Antonis Rokas (A Rokas)

Loop profile Ciência ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 198

Top Venues

bioRxiv : the preprint server for biology

G3 (Bethesda, Md.)

Proceedings of the National Academy of Sciences of the United States of America

Microbiology spectrum

Vanderbilt University

University of Edinburgh (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Vanderbilt University

United States

Professor :: Department of Biological Sciences

Education History

University of Edinburgh

United Kingdom

PHD :: Institute of Cell, Animal and Population Biology

University of Crete

Greece

BSC :: Department of Biology

Publications

Olivia Riedling, Allison S Walker, Antonis Rokas
Predicting fungal secondary metabolite activity from biosynthetic gene cluster data using machine learning. Microbiology spectrum 12 (2) (2024)
David C Rinker, Thomas J C Sauters, Karin Steffen, Adiyantara Gumilang, Huzefa A Raja, Manuel Rangel-Grimaldo, Camila Figueiredo Pinzan, Patrícia Alves de Castro, Thaila Fernanda Dos Reis, Endrews Delbaje, Jos Houbraken, Gustavo Henrique Goldman, Nicholas H Oberlies, Antonis Rokas
Strain heterogeneity in a non-pathogenic fungus highlights factors contributing to virulence. bioRxiv : the preprint server for biology (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Mei Tao, Jiani Chen, Chunlai Cui, Yandong Xu, Jingxiu Xu, Zheyi Shi, Jiaqi Yun, Junwei Zhang, Guo-Zheng Ou, Chao Liu, Yun Chen, Zeng-Rong Zhu, Ronghui Pan, Suhong Xu, Xue-Xin Chen, Antonis Rokas, Yang Zhao, Sibao Wang, Jian-Hua Huang, Xing-Xing Shen
Identification of a longevity gene through evolutionary rate covariation of insect mito-nuclear genomes. Nature aging 4 (8) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
E Anne Hatmaker, Amelia E Barber, Milton T Drott, Thomas J C Sauters, Ana-Alastruey Izquierdo, Dea Garcia-Hermoso, Oliver Kurzai, Antonis Rokas
Pathogenicity is associated with population structure in a fungal pathogen of humans. bioRxiv : the preprint server for biology (2024)
Johnathan G Crandall, Xiao-Fan Zhou, Antonis Rokas, Chris Todd Hittinger
Specialization restricts the evolutionary paths available to yeast sugar transporters. bioRxiv : the preprint server for biology (2024)
Jacob Lucas Steenwyk, Charu Balamurugan, Huzefa A Raja, Carla Gonçalves, Ningxiao Li, Frank Martin, Judith Berman, Nicholas H Oberliels, John G Gibbons, Gustavo Henrique Goldman, David M Geiser, Jos Houbraken, David S Hibbett, Antonis Rokas
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus . Microbiology spectrum 12 (4) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Camila Figueiredo Pinzan, Clara Valero, Patrícia Alves de Castro, Jefferson Luiz da Silva, Kayleigh Earle, Hong Liu, Maria Augusta Crivelente Horta, Olaf Kniemeyer, Thomas Krueger, Annica Pschibul, Derya Nur Cömert, Thorsten Heinekamp, Axel A Brakhage, Jacob L Steenwyk, Matthew E Mead, Nico Hermsdorf, Scott G Filler, Nathalia Gonsales da Rosa-Garzon, Endrews Delbaje, Michael J Bromley, Hamilton Cabral, Camila Diehl, Claudia B Angeli, Giuseppe Palmisano, Ashraf S Ibrahim, David C Rinker, Thomas J C Sauters, Karin Steffen, Adiyantara Gumilang, Antonis Rokas, Sara Gago, Thaila Fernanda Dos Reis, Gustavo Henrique Goldman
Aspergillus fumigatus conidial surface-associated proteome reveals factors for fungal evasion and host immunity modulation. Nature microbiology (2024)
Chao Liu, Xiao-Fan Zhou, Yuanning Li, Chris Todd Hittinger, Ronghui Pan, Jinyan Huang, Xue-Xin Chen, Antonis Rokas, Yun Chen, Xing-Xing Shen
The influence of the number of tree searches on maximum likelihood inference in phylogenomics. Systematic biology (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus . bioRxiv : the preprint server for biology (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. G3 (Bethesda, Md.) 14 (7) (2024)
