Bas van Steensel

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 33

Top Topics

Transcription Factor

Histone Deacetylase

Dna Damage Response

Top Venues

Nature biotechnology

Nucleic acids research

bioRxiv : the preprint server for biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Ruben Schep, Max Trauernicht, Xabier Vergara, Anoek Friskes, Ben Morris, Sebastian Gregoricchio, Stefano G Manzo, Wilbert Zwart, Roderick L Beijersbergen, René H Medema, Bas van Steensel
Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing. Nucleic acids research 52 (15) (2024)
Ruben Schep, Max Trauernicht, Xabier Vergara, Anoek Friskes, Ben Morris, Sebastian Gregoricchio, Stefano G Manzo, Wilbert Zwart, Roderick L Beijersbergen, René H Medema, Bas van Steensel
Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing. Nucleic acids research (2024)
Ruben Schep, Max Trauernicht, Xabier Vergara, Anoek Friskes, Ben Morris, Sebastian Gregoricchio, Stefano G Manzo, Wilbert Zwart, Roderick L Beijersbergen, René H Medema, Bas van Steensel
Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing. Nucleic acids research 52 (15) (2024)
Omid Gholamalamdari, Tom van Schaik, Yuchuan Wang, Pradeep Kumar, Liguo Zhang, Yang Zhang, Gabriela A Hernandez Gonzalez, Athanasios E Vouzas, Peiyao A Zhao, David M Gilbert, Jian Ma, Bas van Steensel, Andrew S Belmont
Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function. bioRxiv : the preprint server for biology (2024)
Nicolas Mathis, Ahmed Allam, András Tálas, Lucas Kissling, Elena Benvenuto, Lukas Schmidheini, Ruben Schep, Tanav Damodharan, Zsolt Balázs, Sharan Janjuha, Eleonora I Ioannidi, Desirée Böck, Bas van Steensel, Michael Krauthammer, Gerald Schwank
Publisher Correction: Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature biotechnology (2024)
Nicolas Mathis, Ahmed Allam, András Tálas, Lucas Kissling, Elena Benvenuto, Lukas Schmidheini, Ruben Schep, Tanav Damodharan, Zsolt Balázs, Sharan Janjuha, Eleonora I Ioannidi, Desirée Böck, Bas van Steensel, Michael Krauthammer, Gerald Schwank
Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature biotechnology (2024)
Xabier Vergara, Anna G Manjón, Marcel de Haas, Ben Morris, Ruben Schep, Christ Leemans, Anoek Friskes, Roderick L Beijersbergen, Mathijs A Sanders, René H Medema, Bas van Steensel
Widespread chromatin context-dependencies of DNA double-strand break repair proteins. Nature communications 15 (1) (2024)
Nicolas Mathis, Ahmed Allam, András Tálas, Lucas Kissling, Elena Benvenuto, Lukas Schmidheini, Ruben Schep, Tanav Damodharan, Zsolt Balázs, Sharan Janjuha, Eleonora I Ioannidi, Desirée Böck, Bas van Steensel, Michael Krauthammer, Gerald Schwank
Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature biotechnology (2024)
Ruben Schep, Max Trauernicht, Xabier Vergara, Anoek Friskes, Ben Morris, Sebastian Gregoricchio, Stefano G Manzo, Wilbert Zwart, Roderick L Beijersbergen, René H Medema, Bas van Steensel
Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing. Nucleic acids research 52 (15) (2024)
Xabier Vergara, Anna G Manjón, Marcel de Haas, Ben Morris, Ruben Schep, Christ Leemans, Anoek Friskes, Roderick L Beijersbergen, Mathijs A Sanders, René H Medema, Bas van Steensel
Widespread chromatin context-dependencies of DNA double-strand break repair proteins. Nature communications 15 (1) (2024)
Max Trauernicht, Teodora Filipovska, Chaitanya Rastogi, Bas van Steensel
Optimized reporters for multiplexed detection of transcription factor activity. bioRxiv : the preprint server for biology (2024)
