Isidro Cortes-Ciriano (I Cortés-Ciriano, Isidro Cortés-Ciriano)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 49

Top Venues

Nature communications

Cancer discovery

Nature genetics

Communications biology

European Bioinformatics Institute

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Bioinformatics Institute Jun 01 2019

United Kingdom

Research Group Leader :: Cortes-Ciriano group

Publications

Francesc Muyas, Manuel José Gómez Rodriguez, Rita Cascão, Angela Afonso, Carolin Margarethe Sauer, Claudia C Faria, Isidro Cortes-Ciriano, Ignacio Flores
The ALT pathway generates telomere fusions that can be detected in the blood of cancer patients. Nature communications 15 (1) (2024)
Francesc Muyas, Manuel José Gómez Rodriguez, Rita Cascão, Angela Afonso, Carolin Margarethe Sauer, Claudia C Faria, Isidro Cortes-Ciriano, Ignacio Flores
The ALT pathway generates telomere fusions that can be detected in the blood of cancer patients. Nature communications 15 (1) (2024)
Francesc Muyas, Manuel José Gómez Rodriguez, Rita Cascão, Angela Afonso, Carolin Margarethe Sauer, Claudia C Faria, Isidro Cortes-Ciriano, Ignacio Flores
The ALT pathway generates telomere fusions that can be detected in the blood of cancer patients. Nature communications 15 (1) (2024)
Qing Hu, Jose Espejo Valle-Inclan, Rashmi Dahiya, Alison Guyer, Alice Mazzagatti, Elizabeth G Maurais, Justin L Engel, Huiming Lu, Anthony J Davis, Isidro Cortes-Ciriano, Peter Ly
Non-homologous end joining shapes the genomic rearrangement landscape of chromothripsis from mitotic errors. Nature communications 15 (1) (2024)
Francesc Muyas, Manuel José Gómez Rodriguez, Rita Cascão, Angela Afonso, Carolin Margarethe Sauer, Claudia C Faria, Isidro Cortes-Ciriano, Ignacio Flores
The ALT pathway generates telomere fusions that can be detected in the blood of cancer patients. Nature communications 15 (1) (2024)
Qing Hu, Jose Espejo Valle-Inclan, Rashmi Dahiya, Alison Guyer, Alice Mazzagatti, Elizabeth G Maurais, Justin L Engel, Huiming Lu, Anthony J Davis, Isidro Cortes-Ciriano, Peter Ly
Non-homologous end joining shapes the genomic rearrangement landscape of chromothripsis from mitotic errors. Nature communications 15 (1) (2024)
Francesc Muyas, Manuel José Gómez Rodriguez, Rita Cascão, Angela Afonso, Carolin Margarethe Sauer, Claudia C Faria, Isidro Cortes-Ciriano, Ignacio Flores
The ALT pathway generates telomere fusions that can be detected in the blood of cancer patients. Nature communications 15 (1) (2024)
Qing Hu, Jose Espejo Valle-Inclan, Rashmi Dahiya, Alison Guyer, Alice Mazzagatti, Elizabeth G Maurais, Justin L Engel, Huiming Lu, Anthony J Davis, Isidro Cortes-Ciriano, Peter Ly
Non-homologous end joining shapes the genomic rearrangement landscape of chromothripsis from mitotic errors. Nature communications 15 (1) (2024)
Sung Chul Hong, Francesc Muyas, Isidro Cortes-Ciriano, Sahand Hormoz
scAI-SNP: a method for inferring ancestry from single-cell data. bioRxiv : the preprint server for biology (2024)
Francesc Muyas, Manuel José Gómez Rodriguez, Rita Cascão, Angela Afonso, Carolin Margarethe Sauer, Claudia C Faria, Isidro Cortes-Ciriano, Ignacio Flores
The ALT pathway generates telomere fusions that can be detected in the blood of cancer patients. Nature communications 15 (1) (2024)
Sung Chul Hong, Francesc Muyas, Isidro Cortes-Ciriano, Sahand Hormoz
scAI-SNP: a method for inferring ancestry from single-cell data. bioRxiv : the preprint server for biology (2024)
