Peter J Park

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 86

Top Topics

Urinary Incontinence

Peripheral Nerve

Dna Damage Response

Top Venues

Nature genetics

Nature communications

Cancer discovery

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics 56 (5) (2024)
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungström, Peter J Park
Accurate and sensitive mutational signature analysis with MuSiCal. Nature genetics 56 (3) (2024)
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungström, Peter J Park
Accurate and sensitive mutational signature analysis with MuSiCal. Nature genetics 56 (3) (2024)
Yifan Zhao, Lovelace J Luquette, Alexander D Veit, Xiaochen Wang, Ruibin Xi, Vinayak V Viswanadham, Diane D Shao, Christopher A Walsh, Hong Wei Yang, Mark D Johnson, Peter J Park
High-resolution detection of copy number alterations in single cells with HiScanner. bioRxiv : the preprint server for biology (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungström, Peter J Park
Accurate and sensitive mutational signature analysis with MuSiCal. Nature genetics 56 (3) (2024)
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungström, Peter J Park
Accurate and sensitive mutational signature analysis with MuSiCal. Nature genetics (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics 56 (5) (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics 56 (5) (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics (2024)
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungström, Peter J Park
Accurate and sensitive mutational signature analysis with MuSiCal. Nature genetics (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics 56 (5) (2024)
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungström, Peter J Park
Accurate and sensitive mutational signature analysis with MuSiCal. Nature genetics 56 (3) (2024)
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungström, Peter J Park
Accurate and sensitive mutational signature analysis with MuSiCal. Nature genetics (2024)
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungström, Peter J Park
Accurate and sensitive mutational signature analysis with MuSiCal. Nature genetics 56 (3) (2024)
Sehi L' Yi, Dominika Maziec, Victoria Stevens, Trevor Manz, Alexander Veit, Michele Berselli, Peter J Park, Dominik Głodzik, Nils Gehlenborg
Chromoscope: interactive multiscale visualization for structural variation in human genomes. Nature methods (2023)
McKinzie A Garrison, Yeongjun Jang, Taejeong Bae, Adriana Cherskov, Sarah B Emery, Liana Fasching, Attila Jones, John B Moldovan, Cindy Molitor, Sirisha Pochareddy, Mette A Peters, Joo-Heon Shin, Yifan Wang, Xiaoxu Yang, Schahram Akbarian, Andrew Chess, Fred H Gage, Joseph G Gleeson, Jeffrey M Kidd, Michael J McConnell, Ryan E Mills, John V Moran, Peter J Park, Nenad Sestan, Alexander Eckehart Urban, Flora M Vaccarino, Christopher A Walsh, Daniel R Weinberger, Sarah J Wheelan, Alexej Abyzov, null null
Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases. Scientific data 10 (1) (2023)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Jake June-Koo Lee, Youngsook Lucy Jung, Taek-Chin Cheong, Jose Espejo Valle-Inclan, Chong Chu, Doga C Gulhan, Viktor Ljungström, Hu Jin, Vinayak V Viswanadham, Emma V Watson, Isidro Cortes-Ciriano, Stephen J Elledge, Roberto Chiarle, David Pellman, Peter J Park
ERα-associated translocations underlie oncogene amplifications in breast cancer. Nature (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Hong Wei Yang, Semin Lee, Bethany C Berry, Dejun Yang, Shaokuan Zheng, Rona S Carroll, Peter J Park, Mark D Johnson
A role for mutations in AK9 and other genes affecting ependymal cells in idiopathic normal pressure hydrocephalus. Proceedings of the National Academy of Sciences of the United States of America 120 (51) (2023)
Chong Chu, Eric W Lin, Antuan Tran, Hu Jin, Natalie I Ho, Alexander Veit, Isidro Cortes-Ciriano, Kathleen H Burns, David T Ting, Peter J Park
