Yafei Mao

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 30

Top Topics

Postmenopausal Women

Pluripotent Stem Cells

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature (2024)
Shilong Zhang, Ning Xu, Lianting Fu, Xiangyu Yang, Yamei Li, Zikun Yang, Yu Feng, Kaiyue Ma, Xinrui Jiang, Junmin Han, Ruixing Hu, Lu Zhang, Luciana de Gennaro, Fedor Ryabov, Dan Meng, Yaoxi He, Dongya Wu, Chentao Yang, Annalisa Paparella, Yuxiang Mao, Xinyan Bian, Yong Lu, Francesca Antonacci, Mario Ventura, Valery A Shepelev, Karen H Miga, Ivan A Alexandrov, Glennis A Logsdon, Adam M Phillippy, Bing Su, Guojie Zhang, Evan E Eichler, Qing Lu, Yongyong Shi, Qiang Sun, Yafei Mao
Comparative genomics of macaques and integrated insights into genetic variation and population history. bioRxiv : the preprint server for biology (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven Jared Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Yongwook Choi, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David M Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William D Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat Kumar Mohanty, Katherine M Munson, Karol Pal, Matthew W Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary Alfano Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin K Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler
Complete sequencing of ape genomes. bioRxiv : the preprint server for biology (2024)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Claudia Rita Catacchio, David Porubsky, Yafei Mao, DongAhn Yoo, Mikko Rautiainen, Sergey Koren, Sergey Nurk, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Mario Ventura, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. Nature 629 (8010) (2024)
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven Jared Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Yongwook Choi, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David M Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William D Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat Kumar Mohanty, Katherine M Munson, Karol Pal, Matthew W Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary Alfano Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin K Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler
Complete sequencing of ape genomes. bioRxiv : the preprint server for biology (2024)
Xiangyu Yang, Xuankai Wang, Yawen Zou, Shilong Zhang, Manying Xia, Lianting Fu, Mitchell R Vollger, Nae-Chyun Chen, Dylan J Taylor, William T Harvey, Glennis A Logsdon, Dan Meng, Junfeng Shi, Rajiv C McCoy, Michael C Schatz, Weidong Li, Evan E Eichler, Qing Lu, Yafei Mao
Characterization of large-scale genomic differences in the first complete human genome. Genome biology 24 (1) (2023)
Mariam Okhovat, Jake VanCampen, Kimberly A Nevonen, Lana Harshman, Weiyu Li, Cora E Layman, Samantha Ward, Jarod Herrera, Jackson Wells, Rory R Sheng, Yafei Mao, Blaise Ndjamen, Ana C Lima, Katinka A Vigh-Conrad, Alexandra M Stendahl, Ran Yang, Lev Fedorov, Ian R Matthews, Sarah A Easow, Dylan K Chan, Taha A Jan, Evan E Eichler, Sandra Rugonyi, Donald F Conrad, Nadav Ahituv, Lucia Carbone
TAD evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function. Nature communications 14 (1) (2023)
Glennis A Logsdon, Allison N Rozanski, Fedor D Ryabov, Tamara A Potapova, Valery A Shepelev, Yafei Mao, Mikko Rautiainen, Sergey Koren, Sergey Nurk, David Porubsky, Julian K Lucas, Kendra Hoekzema, Katherine M Munson, Jennifer L Gerton, Adam M Phillippy, Ivan A Alexandrov, Evan E Eichler
The variation and evolution of complete human centromeres. bioRxiv : the preprint server for biology (2023)
Yafei Mao, William T Harvey, David Porubsky, Katherine M Munson, Kendra Hoekzema, Alexandra P Lewis, Peter A Audano, Allison Rozanski, Xiangyu Yang, Shilong Zhang, David S Gordon, Xiaoxi Wei, Glennis A Logsdon, Marina Haukness, Philip C Dishuck, Hyeonsoo Jeong, Ricardo Del Rosario, Vanessa L Bauer, Will T Fattor, Gregory K Wilkerson, Qing Lu, Benedict Paten, Guoping Feng, Sara L Sawyer, Wesley C Warren, Lucia Carbone, Evan E Eichler