Qing Hu, Jose Espejo Valle-Inclan, Rashmi Dahiya, Alison Guyer, Alice Mazzagatti, Elizabeth G Maurais, Justin L Engel, Huiming Lu, Anthony J Davis, Isidro Cortes-Ciriano, Peter Ly
Non-homologous end joining shapes the genomic rearrangement landscape of chromothripsis from mitotic errors. Nature communications 15 (1) (2024)
Sung Chul Hong, Francesc Muyas, Isidro Cortes-Ciriano, Sahand Hormoz
scAI-SNP: a method for inferring ancestry from single-cell data. bioRxiv : the preprint server for biology (2024)
Peter M K Westcott, Francesc Muyas, Haley Hauck, Olivia C Smith, Nathan J Sacks, Zackery A Ely, Alex M Jaeger, William M Rideout, Daniel Zhang, Arjun Bhutkar, Mary Clare Beytagh, David A Canner, Grissel C Jaramillo, Roderick T Bronson, Santiago Naranjo, Abbey Jin, Justin J Patten, Amanda M Cruz, Sean-Luc Shanahan, Isidro Cortes-Ciriano, Tyler Jacks
Mismatch repair deficiency is not sufficient to elicit tumor immunogenicity. Nature genetics (2023)
Federica Scotto di Carlo, Sharon Russo, Francesc Muyas, Maria Mangini, Lorenza Garribba, Laura Pazzaglia, Rita Genesio, Flavia Biamonte, Anna Chiara De Luca, Stefano Santaguida, Katia Scotlandi, Isidro Cortes-Ciriano, Fernando Gianfrancesco
Profilin 1 deficiency drives mitotic defects and reduces genome stability. Communications biology 6 (1) (2023)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Jake June-Koo Lee, Youngsook Lucy Jung, Taek-Chin Cheong, Jose Espejo Valle-Inclan, Chong Chu, Doga C Gulhan, Viktor Ljungström, Hu Jin, Vinayak V Viswanadham, Emma V Watson, Isidro Cortes-Ciriano, Stephen J Elledge, Roberto Chiarle, David Pellman, Peter J Park
ERα-associated translocations underlie oncogene amplifications in breast cancer. Nature (2023)
Qing Hu, Jose Espejo Valle-Inclan, Rashmi Dahiya, Alison Guyer, Alice Mazzagatti, Elizabeth G Maurais, Justin L Engel, Isidro Cortes-Ciriano, Peter Ly
Non-homologous end joining shapes the genomic rearrangement landscape of chromothripsis from mitotic errors. bioRxiv : the preprint server for biology (2023)
Yu-Fen Lin, Qing Hu, Alice Mazzagatti, Jose Espejo Valle-Inclan, Elizabeth G Maurais, Rashmi Dahiya, Alison Guyer, Jacob T Sanders, Justin L Engel, Giaochau Nguyen, Daniel Bronder, Samuel F Bakhoum, Isidro Cortes-Ciriano, Peter Ly
Mitotic clustering of pulverized chromosomes from micronuclei. Nature (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Federica Scotto di Carlo, Sharon Russo, Francesc Muyas, Maria Mangini, Lorenza Garribba, Laura Pazzaglia, Rita Genesio, Flavia Biamonte, Anna Chiara De Luca, Stefano Santaguida, Katia Scotlandi, Isidro Cortes-Ciriano, Fernando Gianfrancesco
Profilin 1 deficiency drives mitotic defects and reduces genome stability. Communications biology 6 (1) (2023)
Federica Scotto di Carlo, Sharon Russo, Francesc Muyas, Maria Mangini, Lorenza Garribba, Laura Pazzaglia, Rita Genesio, Flavia Biamonte, Anna Chiara De Luca, Stefano Santaguida, Katia Scotlandi, Isidro Cortes-Ciriano, Fernando Gianfrancesco
Profilin 1 deficiency drives mitotic defects and reduces genome stability. Communications biology 6 (1) (2023)
Federica Scotto di Carlo, Sharon Russo, Francesc Muyas, Maria Mangini, Lorenza Garribba, Laura Pazzaglia, Rita Genesio, Flavia Biamonte, Anna Chiara De Luca, Stefano Santaguida, Katia Scotlandi, Isidro Cortes-Ciriano, Fernando Gianfrancesco
Profilin 1 deficiency drives mitotic defects and reduces genome stability. Communications biology 6 (1) (2023)