The landscape of human SVA retrotransposons. Nucleic acids research (2023)
Rachel E Rodin, Yanmei Dou, Minseok Kwon, Maxwell A Sherman, Alissa M D'Gama, Ryan N Doan, Lariza M Rento, Kelly M Girskis, Craig L Bohrson, Sonia N Kim, Ajay Nadig, Lovelace J Luquette, Doga C Gulhan, null null, Peter J Park, Christopher A Walsh
Author Correction: The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing. Nature neuroscience (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller
Genomic patterns of malignant peripheral nerve sheath tumor (MPNST) evolution correlate with clinical outcome and are detectable in cell-free DNA. Cancer discovery (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Hong Wei Yang, Semin Lee, Bethany C Berry, Dejun Yang, Shaokuan Zheng, Rona S Carroll, Peter J Park, Mark D Johnson
A role for mutations in AK9 and other genes affecting ependymal cells in idiopathic normal pressure hydrocephalus. Proceedings of the National Academy of Sciences of the United States of America 120 (51) (2023)
Hong Wei Yang, Semin Lee, Bethany C Berry, Dejun Yang, Shaokuan Zheng, Rona S Carroll, Peter J Park, Mark D Johnson
A role for mutations in AK9 and other genes affecting ependymal cells in idiopathic normal pressure hydrocephalus. Proceedings of the National Academy of Sciences of the United States of America 120 (51) (2023)
Adrian Mariño-Enriquez, Jan Philipp Novotny, Doga C Gulhan, Isabella Klooster, Antuan V Tran, Macy Kasbo, Meijun Z Lundberg, Wen-Bin Ou, Derrick L Tao, Daniel F Pilco-Janeta, Victor Y Mao, Frank T Zenke, Brittaney A Leeper, Prafulla C Gokhale, Glenn S Cowley, Laurence H Baker, Karla V Ballman, David E Root, Joachim Albers, Peter J Park, Suzanne George, Jonathan A Fletcher
Hyper-Dependence on NHEJ Enables Synergy Between DNA-PK Inhibitors and Low-Dose Doxorubicin in Leiomyosarcoma. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Teng Gao, Maria Eleni Kastriti, Viktor Ljungström, Andreas Heinzel, Arthur S Tischler, Rainer Oberbauer, Po-Ru Loh, Igor Adameyko, Peter J Park, Peter V Kharchenko
A pan-tissue survey of mosaic chromosomal alterations in 948 individuals. Nature genetics (2023)
Hong Wei Yang, Semin Lee, Bethany C Berry, Dejun Yang, Shaokuan Zheng, Rona S Carroll, Peter J Park, Mark D Johnson
A role for mutations in AK9 and other genes affecting ependymal cells in idiopathic normal pressure hydrocephalus. Proceedings of the National Academy of Sciences of the United States of America 120 (51) (2023)
Sonia Nan Kim, Vinayak V Viswanadham, Ryan N Doan, Yanmei Dou, Sara Bizzotto, Sattar Khoshkhoo, August Yue Huang, Rebecca Yeh, Brian Chhouk, Alex Truong, Kathleen M Chappell, Marc Beaudin, Alison R Barton, Shyam K Akula, Lariza Rento, Michael A Lodato, Javier Ganz, Ryan A Szeto, Pengpeng Li, Jessica W Tsai, Robert Sean Hill, Peter J Park, Christopher A Walsh
Cell lineage analysis with somatic mutations reveals late divergence of neuronal cell types and cortical areas in human cerebral cortex. bioRxiv : the preprint server for biology (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester, Martin Santamarina, Young Seok Ju, Javier Temes, Daniel Garcia Souto, Harald Detering, Yilong Li, Jorge Rodriguez-Castro, Ana Dueso-Barroso, Alicia L Bruzos, Stefan C Dentro, Miguel G Blanco, Gianmarco Contino, Daniel Ardeljan, Marta Tojo, Nicola D Roberts, Sonia Zumalave, Paul A W Edwards, Joachim Weischenfeldt, Montserrat Puiggròs, Zechen Chong, Ken Chen, Eunjung Alice Lee, Jeremiah A Wala, Keiran M Raine, Adam Butler, Sebastian M Waszak, Fábio C P Navarro, Steven E Schumacher, Jean Monlong, Francesco Maura, Niccolo Bolli, Guillaume Bourque, Mark Gerstein, Peter J Park, David C Wedge, Rameen Beroukhim, David Torrents, Jan O Korbel, Iñigo Martincorena, Rebecca C Fitzgerald, Peter Van Loo, Haig H Kazazian, Kathleen H Burns, null null, Peter J Campbell, Jose M C Tubio, null null
Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nature genetics (2023)