Pradeep Kumar, Omid Gholamalamdari, Yang Zhang, Liguo Zhang, Anastassiia Vertii, Tom van Schaik, Daan Peric-Hupkes, Takayo Sasaki, David M Gilbert, Bas van Steensel, Jian Ma, Paul D Kaufman, Andrew S Belmont
Nucleolus and centromere Tyramide Signal Amplification-Seq reveals variable localization of heterochromatin in different cell types. Communications biology 7 (1) (2024)
Nicolas Mathis, Ahmed Allam, András Tálas, Lucas Kissling, Elena Benvenuto, Lukas Schmidheini, Ruben Schep, Tanav Damodharan, Zsolt Balázs, Sharan Janjuha, Eleonora I Ioannidi, Desirée Böck, Bas van Steensel, Michael Krauthammer, Gerald Schwank
Publisher Correction: Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature biotechnology (2024)
Xabier Vergara, Anna G Manjón, Marcel de Haas, Ben Morris, Ruben Schep, Christ Leemans, Anoek Friskes, Roderick L Beijersbergen, Mathijs A Sanders, René H Medema, Bas van Steensel
Widespread chromatin context-dependencies of DNA double-strand break repair proteins. Nature communications 15 (1) (2024)
Nicolas Mathis, Ahmed Allam, András Tálas, Lucas Kissling, Elena Benvenuto, Lukas Schmidheini, Ruben Schep, Tanav Damodharan, Zsolt Balázs, Sharan Janjuha, Eleonora I Ioannidi, Desirée Böck, Bas van Steensel, Michael Krauthammer, Gerald Schwank
Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature biotechnology (2024)
Nicolas Mathis, Ahmed Allam, András Tálas, Lucas Kissling, Elena Benvenuto, Lukas Schmidheini, Ruben Schep, Tanav Damodharan, Zsolt Balázs, Sharan Janjuha, Eleonora I Ioannidi, Desirée Böck, Bas van Steensel, Michael Krauthammer, Gerald Schwank
Publisher Correction: Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature biotechnology (2024)
Xabier Vergara, Anna G Manjón, Marcel de Haas, Ben Morris, Ruben Schep, Christ Leemans, Anoek Friskes, Roderick L Beijersbergen, Mathijs A Sanders, René H Medema, Bas van Steensel
Widespread chromatin context-dependencies of DNA double-strand break repair proteins. Nature communications 15 (1) (2024)
Max Trauernicht, Teodora Filipovska, Chaitanya Rastogi, Bas van Steensel
Optimized reporters for multiplexed detection of transcription factor activity. bioRxiv : the preprint server for biology (2024)
Nicolas Mathis, Ahmed Allam, András Tálas, Lucas Kissling, Elena Benvenuto, Lukas Schmidheini, Ruben Schep, Tanav Damodharan, Zsolt Balázs, Sharan Janjuha, Eleonora I Ioannidi, Desirée Böck, Bas van Steensel, Michael Krauthammer, Gerald Schwank
Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature biotechnology (2024)
Ruben Schep, Max Trauernicht, Xabier Vergara, Anoek Friskes, Ben Morris, Sebastian Gregoricchio, Stefano G Manzo, Wilbert Zwart, Roderick L Beijersbergen, René H Medema, Bas van Steensel
Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing. Nucleic acids research (2024)
Omid Gholamalamdari, Tom van Schaik, Yuchuan Wang, Pradeep Kumar, Liguo Zhang, Yang Zhang, Gabriela A Hernandez Gonzalez, Athanasios E Vouzas, Peiyao A Zhao, David M Gilbert, Jian Ma, Bas van Steensel, Andrew S Belmont
Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function. bioRxiv : the preprint server for biology (2024)
Vincent D FitzPatrick, Christ Leemans, Joris van Arensbergen, Bas van Steensel, Harmen J Bussemaker
Defining the fine structure of promoter activity on a genome-wide scale with CISSECTOR. Nucleic acids research (2023)
Pradeep Kumar, Omid Gholamalamdari, Yang Zhang, Liguo Zhang, Anastassiia Vertii, Tom van Schaik, Daan Peric-Hupkes, Takayo Sasaki, David M Gilbert, Bas van Steensel, Jian Ma, Paul D Kaufman, Andrew S Belmont
Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types. bioRxiv : the preprint server for biology (2023)
Max Trauernicht, Chaitanya Rastogi, Stefano G Manzo, Harmen J Bussemaker, Bas van Steensel
Optimisation of TP53 reporters by systematic dissection of synthetic TP53 response elements. Nucleic acids research (2023)
Stamatis Papathanasiou, Nikos A Mynhier, Shiwei Liu, Gregory J Brunette, Ema Stokasimov, Etai Jacob, Lanting Li, Caroline Comenho, Bas van Steensel, Jason D Buenrostro, Cheng-Zhong Zhang, David Pellman
Heritable transcriptional defects from aberrations of nuclear architecture. Nature (2023)
Tom van Schaik, Ning Qing Liu, Stefano G Manzo, Daan Peric-Hupkes, Elzo de Wit, Bas van Steensel
CTCF and cohesin promote focal detachment of DNA from the nuclear lamina. Genome biology 23 (1) (2022)
Jessica Zuin, Gregory Roth, Yinxiu Zhan, Julie Cramard, Josef Redolfi, Ewa Piskadlo, Pia Mach, Mariya Kryzhanovska, Gergely Tihanyi, Hubertus Kohler, Mathias Eder, Christ Leemans, Bas van Steensel, Peter Meister, Sebastien Smallwood, Luca Giorgetti
Nonlinear control of transcription through enhancer-promoter interactions. Nature 604 (7906) (2022)
Tom van Schaik, Stefano G Manzo, Athanasios E Vouzas, Ning Qing Liu, Hans Teunissen, Elzo de Wit, David M Gilbert, Bas van Steensel
Dynamic chromosomal interactions and control of heterochromatin positioning by Ki-67. EMBO reports 23 (12) (2022)
Claire Hoencamp, Olga Dudchenko, Ahmed M O Elbatsh, Sumitabha Brahmachari, Jonne A Raaijmakers, Tom van Schaik, Ángela Sedeño Cacciatore, Vinícius de Godoi Contessoto, Roy G H P van Heesbeen, Bram van den Broek, Aditya N Mhaskar, Hans Teunissen, Brian Glenn St Hilaire, David Weisz, Arina D Omer, Melanie Pham, Zane Colaric, Zhenzhen Yang, Suhas S P Rao, Namita Mitra, Christopher G Lui, Weijie Yao, Ruqayya Khan, Leonid L Moroz, Andrea Kohn, Judy St Leger, Alexandria Mena, Karen Holcroft, Maria Cristina Gambetta, Fabian Lim, Emma Kirsten Farley, Nils Stein, Alexander Haddad, Daniel Chauss, Ayse Sena Mutlu, Meng C Wang, Neil David Young, Evin Hildebrandt, Hans H Cheng, Christopher J Knight, Theresa L U Burnham, Kevin A Hovel, Andrew J Beel, Pierre-Jean Mattei, Roger D Kornberg, Wesley C Warren, Veronica F Hinman, José Luis Gómez-Skarmeta, Veronica F Hinman, Kerstin Lindblad-Toh, Federica Di Palma, Kazuhiro Maeshima, Asha S Multani, Sen Pathak, Liesl Nel-Themaat, Richard R Behringer, Parwinder Kaur, René H Medema, Bas van Steensel, Elzo de Wit, José Nelson Onuchic, Michele Di Pierro, Erez Lieberman Aiden, Benjamin D Rowland
3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science (New York, N.Y.) 372 (6545) (2021)
Bas van Steensel, Eileen E M Furlong
The role of transcription in shaping the spatial organization of the genome. Nature reviews. Molecular cell biology 20 (6) (2020)
Laura Brueckner, Peiyao A Zhao, Tom van Schaik, Christ Leemans, Jiao Sima, Daniel Peric-Hupkes, David M Gilbert, Bas van Steensel
Local rewiring of genome-nuclear lamina interactions by transcription. The EMBO journal 39 (6) (2020)
Tom van Schaik, Mabel Vos, Daan Peric-Hupkes, Patrick Hn Celie, Bas van Steensel
Cell cycle dynamics of lamina-associated DNA. EMBO reports 21 (11) (2020)
Joris H Janssen, Ludo Pagie, Vincent D FitzPatrick, Marcel de Haas, Marijke P Baltissen, Federico Comoglio, Robin H van der Weide, Hans Teunissen, Urmo Võsa, Lude Franke, Elzo de Wit, Michiel Vermeulen, Harmen J Bussemaker, Bas van Steensel
High-throughput identification of human SNPs affecting regulatory element activity. Nature genetics 51 (7) (2019)