Federica Scotto di Carlo, Sharon Russo, Francesc Muyas, Maria Mangini, Lorenza Garribba, Laura Pazzaglia, Rita Genesio, Flavia Biamonte, Anna Chiara De Luca, Stefano Santaguida, Katia Scotlandi, Isidro Cortes-Ciriano, Fernando Gianfrancesco
Profilin 1 deficiency drives mitotic defects and reduces genome stability. Communications biology 6 (1) (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller
Genomic patterns of malignant peripheral nerve sheath tumor (MPNST) evolution correlate with clinical outcome and are detectable in cell-free DNA. Cancer discovery (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Federica Scotto di Carlo, Sharon Russo, Francesc Muyas, Maria Mangini, Lorenza Garribba, Laura Pazzaglia, Rita Genesio, Flavia Biamonte, Anna Chiara De Luca, Stefano Santaguida, Katia Scotlandi, Isidro Cortes-Ciriano, Fernando Gianfrancesco
Profilin 1 deficiency drives mitotic defects and reduces genome stability. Communications biology 6 (1) (2023)
Yu-Fen Lin, Qing Hu, Alice Mazzagatti, Jose Espejo Valle-Inclan, Elizabeth G Maurais, Rashmi Dahiya, Alison Guyer, Jacob T Sanders, Justin L Engel, Giaochau Nguyen, Daniel Bronder, Samuel F Bakhoum, Isidro Cortes-Ciriano, Peter Ly
Mitotic clustering of pulverized chromosomes from micronuclei. Nature (2023)
Francesc Muyas, Carolin Margarethe Sauer, Jose Espejo Valle-Inclan, Ruoyan Li, Raheleh Rahbari, Thomas J Mitchell, Sahand Hormoz, Isidro Cortes-Ciriano
De novo detection of somatic mutations in high-throughput single-cell profiling data sets. Nature biotechnology (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Lina Sieverling, Chen Hong, Sandra D Koser, Philip Ginsbach, Kortine Kleinheinz, Barbara Hutter, Delia M Braun, Isidro Cortes-Ciriano, Ruibin Xi, Rolf Kabbe, Peter J Park, Roland Eils, Matthias Schlesner, null null, Benedikt Brors, Karsten Rippe, David T W Jones, Lars Feuerbach, null null
Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer. Nature communications 13 (1) (2022)
Thomas Richard William Oliver, Lia Chappell, Rashesh Sanghvi, Lauren Deighton, Naser Ansari-Pour, Stefan C Dentro, Matthew D Young, Tim H H Coorens, Hyunchul Jung, Timothy M Butler, Matthew D C Neville, Daniel A Leongamornlert, Mathijs A Sanders, Yvette Hooks, Alex T J Cagan, Thomas J Mitchell, Isidro Cortes-Ciriano, Anne Y Warren, David C Wedge, Rakesh Heer, Nicholas Coleman, Matthew Jonathan Murray, Peter J Campbell, Raheleh Rahbari, Sam Behjati
Clonal diversification and histogenesis of malignant germ cell tumours. Nature communications 13 (1) (2022)
Isidro Cortes-Ciriano, Ctibor Škuta, Andreas Bender, Daniel Svozil
QSAR-derived affinity fingerprints (part 2): modeling performance for potency prediction. Journal of cheminformatics 12 (1) (2020)
Ctibor Škuta, Isidro Cortes-Ciriano, Wim Dehaen, P Kříž, Gerard van Westen, Igor V Tetko, Andreas Bender, Daniel Svozil
QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping. Journal of cheminformatics 12 (1) (2020)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics 52 (3) (2020)
Lina Sieverling, Chen Hong, Sandra D Koser, Philip Ginsbach, Kortine Kleinheinz, Barbara Hutter, Delia M Braun, Isidro Cortes-Ciriano, Ruibin Xi, Rolf Kabbe, Peter J Park, Roland Eils, Matthias Schlesner, null null, Benedikt Brors, Karsten Rippe, David T W Jones, Lars Feuerbach, null null
Genomic footprints of activated telomere maintenance mechanisms in cancer. Nature communications 11 (1) (2020)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics (2020)