David C Rinker, Thomas J C Sauters, Karin Steffen, Adiyantara Gumilang, Huzefa A Raja, Manuel Rangel-Grimaldo, Camila Figueiredo Pinzan, Patrícia Alves de Castro, Thaila Fernanda Dos Reis, Endrews Delbaje, Jos Houbraken, Gustavo Henrique Goldman, Nicholas H Oberliels, Antonis Rokas
Strain heterogeneity in a non-pathogenic Aspergillus fungus highlights factors associated with virulence. Communications biology 7 (1) (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. bioRxiv : the preprint server for biology (2024)
Jacob Lucas Steenwyk, Charu Balamurugan, Huzefa A Raja, Carla Gonçalves, Ningxiao Li, Frank Martin, Judith Berman, Nicholas H Oberliels, John G Gibbons, Gustavo Henrique Goldman, David M Geiser, Jos Houbraken, David S Hibbett, Antonis Rokas
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus . Microbiology spectrum 12 (4) (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Charu Balamurugan, Jacob Lucas Steenwyk, Gustavo Henrique Goldman, Antonis Rokas
The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi. G3 (Bethesda, Md.) 14 (5) (2024)
Jacob Lucas Steenwyk, Charu Balamurugan, Huzefa A Raja, Carla Gonçalves, Ningxiao Li, Frank Martin, Judith Berman, Nicholas H Oberliels, John G Gibbons, Gustavo Henrique Goldman, David M Geiser, Jos Houbraken, David S Hibbett, Antonis Rokas
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus . Microbiology spectrum 12 (4) (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Jacob Lucas Steenwyk, Charu Balamurugan, Huzefa A Raja, Carla Gonçalves, Ningxiao Li, Frank Martin, Judith Berman, Nicholas H Oberliels, John G Gibbons, Gustavo Henrique Goldman, David M Geiser, Jos Houbraken, David S Hibbett, Antonis Rokas
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus . Microbiology spectrum (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of non-coding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. G3 (Bethesda, Md.) (2024)
Camila Figueiredo Pinzan, Clara Valero, Patrícia Alves de Castro, Jefferson Luiz da Silva, Kayleigh Earle, Hong Liu, Maria Augusta Crivelente Horta, Olaf Kniemeyer, Thomas Krueger, Annica Pschibul, Derya Nur Cömert, Thorsten Heinekamp, Axel A Brakhage, Jacob L Steenwyk, Matthew E Mead, Nico Hermsdorf, Scott G Filler, Nathalia Gonsales da Rosa-Garzon, Endrews Delbaje, Michael J Bromley, Hamilton Cabral, Camila Diehl, Claudia B Angeli, Giuseppe Palmisano, Ashraf S Ibrahim, David C Rinker, Thomas J C Sauters, Karin Steffen, Adiyantara Gumilang, Antonis Rokas, Sara Gago, Thaila Fernanda Dos Reis, Gustavo Henrique Goldman
Aspergillus fumigatus conidial surface-associated proteome reveals factors for fungal evasion and host immunity modulation. Nature microbiology (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus . bioRxiv : the preprint server for biology (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Olivia Riedling, Allison S Walker, Antonis Rokas
Predicting fungal secondary metabolite activity from biosynthetic gene cluster data using machine learning. Microbiology spectrum (2024)
E Anne Hatmaker, Amelia E Barber, Milton T Drott, Thomas J C Sauters, Ana-Alastruey Izquierdo, Dea Garcia-Hermoso, Oliver Kurzai, Antonis Rokas
Pathogenicity is associated with population structure in a fungal pathogen of humans. bioRxiv : the preprint server for biology (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Robert E Jones, Alexander K Tice, Marek Eliáš, Laura Eme, Martin Kolísko, Serafim Nenarokov, Tomáš Pánek, Antonis Rokas, Eric D Salomaki, Jürgen F H Strassert, Xing-Xing Shen, David Zihala, Matthew W Brown
Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher. Current protocols 4 (1) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus . bioRxiv : the preprint server for biology (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Charu Balamurugan, Jacob Lucas Steenwyk, Gustavo Henrique Goldman, Antonis Rokas
The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi. G3 (Bethesda, Md.) (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. G3 (Bethesda, Md.) 14 (7) (2024)