Jinkuk Kim, Sijae Woo, Claudio M de Gusmao, Boxun Zhao, Diana H Chin, Renata L DiDonato, Minh A Nguyen, Tojo Nakayama, Chunguang April Hu, Aubrie Soucy, Ashley Kuniholm, Jennifer Karlin Thornton, Olivia Riccardi, Danielle A Friedman, Christelle Moufawad El Achkar, Zane S Dash, Laura Cornelissen, Carolina Donado, Kamli N W Faour, Lynn W Bush, Victoria Suslovitch, Claudia Lentucci, Peter J Park, Eunjung Alice Lee, Al Patterson, Anthony A Philippakis, Brad Margus, Charles B Berde, Timothy W Yu
A framework for individualized splice-switching oligonucleotide therapy. Nature (2023)
Isidro Cortes-Ciriano, Christopher D Steele, Katherine Piculell, Alyaa Al-Ibraheemi, Vanessa Eulo, Marilyn M Bui, Aikaterini Chatzipli, Brendan C Dickson, Dana C Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B Jones, Justin T Jordan, Raymond H Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Z Proszek, Jonathan Serrano, R Taylor Sundby, Jeffrey J Szymanski, Nicole J Ullrich, David H Viskochil, Xia Wang, Matija Snuderl, Peter J Park, Adrienne M Flanagan, Angela C Hirbe, Nischalan Pillay, David T Miller, null null
Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer discovery 13 (3) (2023)
Sarah B Reiff, Andrew J Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado, Soohyun Lee, Alexander D Veit, Alexander K Balashov, Carl Vitzthum, William Ronchetti, Kent M Pitman, Jeremy Johnson, Shannon R Ehmsen, Peter Kerpedjiev, Nezar Abdennur, Maxim Imakaev, Serkan Utku Öztürk, Uğur Çamoğlu, Leonid A Mirny, Nils Gehlenborg, Burak Han Alver, Peter J Park
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data. Nature communications 13 (1) (2022)
Lovelace J Luquette, Peter J Park
Somatic mutation accumulation seen through a single-molecule lens. Cell research 31 (9) (2022)
Lovelace J Luquette, Michael B Miller, Zinan Zhou, Craig L Bohrson, Yifan Zhao, Hu Jin, Doga Gulhan, Javier Ganz, Sara Bizzotto, Samantha L Kirkham, Tino Hochepied, Claude Libert, Alon Galor, Junho Kim, Michael A Lodato, Juan I Garaycoechea, Charles Gawad, Jay West, Christopher A Walsh, Peter J Park
Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements. Nature genetics 54 (10) (2022)
Lina Sieverling, Chen Hong, Sandra D Koser, Philip Ginsbach, Kortine Kleinheinz, Barbara Hutter, Delia M Braun, Isidro Cortes-Ciriano, Ruibin Xi, Rolf Kabbe, Peter J Park, Roland Eils, Matthias Schlesner, null null, Benedikt Brors, Karsten Rippe, David T W Jones, Lars Feuerbach, null null
Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer. Nature communications 13 (1) (2022)
Sarah B Reiff, Andrew J Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado, Soohyun Lee, Alexander D Veit, Alexander K Balashov, Carl Vitzthum, William Ronchetti, Kent M Pitman, Jeremy Johnson, Shannon R Ehmsen, Peter Kerpedjiev, Nezar Abdennur, Maxim Imakaev, Serkan Utku Öztürk, Uğur Çamoğlu, Leonid A Mirny, Nils Gehlenborg, Burak Han Alver, Peter J Park
Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data. Nature communications 13 (1) (2022)
Felipe Batalini, Doga C Gulhan, Victor Y Mao, Antuan V Tran, Madeline Polak, Niya Xiong, Nabihah Tayob, Nadine M Tung, Eric P Winer, Erica L Mayer, Stian Knappskog, Per Eystein Lønning, Ursula A Matulonis, Panagiotis A Konstantinopoulos, David B Solit, Helen H Won, Hans Petter Eikesdal, Peter J Park, Gerburg M Wulf
Mutational Signature 3 Detected from Clinical Panel Sequencing is Associated with Responses to Olaparib in Breast and Ovarian Cancers. Clinical cancer research : an official journal of the American Association for Cancer Research 28 (21) (2022)
Zijie Jin, Wenjian Huang, Ning Shen, Juan Li, Xiaochen Wang, Jiqiao Dong, Peter J Park, Ruibin Xi
Single-cell gene fusion detection by scFusion. Nature communications 13 (1) (2022)
