incidence and complications of fibrolamellar liver cancer through tiered computational analysis of clinical data. NPJ precision oncology 7 (1) (2023)
Michelle Wang, Gregory M Goldgof, Ayan Patel, Barbee I Whitaker, Artur A Belov, Brian Chan, Evan Phelps, Benjamin Rubin, Steven Anderson, Atul Janardhan Butte
Novel computational methods on electronic health record yields new estimates of transfusion-associated circulatory overload in populations enriched with high-risk patients. Transfusion (2023)
Howard Bauchner, Mary M McDermott, Atul Janardhan Butte
Data Sharing Enters a New Era. Annals of internal medicine (2023)
Carla V Rodriguez-Watson, Anthony M Louder, Carly Kabelac, Christopher M Frederick, Natalie E Sheils, Elizabeth H Eldridge, Nancy D Lin, Benjamin D Pollock, Jennifer L Gatz, Shaun J Grannis, Rohit Vashisht, Kanwal Ghauri, Camille Knepper, Sandy Leonard, Peter J Embi, Garrett Jenkinson, Reyna J Klesh, Omai B Garner, Ayan Patel, Lisa Dahm, Aiden Barin, Dan M Cooper, Tom Andriola, Carrie L Byington, Bridgit O Crews, Atul Janardhan Butte, Jeff D Allen
Real-world performance of SARS-Cov-2 serology tests in the United States, 2020. PloS one 18 (2) (2023)
Sanil Patel, Njeri Z R Sparman, Douglas Arneson, Alexandra Alvarsson, Luís C Santos, Samuel J Duesman, Alessia Centonze, Ephraim Hathaway, In Sook Ahn, Graciel Diamante, Ingrid Cely, Chung Hwan Cho, Noble Kumar Talari, Abha K Rajbhandari, Leigh Goedeke, Peng Wang, Atul Janardhan Butte, Cédric Blanpain, Karthickeyan Chella Krishnan, Aldons J Lusis, Sarah A Stanley, Xia Yang, Prashant Rajbhandari
Mammary duct luminal epithelium controls adipocyte thermogenic programme. Nature (2023)
Brenda Y Miao, Douglas V Arneson, Michelle Wang, Atul Janardhan Butte
Open challenges in developing digital therapeutics in the United States. PLOS digital health 1 (1) (2022)
Zicheng Hu, Kattria van der Ploeg, Saborni Chakraborty, Prabhu S Arunachalam, Diego Mori, Karen Jacobson, Hector Bonilla, Julie Parsonnet, Jason R Andrews, Haley Hedlin, Lauren de la Parte, Kathleen Dantzler, Maureen Ty, Gene Tan, Catherine A Blish, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Atul Janardhan Butte, Upinder Singh, Bali Pulendran, Taia T Wang, Prasanna Jagannathan
Early immune responses have long-term associations with clinical, virologic, and immunologic outcomes in patients with COVID-19. Research square (2022)
Jaysón Davidson, Rohit Vashisht, Atul Janardhan Butte
From Genes to Geography, from Cells to Community, from Biomolecules to Behaviors: The Importance of Social Determinants of Health. Biomolecules 12 (10) (2022)
Zicheng Hu, Kattria van der Ploeg, Saborni Chakraborty, Prabhu S Arunachalam, Diego A M Mori, Karen B Jacobson, Hector Bonilla, Julie Parsonnet, Jason R Andrews, Marisa Holubar, Aruna Subramanian, Chaitan Khosla, Yvonne Maldonado, Haley Hedlin, Lauren de la Parte, Kathleen Press, Maureen Ty, Gene S Tan, Catherine Blish, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Atul Janardhan Butte, Upinder Singh, Bali Pulendran, Taia T Wang, Prasanna Jagannathan
Early immune markers of clinical, virological, and immunological outcomes in patients with COVID-19: a multi-omics study. eLife 11 (2022)
Daniel R Wong, Ziqi Tang, Nicholas C Mew, Sakshi Das, Justin Athey, Kirsty E McAleese, Julia K Kofler, Margaret E Flanagan, Ewa Borys, Charles L White, Atul Janardhan Butte, Brittany N Dugger, Michael J Keiser
Deep learning from multiple experts improves identification of amyloid neuropathologies. Acta neuropathologica communications 10 (1) (2022)
Brenda Y Miao, Douglas V Arneson, Michelle Wang, Atul Janardhan Butte
Open challenges in developing digital therapeutics in the United States. PLOS digital health 1 (1) (2022)
Charlotte A Nelson, Ana Uriarte Acuna, Amber M Paul, Ryan T Scott, Atul Janardhan Butte, Egle Cekanaviciute, Sergio E Baranzini, Sylvain V Costes
Knowledge Network Embedding of Transcriptomic Data from Spaceflown Mice Uncovers Signs and Symptoms Associated with Terrestrial Diseases. Life (Basel, Switzerland) 11 (1) (2021)