Ana Pontes, Marie-Claire Harrison, Antonis Rokas, Carla Gonçalves
Convergent reductive evolution in bee-associated lactic acid bacteria. bioRxiv : the preprint server for biology (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
Jacob Lucas Steenwyk, Charu Balamurugan, Huzefa A Raja, Carla Gonçalves, Ningxiao Li, Frank Martin, Judith Berman, Nicholas H Oberliels, John G Gibbons, Gustavo Henrique Goldman, David M Geiser, Jos Houbraken, David S Hibbett, Antonis Rokas
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus . Microbiology spectrum 12 (4) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Johnathan G Crandall, Xiao-Fan Zhou, Antonis Rokas, Chris Todd Hittinger
Specialization restricts the evolutionary paths available to yeast sugar transporters. bioRxiv : the preprint server for biology (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and evolutionary integration of a fungal gene with a bacterial operon. Molecular biology and evolution (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. G3 (Bethesda, Md.) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus . bioRxiv : the preprint server for biology (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and evolutionary integration of a fungal gene with a bacterial operon. Molecular biology and evolution (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
David C Rinker, Thomas J C Sauters, Karin Steffen, Adiyantara Gumilang, Huzefa A Raja, Manuel Rangel-Grimaldo, Camila Figueiredo Pinzan, Patrícia Alves de Castro, Thaila Fernanda Dos Reis, Endrews Delbaje, Jos Houbraken, Gustavo Henrique Goldman, Nicholas H Oberlies, Antonis Rokas
Strain heterogeneity in a non-pathogenic fungus highlights factors contributing to virulence. bioRxiv : the preprint server for biology (2024)
Hongyue Liu, Jacob L Steenwyk, Xiaofan Zhou, Darrin T Schultz, Kevin M Kocot, Xing-Xing Shen, Antonis Rokas, Yuanning Li
A taxon-rich and genome-scale phylogeny of Opisthokonta. PLoS biology 22 (9) (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. G3 (Bethesda, Md.) (2024)
Bo Feng, Yonglin Li, Hongyue Liu, Jacob Lucas Steenwyk, Kyle T David, Xiaolin Tian, Biyang Xu, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Antonis Rokas, Xiao-Fan Zhou, Yuanning Li
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage. bioRxiv : the preprint server for biology (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. G3 (Bethesda, Md.) 14 (7) (2024)
Charu Balamurugan, Jacob Lucas Steenwyk, Gustavo Henrique Goldman, Antonis Rokas
The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi. G3 (Bethesda, Md.) 14 (5) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Johnathan G Crandall, Xiao-Fan Zhou, Antonis Rokas, Chris Todd Hittinger
Specialization restricts the evolutionary paths available to yeast sugar transporters. bioRxiv : the preprint server for biology (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Charu Balamurugan, Jacob Lucas Steenwyk, Gustavo Henrique Goldman, Antonis Rokas
The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi. G3 (Bethesda, Md.) 14 (5) (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Olivia Riedling, Allison S Walker, Antonis Rokas
Predicting fungal secondary metabolite activity from biosynthetic gene cluster data using machine learning. Microbiology spectrum (2024)
Charu Balamurugan, Jacob Lucas Steenwyk, Gustavo Henrique Goldman, Antonis Rokas
The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi. G3 (Bethesda, Md.) (2024)
Charu Balamurugan, Jacob Lucas Steenwyk, Gustavo Henrique Goldman, Antonis Rokas
The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi. G3 (Bethesda, Md.) (2024)
Charu Balamurugan, Jacob Lucas Steenwyk, Gustavo Henrique Goldman, Antonis Rokas
The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi. G3 (Bethesda, Md.) 14 (5) (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus . bioRxiv : the preprint server for biology (2024)
