Cheng-Zhong Zhang

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 16

Top Venues

Nature genetics

bioRxiv : the preprint server for biology

Nature communications

Genome research

Dana-Farber Cancer Institute

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Dana-Farber Cancer Institute Sep 01 2016

United States

Assistant Professor :: Biostatistics and Computational Biology

Publications

Gregory J Brunette, Richard W Tourdot, Darawalee Wangsa, David Pellman, Cheng-Zhong Zhang
Haplotype-resolved karyotype construction from Hi-C data using refLinker. bioRxiv : the preprint server for biology (2024)
Cheng-Zhong Zhang, David Pellman
Chromosome breakage-replication/fusion enables rapid DNA amplification. bioRxiv : the preprint server for biology (2024)
Gregory J Brunette, Richard W Tourdot, Darawalee Wangsa, David Pellman, Cheng-Zhong Zhang
Haplotype-resolved karyotype construction from Hi-C data using refLinker. bioRxiv : the preprint server for biology (2024)
Chunyang Bao, Richard W Tourdot, Gregory J Brunette, Chip Stewart, Lili Sun, Hideo Baba, Masayuki Watanabe, Agoston T Agoston, Kunal Jajoo, Jon M Davison, Katie S Nason, Gad A Getz, Kenneth K Wang, Yu Imamura, Robert D Odze, Adam J Bass, Matthew D Stachler, Cheng-Zhong Zhang
Genomic signatures of past and present chromosomal instability in Barrett's esophagus and early esophageal adenocarcinoma. Nature communications 14 (1) (2023)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics (2023)
Stamatis Papathanasiou, Nikos A Mynhier, Shiwei Liu, Gregory J Brunette, Ema Stokasimov, Etai Jacob, Lanting Li, Caroline Comenho, Bas van Steensel, Jason D Buenrostro, Cheng-Zhong Zhang, David Pellman
Heritable transcriptional defects from aberrations of nuclear architecture. Nature (2023)
Jiahui Zhang, Cheng-Zhong Zhang
Examining the cooperation between extrachromosomal DNA circles. eLife 11 (2022)
David Pellman, Cheng-Zhong Zhang
Decoding complex patterns of oncogene amplification. Nature genetics 53 (12) (2021)
Stamatis Papathanasiou, Styliani Markoulaki, Logan J Blaine, Mitchell L Leibowitz, Cheng-Zhong Zhang, Rudolf Jaenisch, David Pellman
Whole chromosome loss and genomic instability in mouse embryos after CRISPR-Cas9 genome editing. Nature communications 12 (1) (2021)
Mitchell L Leibowitz, Stamatis Papathanasiou, Phillip A Doerfler, Logan J Blaine, Lili Sun, Yu Yao, Cheng-Zhong Zhang, Mitchell J Weiss, David Pellman
Chromothripsis as an on-target consequence of CRISPR-Cas9 genome editing. Nature genetics 53 (6) (2021)
Richard W Tourdot, Gregory J Brunette, Ricardo A Pinto, Cheng-Zhong Zhang
Determination of complete chromosomal haplotypes by bulk DNA sequencing. Genome biology 22 (1) (2021)
Neil T Umbreit, Cheng-Zhong Zhang, Luke D Lynch, Logan J Blaine, Anna M Cheng, Richard Tourdot, Lili Sun, Hannah F Almubarak, Kim Judge, Thomas J Mitchell, Alexander Spektor, David Pellman
Mechanisms generating cancer genome complexity from a single cell division error. Science (New York, N.Y.) 368 (6488) (2020)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics 52 (3) (2020)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics (2020)
Jeremiah A Wala, Pratiti Bandopadhayay, Noah F Greenwald, Ryan O'Rourke, Ted Sharpe, Chip Stewart, Steven E Schumacher, Yilong Li, Joachim Weischenfeldt, Xiaotong Yao, Chad Nusbaum, Peter Campbell, Gad A Getz, Matthew L Meyerson, Cheng-Zhong Zhang, Marcin Imielinski, Rameen Beroukhim
SvABA: genome-wide detection of structural variants and indels by local assembly. Genome research 28 (4) (2018)
Wenyu Song, Hailiang Huang, Cheng-Zhong Zhang, David W Bates, Adam Wright
Using whole genome scores to compare three clinical phenotyping methods in complex diseases. Scientific reports 8 (1) (2018)

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Publication Activity (10 Years)

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Cheng-Zhong Zhang