Brian G Pierce (Brian Pierce)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 30

Top Topics

Hepatitis C Virus

Helicobacter Pylori Infection

Top Venues

Nature communications

Nucleic acids research

Science advances

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Tala Azzam, Jonathan J Du, Maria W Flowers, Adeela V Ali, Jeremy C Hunn, Nina Vijayvargiya, Rushil Knagaram, Marek Bogacz, Kino E Maravillas, Diego E Sastre, James K Fields, Ardalan Mirzaei, Brian G Pierce, Eric John Sundberg
Combinatorially restricted computational design of protein-protein interfaces to produce IgG heterodimers. Science advances 10 (15) (2024)
Nathaniel Felbinger, Helder V Ribeiro-Filho, Brian G Pierce
Proscan: a structure-based proline design web server. Nucleic acids research (2024)
Zachary Z Reinstein, Yue Zhang, Oscar E Ospina, Matt D Nichols, Victoria A Chu, Alvaro de Mingo Pulido, Karol Prieto, Jonathan V Nguyen, Rui Yin, Carlos Moran Segura, Ahmed Usman, Brittney R Sell, Spencer Ng, Janis V de la Iglesia, Sunandana Chandra, Jeffrey A Sosman, Raymond J Cho, Jeffrey B Cheng, Ellie N Ivanova, Sergei B Koralov, Robbert J C Slebos, Christine H Chung, Nikhil I Khushalani, Jane L Messina, Amod A Sarnaik, Jonathan S Zager, Vernon K Sondak, Charles J Vaske, Sungjune Kim, Andrew S Brohl, Xinlei Mi, Brian G Pierce, Xuefeng Wang, Brooke L Fridley, Kenneth Y Tsai, Jaehyuk Choi
Pre-existing skin-resident CD8 and gd T cell circuits mediate immune response in Merkel cell carcinoma and predict immunotherapy efficacy. Cancer discovery (2024)
Nathaniel Felbinger, Helder V Ribeiro-Filho, Brian G Pierce
Proscan: a structure-based proline design web server. Nucleic acids research (2024)
Nathaniel Felbinger, Helder V Ribeiro-Filho, Brian G Pierce
Proscan: a structure-based proline design web server. Nucleic acids research 52 (W1) (2024)
Nathaniel Felbinger, Helder V Ribeiro-Filho, Brian G Pierce
Proscan: a structure-based proline design web server. Nucleic acids research (2024)
Helder Veras Ribeiro-Filho, Gabriel Ernesto Jara, João Victor da Silva Guerra, Melyssa Cheung, Nathaniel R Felbinger, José Geraldo de Carvalho Pereira, Brian G Pierce, Paulo Sergio Lopes de Oliveira
Exploring the Potential of Structure-Based Deep Learning Approaches for T cell Receptor Design. bioRxiv : the preprint server for biology (2024)
Tala Azzam, Jonathan J Du, Maria W Flowers, Adeela V Ali, Jeremy C Hunn, Nina Vijayvargiya, Rushil Knagaram, Marek Bogacz, Kino E Maravillas, Diego E Sastre, James K Fields, Ardalan Mirzaei, Brian G Pierce, Eric John Sundberg
Combinatorially restricted computational design of protein-protein interfaces to produce IgG heterodimers. Science advances 10 (15) (2024)
Tala Azzam, Jonathan J Du, Maria W Flowers, Adeela V Ali, Jeremy C Hunn, Nina Vijayvargiya, Rushil Knagaram, Marek Bogacz, Kino E Maravillas, Diego E Sastre, James K Fields, Ardalan Mirzaei, Brian G Pierce, Eric John Sundberg
Combinatorially restricted computational design of protein-protein interfaces to produce IgG heterodimers. Science advances 10 (15) (2024)
Nathaniel Felbinger, Helder V Ribeiro-Filho, Brian G Pierce
Proscan: a structure-based proline design web server. Nucleic acids research 52 (W1) (2024)
Tala Azzam, Jonathan J Du, Maria W Flowers, Adeela V Ali, Jeremy C Hunn, Nina Vijayvargiya, Rushil Knagaram, Marek Bogacz, Kino E Maravillas, Diego E Sastre, James K Fields, Ardalan Mirzaei, Brian G Pierce, Eric John Sundberg
Combinatorially restricted computational design of protein-protein interfaces to produce IgG heterodimers. Science advances 10 (15) (2024)
Helder Veras Ribeiro-Filho, Gabriel Ernesto Jara, João Victor da Silva Guerra, Melyssa Cheung, Nathaniel R Felbinger, José Geraldo de Carvalho Pereira, Brian G Pierce, Paulo Sergio Lopes de Oliveira