Jacob Lucas Steenwyk, Charu Balamurugan, Huzefa A Raja, Carla Gonçalves, Ningxiao Li, Frank Martin, Judith Berman, Nicholas H Oberliels, John G Gibbons, Gustavo Henrique Goldman, David M Geiser, Jos Houbraken, David S Hibbett, Antonis Rokas
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus . Microbiology spectrum 12 (4) (2024)
Ana Pontes, Marie-Claire Harrison, Antonis Rokas, Carla Gonçalves
Convergent reductive evolution in bee-associated lactic acid bacteria. bioRxiv : the preprint server for biology (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus . bioRxiv : the preprint server for biology (2024)
Mei Tao, Jiani Chen, Chunlai Cui, Yandong Xu, Jingxiu Xu, Zheyi Shi, Jiaqi Yun, Junwei Zhang, Guo-Zheng Ou, Chao Liu, Yun Chen, Zeng-Rong Zhu, Ronghui Pan, Suhong Xu, Xue-Xin Chen, Antonis Rokas, Yang Zhao, Sibao Wang, Jian-Hua Huang, Xing-Xing Shen
Identification of a longevity gene through evolutionary rate covariation of insect mito-nuclear genomes. Nature aging (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Robert E Jones, Alexander K Tice, Marek Eliáš, Laura Eme, Martin Kolísko, Serafim Nenarokov, Tomáš Pánek, Antonis Rokas, Eric D Salomaki, Jürgen F H Strassert, Xing-Xing Shen, David Zihala, Matthew W Brown
Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher. Current protocols 4 (1) (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Alec Brown, Jacob Lucas Steenwyk, Antonis Rokas
Genome-wide patterns of non-coding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. G3 (Bethesda, Md.) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Olivia Riedling, Allison S Walker, Antonis Rokas
Predicting fungal secondary metabolite activity from biosynthetic gene cluster data using machine learning. Microbiology spectrum 12 (2) (2024)
Bo Feng, Yonglin Li, Hongyue Liu, Jacob Lucas Steenwyk, Kyle T David, Xiaolin Tian, Biyang Xu, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Antonis Rokas, Xiao-Fan Zhou, Yuanning Li
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage. bioRxiv : the preprint server for biology (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Olivia Riedling, Allison S Walker, Antonis Rokas
Predicting fungal secondary metabolite activity from biosynthetic gene cluster data using machine learning. Microbiology spectrum 12 (2) (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. bioRxiv : the preprint server for biology (2024)
Matthew E Mead, Patrícia Alves de Castro, Jacob Lucas Steenwyk, Jean-Pierre Gangneux, Martin Hoenigl, Juergen Prattes, Riina Rautemaa-Richardson, Hélène Guegan, Caroline B Moore, Cornelia Lass-Flörl, Florian Reizine, Clara Valero, Norman van van Rhijn, Michael J Bromley, Antonis Rokas, Gustavo Henrique Goldman, Sara Gago, null null
COVID-19-Associated Pulmonary Aspergillosis Isolates Are Genomically Diverse but Similar to Each Other in Their Responses to Infection-Relevant Stresses. Microbiology spectrum (2023)
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason C Slot, Yuichi Sakamoto, Jacob Lucas Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco Javier Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen W Hughes, Juan L Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris A Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt M LaButti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel T Martínez, Yang Xiao, John G Gibbons, Kazuhisa Terashima, Igor V Grigoriev, David S Hibbett
A global phylogenomic analysis of the shiitake genus Lentinula . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Abin Abraham, Abigail L Labella, Mary Lauren Benton, Antonis Rokas, Anthony Capra
GSEL: a fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic regions. Bioinformatics (Oxford, England) 39 (1) (2023)