Mary J Goldman, Junjun Zhang, Nuno A Fonseca, Isidro Cortes-Ciriano, Linda Xiang, Brian Craft, Elena Piñeiro-Yañez, Brian D O'Connor, Wojciech Bazant, Elisabet Barrera, Alfonso Muñoz-Pomer, Robert Petryszak, Anja Füllgrabe, Fátima Al-Shahrour, Maria Keays, David Haussler, John N Weinstein, Wolfgang Huber, Alfonso Valencia, Peter J Park, Irene Papatheodorou, Jingchun Zhu, Vincent Ferretti, Miguel Vazquez
A user guide for the online exploration and visualization of PCAWG data. Nature communications 11 (1) (2020)
David T Miller, Isidro Cortes-Ciriano, Nischalan Pillay, Angela C Hirbe, Matija Snuderl, Marilyn M Bui, Katherine Piculell, Alyaa Al-Ibraheemi, Brendan C Dickson, Jesse Hart, Kevin Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Yoshihiro Nishida, Nicole J Ullrich, Xia Wang, Peter J Park, Adrienne M Flanagan
Genomics of MPNST (GeM) Consortium: Rationale and Study Design for Multi-Omic Characterization of NF1-Associated and Sporadic MPNSTs. Genes 11 (4) (2020)
Doga C Gulhan, Jake June-Koo Lee, Giorgio E M Melloni, Isidro Cortes-Ciriano, Peter J Park
Detecting the mutational signature of homologous recombination deficiency in clinical samples. Nature genetics 51 (5) (2019)
Craig L Bohrson, Alison R Barton, Michael A Lodato, Rachel E Rodin, Lovelace J Luquette, Vinay V Viswanadham, Doga C Gulhan, Isidro Cortes-Ciriano, Maxwell A Sherman, Minseok Kwon, Michael E Coulter, Alon Galor, Christopher A Walsh, Peter J Park
Linked-read analysis identifies mutations in single-cell DNA-sequencing data. Nature genetics 51 (4) (2019)
Isidro Cortes-Ciriano, Andreas Bender
KekuleScope: prediction of cancer cell line sensitivity and compound potency using convolutional neural networks trained on compound images. Journal of cheminformatics 11 (1) (2019)
Isidro Cortes-Ciriano, Andreas Bender
Reliable Prediction Errors for Deep Neural Networks Using Test-Time Dropout. Journal of chemical information and modeling 59 (7) (2019)
Isidro Cortes-Ciriano, Andreas Bender
Deep Confidence: A Computationally Efficient Framework for Calculating Reliable Prediction Errors for Deep Neural Networks. Journal of chemical information and modeling 59 (3) (2018)
Isidro Cortes-Ciriano, Nicholas C Firth, Andreas Bender, Oliver Watson
Discovering Highly Potent Molecules from an Initial Set of Inactives Using Iterative Screening. Journal of chemical information and modeling 58 (9) (2018)
Michael J McConnell, John V Moran, Alexej Abyzov, Schahram Akbarian, Taejeong Bae, Isidro Cortes-Ciriano, Jennifer A Erwin, Liana Fasching, Diane A Flasch, Donald Freed, Javier Ganz, Andrew E Jaffe, Kenneth Y Kwan, Minseok Kwon, Michael A Lodato, Ryan E Mills, Apua C M Paquola, Rachel E Rodin, Chaggai Rosenbluh, Nenad Sestan, Maxwell A Sherman, Joo-Heon Shin, Saera Song, Richard E Straub, Jeremy Thorpe, Daniel R Weinberger, Alexander Eckehart Urban, Bo Zhou, Fred H Gage, Thomas Lehner, Geetha Senthil, Christopher A Walsh, Andrew Chess, Eric Courchesne, Joseph G Gleeson, Jeffrey M Kidd, Peter J Park, Jonathan Pevsner, Flora M Vaccarino, null null
Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network. Science (New York, N.Y.) 356 (6336) (2017)

Isidro Cortes-Ciriano.css-eqlu8i{font-size:small;padding-left:4px;} (I Cortés-Ciriano, Isidro Cortés-Ciriano)

Publication Activity (10 Years)

Top Topics

Top Venues

Isidro Cortes-Ciriano (I Cortés-Ciriano, Isidro Cortés-Ciriano)