Exploring the Potential of Structure-Based Deep Learning Approaches for T cell Receptor Design. bioRxiv : the preprint server for biology (2024)
Matthew C Metcalf, Benjamin M Janus, Rui Yin, Ruixue Wang, Johnathan D Guest, Edwin Pozharski, Mansun Law, Roy A Mariuzza, Eric A Toth, Brian G Pierce, Thomas R Fuerst, Gilad Ofek
Structure of engineered hepatitis C virus E1E2 ectodomain in complex with neutralizing antibodies. Nature communications 14 (1) (2023)
Debajit Dey, Enya Qing, Yanan He, Yihong Chen, Benjamin C Jennings, Whitaker Cohn, Suruchi Singh, Lokesh Gakhar, Nicholas J Schnicker, Brian G Pierce, Julian P Whitelegge, Balraj Doray, John Orban, Thomas Gallagher, S Saif Hasan
A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs. Nature communications 14 (1) (2023)
Debajit Dey, Enya Qing, Yanan He, Yihong Chen, Benjamin C Jennings, Whitaker Cohn, Suruchi Singh, Lokesh Gakhar, Nicholas J Schnicker, Brian G Pierce, Julian P Whitelegge, Balraj Doray, John Orban, Thomas Gallagher, S Saif Hasan
A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs. Nature communications 14 (1) (2023)
Cecily Choy, Joseph Chen, Jiang-Yuan Li, D Travis Gallagher, Jian Lu, Daichao Wu, Ainslee Zou, Humza Hemani, Beverly A Baptiste, Emily Wichmann, Qian Yang, Jeffrey Ciffelo, Rui Yin, Julia McKelvy, Denise Melvin, Tonya Wallace, Christopher A Dunn, Cuong Nguyen, Chee W Chia, Jinshui Fan, Jeannie Ruffolo, Linda Zukley, Guixin Shi, Tomokazu Amano, Yang An, Osorio Meirelles, Wells W Wu, Chao-Kai Chou, Rong-Fong Shen, Richard A Willis, Minoru S H Ko, Yu-Tsueng Liu, Supriyo De, Brian G Pierce, Luigi Ferruci, Josephine M Egan, Roy A Mariuzza, Nan-Ping Weng
SARS-CoV-2 infection establishes a stable and age-independent CD8 + T cell response against a dominant nucleocapsid epitope using restricted T cell receptors. Nature communications 14 (1) (2023)
Rui Yin, Brian G Pierce
Evaluation of AlphaFold Antibody-Antigen Modeling with Implications for Improving Predictive Accuracy. Protein science : a publication of the Protein Society (2023)
Rui Yin, Helder V Ribeiro-Filho, Valerie Lin, Ragul Gowthaman, Melyssa Cheung, Brian G Pierce
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning. Nucleic acids research (2023)
Rui Yin, Helder V Ribeiro-Filho, Valerie Lin, Ragul Gowthaman, Melyssa Cheung, Brian G Pierce
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning. Nucleic acids research (2023)
Debajit Dey, Enya Qing, Yanan He, Yihong Chen, Benjamin C Jennings, Whitaker Cohn, Suruchi Singh, Lokesh Gakhar, Nicholas J Schnicker, Brian G Pierce, Julian P Whitelegge, Balraj Doray, John Orban, Thomas Gallagher, S Saif Hasan
A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs. Nature communications 14 (1) (2023)
Debajit Dey, Enya Qing, Yanan He, Yihong Chen, Benjamin C Jennings, Whitaker Cohn, Suruchi Singh, Lokesh Gakhar, Nicholas J Schnicker, Brian G Pierce, Julian P Whitelegge, Balraj Doray, John Orban, Thomas Gallagher, S Saif Hasan
A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs. Nature communications 14 (1) (2023)
Daichao Wu, Alexander Kolesnikov, Rui Yin, Johnathan D Guest, Ragul Gowthaman, Anton Shmelev, Yana Serdyuk, Dmitry V Dianov, Grigory A Efimov, Brian G Pierce, Roy A Mariuzza
Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors. Nature communications 13 (1) (2022)
Debajit Dey, Suruchi Singh, Saif Khan, Matthew Martin, Nicholas J Schnicker, Lokesh Gakhar, Brian G Pierce, S Saif Hasan
An extended motif in the SARS-CoV-2 spike modulates binding and release of host coatomer in retrograde trafficking. Communications biology 5 (1) (2022)
Rui Yin, Brandon Y Feng, Amitabh Varshney, Brian G Pierce