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason C Slot, Yuichi Sakamoto, Jacob Lucas Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco Javier Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen W Hughes, Juan L Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris A Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt M LaButti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel T Martínez, Yang Xiao, John G Gibbons, Kazuhisa Terashima, Igor V Grigoriev, David S Hibbett
A global phylogenomic analysis of the shiitake genus Lentinula . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Abin Abraham, Abigail L Labella, Mary Lauren Benton, Antonis Rokas, Anthony Capra
GSEL: a fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic regions. Bioinformatics (Oxford, England) 39 (1) (2023)
E Anne Hatmaker, Jonathan E Schmitz, Antonis Rokas
Draft genomes of Aspergillus nomiae and Aspergillus tamarii isolates from human eye infections. Microbiology resource announcements (2023)
Abin Abraham, Abigail L Labella, Mary Lauren Benton, Antonis Rokas, Anthony Capra
GSEL: a fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic regions. Bioinformatics (Oxford, England) 39 (1) (2023)
Jacob Lucas Steenwyk, Yuanning Li, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas
Incongruence in the phylogenomics era. Nature reviews. Genetics (2023)
Pol Sole Navais, Christopher Flatley, Valgerdur Steinthorsdottir, Marc Vaudel, Julius Juodakis, Jing Chen, Triin Laisk, Abigail Leavitt LaBella, David Westergaard, Jonas Bacelis, Ben Michael Brumpton, Line Skotte, Maria C Borges, Øyvind Helgeland, Anubha Mahajan, Matthias Wielscher, Frederick T J Lin, Catherine Briggs, Carol A Wang, Gunn-Helen Moen, Robin N Beaumont, Jonathan P Bradfield, Abin Abraham, Gudmar Thorleifsson, Maiken E Gabrielsen, Sisse Rye Ostrowski, Dominika Modzelewska, Ellen A Nohr, Elina Hyppӧnen, Amit Srivastava, Octavious Talbot, Catherine Allard, Scott M Williams, Ramkumar Menon, Beverley M Shields, Gardar Sveinbjörnsson, Huan Xu, Mads Melbye, William L Lowe, Luigi Bouchard, Emily Oken, Ole Birger Vesterager Pedersen, Daníel F Guðbjartsson, Christian Erikstrup, Erik Sørensen, null null, null null, null null, Rolv T Lie, Kari Teramo, Mikko Hallman, Thorhildur Juliusdottir, Hakon Hakonarson, Henrik Ullum, Andrew T Hattersley, Line Sletner, Mario Merialdi, Sheryl L Rifas-Shiman, Thora Steingrimsdottir, Denise M Scholtens, Christine Power, Jane West, Mette Nygaard, John A Capra, Anne Heidi Skogholt, Per Magnus, Ole Andreas Andreassen, Unnur Thorsteinsdottir, Struan F A Grant, Elisabeth Qvigstad, Craig E Pennell, Marie-France Hivert, M Geoffrey Hayes, Marjo-Riitta Jarvelin, Mark I McCarthy, Deborah A Lawlor, Henriette Svarre Nielsen, Reedik Mägi, Antonis Rokas, Kristian Hveem, Kári Stefánsson, Bjarke Feenstra, Pal Rasmus Njolstad, Louis J Muglia, Rachel M Freathy, Stefan E Johansson, Ge Zhang, Bo Jacobson
Author Correction: Genetic effects on the timing of parturition and links to fetal birth weight. Nature genetics (2023)
Abin Abraham, Abigail L Labella, Mary Lauren Benton, Antonis Rokas, Anthony Capra
GSEL: a fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic regions. Bioinformatics (Oxford, England) 39 (1) (2023)
Katrina Ngo, Tristen H Gittens, David I Gonzalez, E Anne Hatmaker, Simcha Plotkin, Mason Engle, Geofrey A Friedman, Melissa Goldin, Remington E Hoerr, Brandt F Eichman, Antonis Rokas, Mary Lauren Benton, Katherine L Friedman
A comprehensive map of hotspots of de novo telomere addition in Saccharomyces cerevisiae . bioRxiv : the preprint server for biology (2023)
Jacob Lucas Steenwyk, Antonis Rokas
The dawn of relaxed phylogenetics. PLoS biology 21 (1) (2023)