Vivek Ashok Rudrapatna, Benjamin Scott Glicksberg, Atul Janardhan Butte
Utility of routinely collected electronic health records data to support effectiveness evaluations in inflammatory bowel disease: a pilot study of tofacitinib. BMJ health & care informatics 28 (1) (2021)
Navchetan Kaur, Sanchita Bhattacharya, Atul Janardhan Butte
Big Data in Nephrology. Nature reviews. Nephrology 17 (10) (2021)
Thomas A Peterson, Thomas A Peterson, Suneil K Koliwad, Ayan Patel, Atul Janardhan Butte
Quantifying Variation in Treatment Utilization for Type 2 Diabetes Across Five Major University of California Health Systems. Diabetes care 44 (4) (2021)
Beau Norgeot, Giorgio Quer, Brett K Beaulieu-Jones, Ali Torkamani, Raquel Dias, Milena Gianfrancesco, Rima Arnaout, Isaac S Kohane, Suchi Saria, Eric J Topol, Ziad Obermeyer, Bin Yu, Atul Janardhan Butte
Minimum information about clinical artificial intelligence modeling: the MI-CLAIM checklist. Nature medicine 26 (9) (2020)
Vivek Ashok Rudrapatna, Benjamin Scott Glicksberg, Patrick Avila, Emily Harding-Theobald, Connie W Wang, Atul Janardhan Butte
Accuracy of medical billing data against the electronic health record in the measurement of colorectal cancer screening rates. BMJ open quality 9 (1) (2020)
Sang-Min Nam, Thomas A Peterson, Atul Janardhan Butte, Kyoung Yul Seo, Hyun Wook Han
Explanatory Model of Dry Eye Disease Using Health and Nutrition Examinations: Machine Learning and Network-Based Factor Analysis From a National Survey. JMIR medical informatics 8 (2) (2020)
Nisarg A Patel, Atul Janardhan Butte
Characteristics and challenges of the clinical pipeline of digital therapeutics. NPJ digital medicine 3 (1) (2020)
Zicheng Hu, Alice S Tang, Jaiveer Singh, Sanchita Bhattacharya, Atul Janardhan Butte
A robust and interpretable end-to-end deep learning model for cytometry data. Proceedings of the National Academy of Sciences of the United States of America 117 (35) (2020)
Sara Moron-Lopez, Sushama Telwatte, Indra Sarabia, Emilie Battivelli, Mauricio Montano, Amanda B Macedo, Dvir Aran, Atul Janardhan Butte, R Brad Jones, Alberto Bosque, Eric Verdin, Warner C Greene, Joseph K Wong, Steven A Yukl
Human splice factors contribute to latent HIV infection in primary cell models and blood CD4+ T cells from ART-treated individuals. PLoS pathogens 16 (11) (2020)
Beau Norgeot, Kathleen Muenzen, Thomas A Peterson, Xuancheng Fan, Benjamin Scott Glicksberg, Gundolf Schenk, Eugenia Rutenberg, Boris Oskotsky, Marina Sirota, Jinoos Yazdany, Gabriela Schmajuk, Dana Ludwig, Theodore Goldstein, Atul Janardhan Butte
Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes. NPJ digital medicine 3 (2020)
Douglas V Arneson, Matthew Elliott, Arman Mosenia, Boris Oskotsky, Samuel Solodar, Rohit Vashisht, Travis Zack, Paul Bleicher, Atul Janardhan Butte, Vivek Ashok Rudrapatna
CovidCounties is an interactive real time tracker of the COVID19 pandemic at the level of US counties. Scientific data 7 (1) (2020)
Sophia Miryam Schüssler-Fiorenza Rose, Kevin Contrepois, Kegan J Moneghetti, Wenyu Zhou, Tejaswini Mishra, Samson J Mataraso, Orit Dagan-Rosenfeld, Ariel B Ganz, Jessilyn Dunn, Daniel Hornburg, Shannon Rego, Dalia Perelman, Sara Ahadi, M Reza Sailani, Yanjiao Zhou, Shana R Leopold, Jieming Chen, Melanie Ashland, Jeffrey W Christle, Monika Avina, Patricia Limcaoco, Camilo Ruiz, Marilyn Tan, Atul Janardhan Butte, George M Weinstock, Theodore F Robles, Erica Sodergren, Tracey L McLaughlin, Francois Haddad, Michael Paul Snyder
A longitudinal big data approach for precision health. Nature medicine 25 (5) (2019)
Beau Norgeot, Benjamin Scott Glicksberg, Atul Janardhan Butte
A call for deep-learning healthcare. Nature medicine 25 (1) (2019)
Vivek A Rudrapatna, Atul Janardhan Butte
Open data informatics and data repurposing for IBD. Nature reviews. Gastroenterology & hepatology 15 (12) (2019)
Katherine Yu, Bin Chen, Dvir Aran, J Charalel, C Yau, D M Wolf, Laura van 't Veer, Atul Janardhan Butte, T Goldstein, M Sirota