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants. Protein science : a publication of the Protein Society 31 (8) (2022)
Ruixue Wang, Saori Suzuki, Johnathan D Guest, Brigitte Heller, Maricar Almeda, Alexander K Andrianov, Alexander Marin, Roy A Mariuzza, Zhen-Yong Keck, Steven K H Foung, Abdul S Yunus, Brian G Pierce, Eric A Toth, Alexander Ploss, Thomas R Fuerst
Induction of broadly neutralizing antibodies using a secreted form of the hepatitis C virus E1E2 heterodimer as a vaccine candidate. Proceedings of the National Academy of Sciences of the United States of America 119 (11) (2022)
Johnathan D Guest, Ruixue Wang, Khadija H Elkholy, Andrezza Chagas, Kinlin L Chao, Thomas E Cleveland, Young Chang Kim, Zhen-Yong Keck, Alexander Marin, Abdul S Yunus, Roy A Mariuzza, Alexander K Andrianov, Eric A Toth, Steven K H Foung, Brian G Pierce, Thomas R Fuerst
Design of a native-like secreted form of the hepatitis C virus E1E2 heterodimer. Proceedings of the National Academy of Sciences of the United States of America 118 (3) (2021)
Rui Yin, Johnathan D Guest, Ghazaleh Taherzadeh, Ragul Gowthaman, Ipsa Mittra, Jane Quackenbush, Brian G Pierce
Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants. PLoS computational biology 17 (9) (2021)
Julia Koehler Leman, Brian D Weitzner, Steven M Lewis, Jared Adolf-Bryfogle, Nawsad Alam, Rebecca F Alford, Melanie Aprahamian, Julien S Baker, Kyle A Barlow, Patrick Barth, Benjamin Basanta, Brian J Bender, Kristin Blacklock, Jaume Bonet, Scott E Boyken, Philip G Bradley, Chris Bystroff, Patrick Conway, Seth Cooper, Bruno E Correia, Brian Coventry, Rachel J Hagey, René M De Jong, Frank DiMaio, Lorna Dsilva, Roland L Dunbrack, Alexander S Ford, Brandon Frenz, Darwin Y Fu, Caleb Geniesse, Lukasz Goldschmidt, Ragul Gowthaman, Jeffrey J Gray, Dominik Gront, Sharon Guffy, Scott Horowitz, Po-Ssu Huang, Thomas Huber, Tim M Jacobs, Jeliazko R Jeliazkov, David K Johnson, Kalli Kappel, John Karanicolas, Hamed Khakzad, Karen R Khar, Sagar D Khare, Firas Khatib, Alisa Khramushin, Indigo C King, Robert Kleffner, Brian Koepnick, Tanja Kortemme, Georg Kuenze, Brian Kuhlman, Daisuke Kuroda, Jason W Labonte, Jason K Lai, Gideon Lapidoth, Andrew Leaver-Fay, Steffen Lindert, Thomas Linsky, Nir London, Joseph H Lubin, Sergey Lyskov, Jack Maguire, Lars Malmström, Enrique Marcos, Orly Marcu, Nicholas A Marze, Jens Meiler, Rocco Moretti, Vikram Khipple Mulligan, Santrupti Nerli, Christoffer Norn, Shane Ó'Conchúir, Noah Ollikainen, Sergey Ovchinnikov, Michael S Pacella, Xingjie Pan, Hahnbeom Park, Ryan E Pavlovicz, Manasi Pethe, Brian G Pierce, Kala Bharath Pilla, Barak Raveh, P Douglas Renfrew, Shourya S Roy Burman, Aliza Rubenstein, Marion F Sauer, Andreas Scheck, William R Schief, Ora Schueler-Furman, Yuval Sedan, Alexander M Sevy, Nikolaos G Sgourakis, Lei Shi, Justin B Siegel, Daniel-Adriano Silva, Shannon Smith, Yifan Song, Amelie Stein, Maria Szegedy, Frank D Teets, Summer B Thyme, Ray Yu-Ruei Wang, Andrew Watkins, Lior Zimmerman, Richard A Bonneau
Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature methods 17 (7) (2020)
Jay C Daniels, Peter G Doukas, Maria E Martinez Escala, Kimberly G Ringbloom, David J H Shih, Jingyi Yang, Kyle Tegtmeyer, Joonhee Park, Jane J Thomas, Mehmet E Selli, Can Altunbulakli, Ragul Gowthaman, Samuel H Mo, Balaji Jothishankar, David Randall Pease, Barbara Pro, Farah R Abdulla, Christopher Shea, Nidhi Sahni, Alejandro A Gru, Brian G Pierce, Abner Louissaint, Joan Guitart, Jaehyuk Choi
Cellular origins and genetic landscape of cutaneous gamma delta T cell lymphomas. Nature communications 11 (1) (2020)
Daichao Wu, D Travis Gallagher, Ragul Gowthaman, Brian G Pierce, Roy A Mariuzza
Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen. Nature communications 11 (1) (2020)