Pol Sole Navais, Christopher Flatley, Valgerdur Steinthorsdottir, Marc Vaudel, Julius Juodakis, Jing Chen, Triin Laisk, Abigail Leavitt LaBella, David Westergaard, Jonas Bacelis, Ben Michael Brumpton, Line Skotte, Maria C Borges, Øyvind Helgeland, Anubha Mahajan, Matthias Wielscher, Frederick T J Lin, Catherine Briggs, Carol A Wang, Gunn-Helen Moen, Robin N Beaumont, Jonathan P Bradfield, Abin Abraham, Gudmar Thorleifsson, Maiken E Gabrielsen, Sisse Rye Ostrowski, Dominika Modzelewska, Ellen A Nohr, Elina Hyppӧnen, Amit Srivastava, Octavious Talbot, Catherine Allard, Scott M Williams, Ramkumar Menon, Beverley M Shields, Gardar Sveinbjörnsson, Huan Xu, Mads Melbye, William L Lowe, Luigi Bouchard, Emily Oken, Ole Birger Vesterager Pedersen, Daníel F Guðbjartsson, Christian Erikstrup, Erik Sørensen, null null, null null, null null, Rolv T Lie, Kari Teramo, Mikko Hallman, Thorhildur Juliusdottir, Hakon Hakonarson, Henrik Ullum, Andrew T Hattersley, Line Sletner, Mario Merialdi, Sheryl L Rifas-Shiman, Thora Steingrimsdottir, Denise M Scholtens, Christine Power, Jane West, Mette Nygaard, John A Capra, Anne Heidi Skogholt, Per Magnus, Ole Andreas Andreassen, Unnur Thorsteinsdottir, Struan F A Grant, Elisabeth Qvigstad, Craig E Pennell, Marie-France Hivert, M Geoffrey Hayes, Marjo-Riitta Jarvelin, Mark I McCarthy, Deborah A Lawlor, Henriette Svarre Nielsen, Reedik Mägi, Antonis Rokas, Kristian Hveem, Kári Stefánsson, Bjarke Feenstra, Pal Rasmus Njolstad, Louis J Muglia, Rachel M Freathy, Stefan E Johansson, Ge Zhang, Bo Jacobson
Genetic effects on the timing of parturition and links to fetal birth weight. Nature genetics (2023)
Katrina Ngo, Tristen H Gittens, David I Gonzalez, E Anne Hatmaker, Simcha Plotkin, Mason Engle, Geofrey A Friedman, Melissa Goldin, Remington E Hoerr, Brandt F Eichman, Antonis Rokas, Mary Lauren Benton, Katherine L Friedman
A comprehensive map of hotspots of de novo telomere addition in Saccharomyces cerevisiae . bioRxiv : the preprint server for biology (2023)
Clara Valero, Camila Figueiredo Pinzan, Patrícia Alves de Castro, Norman van Rhijn, Kayleigh Earle, Hong Liu, Maria Augusta Crivelente Horta, Olaf Kniemeyer, Thomas Krüger, Annica Pschibul, Derya Nur Coemert, Thorsten Heinekamp, Axel A Brakhage, Jacob L Steenwyk, Matthew E Mead, Antonis Rokas, Scott G Filler, Nathalia Gonsales da Rosa-Garzon, Hamilton Cabral, Endrews Deljabe, Michael J Bromley, Claudia B Angeli, Giuseppe Palmisano, Ashraf S Ibrahim, Sara Gago, Thaila F Dos Reis, Gustavo Henrique Goldman
A phylogenetic approach to explore the Aspergillus fumigatus conidial surface-associated proteome and its role in pathogenesis. bioRxiv : the preprint server for biology (2023)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research (2023)
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason C Slot, Yuichi Sakamoto, Jacob Lucas Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco Javier Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen W Hughes, Juan L Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris A Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt M LaButti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel T Martínez, Yang Xiao, John G Gibbons, Kazuhisa Terashima, Igor V Grigoriev, David S Hibbett
A global phylogenomic analysis of the shiitake genus Lentinula . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Jacob L Steenwyk, Sonja Knowles, Rafael W Bastos, Charu Balamurugan, David Rinker, Matthew E Mead, Christopher D Roberts, Huzefa A Raja, Yuanning Li, Ana Cristina Colabardini, Patrícia Alves de Castro, Thaila Fernanda Dos Reis, David Canóvas, Rafael Luperini Sanchez, Katrien Lagrou, Egídio Torrado, Fernando Rodrigues, Nicholas H Oberlies, Xiao-Fan Zhou, Gustavo H Goldman, Antonis Rokas
Evolutionary origin, population diversity, and diagnostics for a cryptic hybrid pathogen. bioRxiv : the preprint server for biology (2023)
Jacob Lucas Steenwyk, Antonis Rokas
The dawn of relaxed phylogenetics. PLoS biology 21 (1) (2023)
Thodoris Danis, Antonis Rokas
The evolution of gestation length in eutherian mammals. bioRxiv : the preprint server for biology (2023)

Antonis Rokas.css-eqlu8i{font-size:small;padding-left:4px;} (A Rokas)

Publication Activity (10 Years)

Top Topics

Top Venues

Antonis Rokas (A Rokas)