Kalli Kappel

ORCID

Publication Activity (10 Years)

Years Active: 2018-2022
Publications (10 Years): 8

Top Venues

Nature methods

Nature

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Seiichi Hirano, Kalli Kappel, Han Altae-Tran, Guilhem Faure, Max E Wilkinson, Soumya Kannan, F Esra Demircioglu, Rui Yan, Momoko Shiozaki, Zhiheng Yu, Kira S Makarova, Eugene V Koonin, Rhiannon K Macrae, Feng Zhang
Structure of the OMEGA nickase IsrB in complex with ωRNA and target DNA. Nature 610 (7932) (2022)
Zhaoming Su, Kaiming Zhang, Kalli Kappel, Shanshan Li, Michael Z Palo, Grigore D Pintilie, Ramya Rangan, Bingnan Luo, Yuquan Wei, Rachel J Hagey, Wah Chiu
Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution. Nature 596 (7873) (2021)
Xin Liu, Tao Sun, Anna Shcherbina, Qin Li, Inga Jarmoskaite, Kalli Kappel, Gokul Ramaswami, Rachel J Hagey, Anshul Kundaje, Jin Billy Li
Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis. Nature communications 12 (1) (2021)
Kalli Kappel, Kaiming Zhang, Zhaoming Su, Andrew M Watkins, Wipapat Kladwang, Shanshan Li, Grigore D Pintilie, Ved V Topkar, Ramya Rangan, Ivan N Zheludev, Joseph D Yesselman, Wah Chiu, Rachel J Hagey
Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures. Nature methods 17 (7) (2020)
Julia Koehler Leman, Brian D Weitzner, Steven M Lewis, Jared Adolf-Bryfogle, Nawsad Alam, Rebecca F Alford, Melanie Aprahamian, Julien S Baker, Kyle A Barlow, Patrick Barth, Benjamin Basanta, Brian J Bender, Kristin Blacklock, Jaume Bonet, Scott E Boyken, Philip G Bradley, Chris Bystroff, Patrick Conway, Seth Cooper, Bruno E Correia, Brian Coventry, Rachel J Hagey, René M De Jong, Frank DiMaio, Lorna Dsilva, Roland L Dunbrack, Alexander S Ford, Brandon Frenz, Darwin Y Fu, Caleb Geniesse, Lukasz Goldschmidt, Ragul Gowthaman, Jeffrey J Gray, Dominik Gront, Sharon Guffy, Scott Horowitz, Po-Ssu Huang, Thomas Huber, Tim M Jacobs, Jeliazko R Jeliazkov, David K Johnson, Kalli Kappel, John Karanicolas, Hamed Khakzad, Karen R Khar, Sagar D Khare, Firas Khatib, Alisa Khramushin, Indigo C King, Robert Kleffner, Brian Koepnick, Tanja Kortemme, Georg Kuenze, Brian Kuhlman, Daisuke Kuroda, Jason W Labonte, Jason K Lai, Gideon Lapidoth, Andrew Leaver-Fay, Steffen Lindert, Thomas Linsky, Nir London, Joseph H Lubin, Sergey Lyskov, Jack Maguire, Lars Malmström, Enrique Marcos, Orly Marcu, Nicholas A Marze, Jens Meiler, Rocco Moretti, Vikram Khipple Mulligan, Santrupti Nerli, Christoffer Norn, Shane Ó'Conchúir, Noah Ollikainen, Sergey Ovchinnikov, Michael S Pacella, Xingjie Pan, Hahnbeom Park, Ryan E Pavlovicz, Manasi Pethe, Brian G Pierce, Kala Bharath Pilla, Barak Raveh, P Douglas Renfrew, Shourya S Roy Burman, Aliza Rubenstein, Marion F Sauer, Andreas Scheck, William R Schief, Ora Schueler-Furman, Yuval Sedan, Alexander M Sevy, Nikolaos G Sgourakis, Lei Shi, Justin B Siegel, Daniel-Adriano Silva, Shannon Smith, Yifan Song, Amelie Stein, Maria Szegedy, Frank D Teets, Summer B Thyme, Ray Yu-Ruei Wang, Andrew Watkins, Lior Zimmerman, Richard A Bonneau
Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature methods 17 (7) (2020)
Kalli Kappel, Inga Jarmoskaite, Pavanapuresan P Vaidyanathan, William J Greenleaf, Daniel Herschlag, Rachel J Hagey
Blind tests of RNA-protein binding affinity prediction. Proceedings of the National Academy of Sciences of the United States of America 116 (17) (2019)
Kaiming Zhang, Shanshan Li, Kalli Kappel, Grigore Pintilie, Zhaoming Su, Tung-Chung Mou, Michael F Schmid, Rachel J Hagey, Wah Chiu
Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution. Nature communications 10 (1) (2019)
Kalli Kappel, Shiheng Liu, Kevin P Larsen, Georgios Skiniotis, Elisabetta Viani Puglisi, Joseph D Puglisi, Z Hong Zhou, Rui Zhao, Rachel J Hagey
De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes. Nature methods 15 (11) (2018)

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Publication Activity (10 Years)

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Kalli Kappel