Benjamin J Woodcroft (Ben J Woodcroft)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 24

Top Topics

Anaerobic Digestion

Machine Learning

Top Venues

Nature microbiology

Nature communications

ISME communications

This page only lists publications with an associated author ORCID identifier.

Publications

Bridget B McGivern, Dylan R Cronin, Jared B Ellenbogen, Mikayla A Borton, Eleanor L Knutson, Viviana Freire-Zapata, John A Bouranis, Lukas Bernhardt, Alma I Hernandez, Rory M Flynn, Reed Woyda, Alexandra B Cory, Rachel M Wilson, Jeffrey P Chanton, Benjamin J Woodcroft, Jessica Gilman Ernakovich, Malak M Tfaily, Matthew B Sullivan, Gene W Tyson, Virginia I Rich, Ann E Hagerman, Kelly C Wrighton
Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle. Nature microbiology 9 (6) (2024)
Marie Charlotte Schoelmerich, Lynn Ly, Jacob West-Roberts, Ling-Dong Shi, Cong Shen, Nikhil S Malvankar, Najwa Taib, Simonetta Gribaldo, Benjamin J Woodcroft, Christopher W Schadt, Basem Al-Shayeb, Xiaoguang Dai, Christopher Mozsary, Scott Hickey, Christine He, John Beaulaurier, Sissel Juul, Rohan Sachdeva, Jillian F Banfield
Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires. Nature communications 15 (1) (2024)
Marie Charlotte Schoelmerich, Lynn Ly, Jacob West-Roberts, Ling-Dong Shi, Cong Shen, Nikhil S Malvankar, Najwa Taib, Simonetta Gribaldo, Benjamin J Woodcroft, Christopher W Schadt, Basem Al-Shayeb, Xiaoguang Dai, Christopher Mozsary, Scott Hickey, Christine He, John Beaulaurier, Sissel Juul, Rohan Sachdeva, Jillian F Banfield
Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires. Nature communications 15 (1) (2024)
Marie Charlotte Schoelmerich, Lynn Ly, Jacob West-Roberts, Ling-Dong Shi, Cong Shen, Nikhil S Malvankar, Najwa Taib, Simonetta Gribaldo, Benjamin J Woodcroft, Christopher W Schadt, Basem Al-Shayeb, Xiaoguang Dai, Christopher Mozsary, Scott Hickey, Christine He, John Beaulaurier, Sissel Juul, Rohan Sachdeva, Jillian F Banfield
Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires. Nature communications 15 (1) (2024)
Bridget B McGivern, Dylan R Cronin, Jared B Ellenbogen, Mikayla A Borton, Eleanor L Knutson, Viviana Freire-Zapata, John A Bouranis, Lukas Bernhardt, Alma I Hernandez, Rory M Flynn, Reed Woyda, Alexandra B Cory, Rachel M Wilson, Jeffrey P Chanton, Benjamin J Woodcroft, Jessica Gilman Ernakovich, Malak M Tfaily, Matthew B Sullivan, Gene W Tyson, Virginia I Rich, Ann E Hagerman, Kelly C Wrighton
Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle. Nature microbiology 9 (6) (2024)
Bridget B McGivern, Dylan R Cronin, Jared B Ellenbogen, Mikayla A Borton, Eleanor L Knutson, Viviana Freire-Zapata, John A Bouranis, Lukas Bernhardt, Alma I Hernandez, Rory M Flynn, Reed Woyda, Alexandra B Cory, Rachel M Wilson, Jeffrey P Chanton, Benjamin J Woodcroft, Jessica Gilman Ernakovich, Malak M Tfaily, Matthew B Sullivan, Gene W Tyson, Virginia I Rich, Ann E Hagerman, Kelly C Wrighton
Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle. Nature microbiology 9 (6) (2024)
Alex Chklovski, Donovan H Parks, Benjamin J Woodcroft, Gene W Tyson
Author Correction: CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nature methods (2024)
Bridget B McGivern, Dylan R Cronin, Jared B Ellenbogen, Mikayla A Borton, Eleanor L Knutson, Viviana Freire-Zapata, John A Bouranis, Lukas Bernhardt, Alma I Hernandez, Rory M Flynn, Reed Woyda, Alexandra B Cory, Rachel M Wilson, Jeffrey P Chanton, Benjamin J Woodcroft, Jessica Gilman Ernakovich, Malak M Tfaily, Matthew B Sullivan, Gene W Tyson, Virginia I Rich, Ann E Hagerman, Kelly C Wrighton
Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle. Nature microbiology 9 (6) (2024)
Bridget B McGivern, Dylan R Cronin, Jared B Ellenbogen, Mikayla A Borton, Eleanor L Knutson, Viviana Freire-Zapata, John A Bouranis, Lukas Bernhardt, Alma I Hernandez, Rory M Flynn, Reed Woyda, Alexandra B Cory, Rachel M Wilson, Jeffrey P Chanton, Benjamin J Woodcroft, Jessica Gilman Ernakovich, Malak M Tfaily, Matthew B Sullivan, Gene W Tyson, Virginia I Rich, Ann E Hagerman, Kelly C Wrighton
Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle. Nature microbiology (2024)
Simon Jon McIlroy, Andy O Leu, Xueqin Zhang, Rhys Newell, Benjamin J Woodcroft, Zhiguo Yuan, Shihu Hu, Gene W Tyson
Anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens' has a pleomorphic life cycle. Nature microbiology 8 (2) (2023)
Simon Jon McIlroy, Andy O Leu, Xueqin Zhang, Rhys Newell, Benjamin J Woodcroft, Zhiguo Yuan, Shihu Hu, Gene W Tyson
Anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens' has a pleomorphic life cycle. Nature microbiology 8 (2) (2023)
Alex Chklovski, Donovan H Parks, Benjamin J Woodcroft, Gene W Tyson
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nature methods (2023)
Simon Jon McIlroy, Andy O Leu, Xueqin Zhang, Rhys Newell, Benjamin J Woodcroft, Zhiguo Yuan, Shihu Hu, Gene W Tyson
Anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens' has a pleomorphic life cycle. Nature microbiology (2023)
Simon Jon McIlroy, Andy O Leu, Xueqin Zhang, Rhys Newell, Benjamin J Woodcroft, Zhiguo Yuan, Shihu Hu, Gene W Tyson
Anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens' has a pleomorphic life cycle. Nature microbiology 8 (2) (2023)
Jialin Hou, Yinzhao Wang, Pengfei Zhu, Na Yang, Lewen Liang, Tiantian Yu, Mingyang Niu, Kurt O Konhauser, Benjamin J Woodcroft, Feng-Ping Wang
Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment. Science advances 9 (27) (2023)
Simon Jon McIlroy, Andy O Leu, Xueqin Zhang, Rhys Newell, Benjamin J Woodcroft, Zhiguo Yuan, Shihu Hu, Gene W Tyson
Anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens' has a pleomorphic life cycle. Nature microbiology 8 (2) (2023)
Mikayla A Borton, Bridget B McGivern, Kathryn R Willi, Benjamin J Woodcroft, Annika C Mosier, Ted Bambakidis, Derick M Singleton, Filipe Liu, Janaka N Edirisinghe, José P Faria, Ikaia Leleiwi, Rebecca A Daly, Amy E Goldman, Michael J Wilkins, Ed K Hall, Christa Pennacchio, Simon Roux, Emiley A Eloe-Fadrosh, Matthew B Sullivan, Christopher S Henry, Elisha M Wood-Charlson, Matthew R V Ross, Christopher S Miller, Byron C Crump, James C Stegen, Kelly C Wrighton
A functional microbiome catalog crowdsourced from North American rivers. bioRxiv : the preprint server for biology (2023)
Jiarui Sun, Paul N Evans, Emma J Gagen, Benjamin J Woodcroft, Brian P Hedlund, Tanja Woyke, Philip Hugenholtz, Christian Rinke
Correction: Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota. ISME communications 2 (1) (2022)
Joanne B Emerson, Ruth K Varner, Martin Wik, Donovan H Parks, Rebecca B Neumann, Joel E Johnson, Caitlin Margaret Singleton, Benjamin J Woodcroft, Rodney Tollerson, Akosua Owusu-Dommey, Morgan Binder, Nancy L Freitas, Patrick M Crill, Scott R Saleska, Gene W Tyson, Virginia I Rich
Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes. Nature communications 12 (1) (2021)
Jiarui Sun, Paul N Evans, Emma J Gagen, Benjamin J Woodcroft, Brian P Hedlund, Tanja Woyke, Philip Hugenholtz, Christian Rinke
Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages. ISME communications 1 (1) (2021)
Jiarui Sun, Paul N Evans, Emma J Gagen, Benjamin J Woodcroft, Brian P Hedlund, Tanja Woyke, Philip Hugenholtz, Christian Rinke
Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages. ISME communications 1 (1) (2021)
Nina Dombrowski, Tom A Williams, Jiarui Sun, Benjamin J Woodcroft, Jun-Hoe Lee, Bui Quang Minh, Christian Rinke, Anja Spang
Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution. Nature communications 11 (1) (2020)
Caitlin M Singleton, Carmody K McCalley, Benjamin J Woodcroft, Joel A Boyd, Paul N Evans, Suzanne B Hodgkins, Jeffrey P Chanton, Steve Frolking, Patrick M Crill, Scott R Saleska, Virginia I Rich, Gene W Tyson
Methanotrophy across a natural permafrost thaw environment. The ISME journal 12 (10) (2018)
Christian Rinke, Serene Low, Benjamin J Woodcroft, Jean-Baptiste Raina, Adam Skarshewski, Xuyen H Le, Margaret K Butler, Roman Stocker, Justin Seymour, Gene W Tyson, Philip Hugenholtz
Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics. PeerJ 4 (2016)