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types. Nature communications 10 (1) (2019)
Hyojung Paik, Matthew J Kan, Nadav Rappoport, Dexter Hadley, Marina Sirota, Bin Chen, Udi Manber, Seong Beom Cho, Atul Janardhan Butte
Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia. Scientific data 6 (1) (2019)
Charlotte A Nelson, Atul Janardhan Butte, Sergio E Baranzini
Integrating biomedical research and electronic health records to create knowledge-based biologically meaningful machine-readable embeddings. Nature communications 10 (1) (2019)
Daniel R Wong, Sanchita Bhattacharya, Atul Janardhan Butte
Prototype of running clinical trials in an untrustworthy environment using blockchain. Nature communications 10 (1) (2019)
Dvir Aran, Agnieszka P Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu, Suzanna Chak, Ram P Naikawadi, Paul J Wolters, Adam R Abate, Atul Janardhan Butte, Mallar Bhattacharya
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. Nature immunology 20 (2) (2019)
Nadav Rappoport, Jonathan Toung, Dexter Hadley, Ronald J Wong, Kazumichi Fujioka, Jason Reuter, Charles W Abbott, Sam S Oh, Donglei Hu, Celeste Eng, Scott Huntsman, Dale L Bodian, John E Niederhuber, Xiumei Hong, Ge Zhang, Weronika Sikora-Wohfeld, Christopher R Gignoux, Hui Wang, John Oehlert, Laura L Jelliffe-Pawlowski, Jeffrey B Gould, Gary L Darmstadt, Xiaobin Wang, Carlos D Bustamante, Michael P Snyder, Elad Ziv, Nikolaos A Patsopoulos, Louis J Muglia, Esteban Burchard, Gary M Shaw, Hugh M O'Brodovich, David K Stevenson, Atul Janardhan Butte, Marina Sirota
A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth. Scientific reports 8 (1) (2018)
Sanchita Bhattacharya, Patrick Dunn, Cristel G Thomas, Barry Smith, Henry Schaefer, Jieming Chen, Zicheng Hu, Kelly A Zalocusky, Ravi D Shankar, Shai S Shen-Orr, Elizabeth Thomson, Jeffrey Wiser, Atul Janardhan Butte
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research. Scientific data 5 (2018)
Marina Sirota, Cristel G Thomas, Rebecca Liu, Maya Zuhl, Payal Banerjee, Ronald J Wong, Cecele C Quaintance, Rita Leite, Jessica Chubiz, Rebecca Anderson, Joanne Chappell, Mara Kim, William Grobman, Ge Zhang, Antonis Rokas, Sarah K England, Samuel Parry, Gary M Shaw, Joe Leigh Simpson, Elizabeth Thomson, Atul Janardhan Butte, null null
Enabling precision medicine in neonatology, an integrated repository for preterm birth research. Scientific data 5 (2018)
Atul Janardhan Butte
Big data opens a window onto wellness. Nature biotechnology 35 (8) (2018)
Dvir Aran, Roman Camarda, Justin Odegaard, Hyojung Paik, Boris Oskotsky, Gregor Krings, Andrei Goga, Marina Sirota, Atul Janardhan Butte
Comprehensive analysis of normal adjacent to tumor transcriptomes. Nature communications 8 (1) (2017)
Bin Chen, Li Ma, Hyojung Paik, Marina Sirota, Wei Wei, Mei-Sze Chua, Samuel So, Atul Janardhan Butte
Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets. Nature communications 8 (2017)
Dexter Hadley, James Pan, Osama El-Sayed, Jihad Aljabban, Imad Aljabban, Tej D Azad, Mohamad O Hadied, Shuaib Raza, Benjamin Abhishek Rayikanti, Bin Chen, Hyojung Paik, Dvir Aran, Jordan Spatz, Daniel Scott Himmelstein, Maryam Panahiazar, Sanchita Bhattacharya, Marina Sirota, Mark A Musen, Atul Janardhan Butte
Precision annotation of digital samples in NCBI's gene expression omnibus. Scientific data 4 (2017)
Dvir Aran, Zicheng Hu, Atul Janardhan Butte
xCell: digitally portraying the tissue cellular heterogeneity landscape. Genome biology 18 (1) (2017)
Atul Janardhan Butte
It takes a genome to understand a village: Population scale precision medicine. Proceedings of the National Academy of Sciences of the United States of America 113 (44) (2016)

Atul Janardhan Butte.css-eqlu8i{font-size:small;padding-left:4px;} (A J Butte, Atul J Butte, Atul Butte)

Publication Activity (10 Years)

Top Topics

Top Venues

Atul Janardhan Butte (A J Butte, Atul J Butte, Atul Butte)