Structurally divergent and recurrently mutated regions of primate genomes. bioRxiv : the preprint server for biology (2023)
Yafei Mao, Guo-Jie Zhang
A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics. Nature methods 19 (6) (2022)
Jana Ebler, Peter Ebert, Wayne E Clarke, Tobias Rausch, Peter A Audano, Torsten Houwaart, Yafei Mao, Jan O Korbel, Evan E Eichler, Michael C Zody, Alexander T Dilthey, Tobias Marschall
Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes. Nature genetics 54 (4) (2022)
Tianyun Wang, Chang N Kim, Trygve E Bakken, Madelyn A Gillentine, Barbara Henning, Yafei Mao, Christian Gilissen, null null, Tomasz J Nowakowski, Evan E Eichler
Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders. Proceedings of the National Academy of Sciences of the United States of America 119 (46) (2022)
Glennis A Logsdon, Mitchell R Vollger, PingHsun Hsieh, Yafei Mao, Mikhail A Liskovykh, Sergey Koren, Sergey Nurk, Ludovica Mercuri, Philip C Dishuck, Arang Rhie, Leonardo Gomes de Lima, Tatiana Dvorkina, David Porubsky, William T Harvey, Alla Mikheenko, Andrey V Bzikadze, Milinn Kremitzki, Tina A Graves-Lindsay, Chirag Jain, Kendra Hoekzema, Shwetha C Murali, Katherine M Munson, Carl Baker, Melanie Sorensen, Alexandra M Lewis, Urvashi Surti, Jennifer L Gerton, Vladimir Larionov, Mario Ventura, Karen H Miga, Adam M Phillippy, Evan E Eichler
The structure, function and evolution of a complete human chromosome 8. Nature 593 (7857) (2021)
PingHsun Hsieh, Vy Dang, Mitchell R Vollger, Yafei Mao, Tzu-Hsueh Huang, Philip C Dishuck, Carl Baker, Stuart Cantsilieris, Alexandra P Lewis, Katherine M Munson, Melanie Sorensen, AnneMarie E Welch, Jason G Underwood, Evan E Eichler
Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans. Nature communications 12 (1) (2021)
Wesley C Warren, Ronald Alan Harris, Marina Haukness, Ian T Fiddes, Shwetha C Murali, Jason D Fernandes, Philip C Dishuck, Jessica M Storer, Muthuswamy Raveendran, LaDeana W Hillier, David Porubsky, Yafei Mao, David Gordon, Mitchell R Vollger, Alexandra P Lewis, Katherine M Munson, Elizabeth DeVogelaere, Joel Armstrong, Mark E Diekhans, Jerilyn A Walker, Chad Tomlinson, Tina A Graves-Lindsay, Milinn Kremitzki, Sofie R Salama, Peter A Audano, Merly Escalona, Nicholas W Maurer, Francesca Antonacci, Ludovica Mercuri, Flavia Angela Maria Maggiolini, Claudia Rita Catacchio, Jason G Underwood, David H O'Connor, Ashley D Sanders, Jan O Korbel, Betsy M Ferguson, H Michael Kubisch, Louis J Picker, Ned H Kalin, Douglas Rosene, Jon E Levine, David H Abbott, Stanton B Gray, Mar M Sanchez, Zsofia A Kovacs-Balint, Joseph W Kemnitz, Sara M Thomasy, Jeffrey A Roberts, Erin L Kinnally, John P Capitanio, Jesse A G Skene, Michael Louis Platt, Shelley A Cole, Richard E Green, Mario Ventura, Roger W Wiseman, Benedict Paten, Mark A Batzer, Jeffrey Rogers, Evan E Eichler
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Science (New York, N.Y.) 370 (6523) (2021)
Yafei Mao, Claudia Rita Catacchio, LaDeana W Hillier, David Porubsky, Ruiyang Li, Arvis Sulovari, Jason D Fernandes, Francesco Montinaro, David S Gordon, Jessica M Storer, Marina Haukness, Ian T Fiddes, Shwetha Canchi Murali, Philip C Dishuck, PingHsun Hsieh, William T Harvey, Peter A Audano, Ludovica Mercuri, Ilaria Piccolo, Francesca Antonacci, Katherine M Munson, Alexandra P Lewis, Carl Baker, Jason G Underwood, Kendra Hoekzema, Tzu-Hsueh Huang, Melanie Sorensen, Jerilyn A Walker, Jinna Hoffman, Françoise Thibaud-Nissen, Sofie R Salama, Andy Wing Chun Pang, Joyce Lee, Alex R Hastie, Benedict Paten, Mark A Batzer, Mark E Diekhans, Mario Ventura, Evan E Eichler
A high-quality bonobo genome refines the analysis of hominid evolution. Nature 594 (7861) (2021)
Yafei Mao, Siqing Hou, Junfeng Shi, Evan P Economo
TREEasy: An automated workflow to infer gene trees, species trees, and phylogenetic networks from multilocus data. Molecular ecology resources 20 (3) (2020)