Mihir Rajurkar, Aparna R Parikh, Alexander Solovyov, Eunae You, Anupriya S Kulkarni, Chong Chu, Katherine H Xu, Christopher Jaicks, Martin S Taylor, Connie Wu, Katherine A Alexander, Charly R Good, Annamaria Szabolcs, Stefanie Gerstberger, Antuan V Tran, Nova Xu, Richard Y Ebright, Emily E Van Seventer, Kevin D Vo, Eric C Tai, Chenyue Lu, Jasmin Joseph-Chazan, Michael J Raabe, Linda T Nieman, Niyati Desai, Kshitij S Arora, Matteo Ligorio, Vishal Thapar, Limor Cohen, Padric M Garden, Yasmeen Senussi, Hui Zheng, Jill N Allen, Lawrence S Blaszkowsky, Jeffrey W Clark, Lipika Goyal, Jennifer Y Wo, David P Ryan, Ryan B Corcoran, Vikram Deshpande, Miguel N Rivera, Martin J Aryee, Theodore S Hong, Shelley L Berger, David R Walt, Kathleen H Burns, Peter J Park, Benjamin D Greenbaum, David Tsai Ting
Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer. Cancer discovery 12 (6) (2022)
Rachel E Rodin, Yanmei Dou, Minseok Kwon, Maxwell A Sherman, Alissa M D'Gama, Ryan N Doan, Lariza M Rento, Kelly M Girskis, Craig L Bohrson, Sonia N Kim, Ajay Nadig, Lovelace J Luquette, Doga C Gulhan, null null, Peter J Park, Christopher A Walsh
The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing. Nature neuroscience 24 (2) (2021)
Dhawal Jain, Chong Chu, Burak Han Alver, Soohyun Lee, Eunjung Alice Lee, Peter J Park
HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data. Bioinformatics (Oxford, England) 37 (8) (2021)
Sara Bizzotto, Yanmei Dou, Javier Ganz, Ryan N Doan, Minseok Kwon, Craig L Bohrson, Sonia Nan Kim, Taejeong Bae, Alexej Abyzov, null null, Peter J Park, Christopher A Walsh
Landmarks of human embryonic development inscribed in somatic mutations. Science (New York, N.Y.) 371 (6535) (2021)
Chong Chu, Rebeca Borges-Monroy, Vinayak V Viswanadham, Soohyun Lee, Heng Li, Eunjung Alice Lee, Peter J Park
Comprehensive identification of transposable element insertions using multiple sequencing technologies. Nature communications 12 (1) (2021)
Maxwell A Sherman, Rachel E Rodin, Giulio Genovese, Caroline Dias, Alison R Barton, Ronen E Mukamel, Bonnie Berger, Peter J Park, Christopher A Walsh, Po-Ru Loh
Large mosaic copy number variations confer autism risk. Nature neuroscience 24 (2) (2021)
Alessandro Rigano, Shannon Ehmsen, Serkan Utku Öztürk, Joel Ryan, Alexander Balashov, Mathias Hammer, Koray Kirli, Ulrike Boehm, Claire M Brown, Karl Bellve, James J Chambers, Andrea Cosolo, Robert A Coleman, Orestis Faklaris, Kevin E Fogarty, Thomas Guilbert, Anna B Hamacher, Michelle S Itano, Daniel P Keeley, Susanne Kunis, Judith Lacoste, Alex Laude, Willa Y Ma, Marco Marcello, Paula Montero Llopis, Glyn Nelson, Roland Nitschke, Jaime A Pimentel, Stefanie Weidtkamp-Peters, Peter J Park, Burak H Alver, David Grünwald, Caterina Strambio-De-Castilla
Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications. Nature methods 18 (12) (2021)
Joshua H Cook, Giorgio E M Melloni, Doga C Gulhan, Peter J Park, Kevin M Haigis
The origins and genetic interactions of KRAS mutations are allele- and tissue-specific. Nature communications 12 (1) (2021)
Anniina Farkkila, Alfredo Rodríguez, Jaana Oikkonen, Doga C Gulhan, Huy Nguyen, Julieta Domínguez, Sandra Ramos, Caitlin E Mills, Fernando Pérez-Villatoro, Jean-Bernard Lazaro, Jia Zhou, Connor S Clairmont, Lisa A Moreau, Peter J Park, Peter Karl Sorger, Sampsa Hautaniemi, Sara Frías, Alan D' Andrea
Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1-Deficient Cells. Cancer research 81 (10) (2021)
Isidro Cortés-Ciriano, Doga C Gulhan, Jake June-Koo Lee, Giorgio E M Melloni, Peter J Park
Computational analysis of cancer genome sequencing data. Nature reviews. Genetics (2021)
Rebeca Borges-Monroy, Chong Chu, Caroline Dias, Jaejoon Choi, Soohyun Lee, Yue Gao, Taehwan Shin, Peter J Park, Christopher A Walsh, Eunjung Alice Lee
Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder. Mobile DNA 12 (1) (2021)
Anniina Farkkila, Doga C Gulhan, Julia Casado, Connor A Jacobson, Huy Nguyen, Bose Kochupurakkal, Zoltan Maliga, Clarence Yapp, Yu-An Chen, Denis Schapiro, Yinghui Zhou, Julie R Graham, Bruce J Dezube, Pamela N Munster, Sandro Santagata, Elizabeth Garcia, Scott Rodig, Ana Lako, Dipanjan Chowdhury, Geoffrey I Shapiro, Ursula A Matulonis, Peter J Park, Sampsa Hautaniemi, Peter Karl Sorger, Elizabeth M Swisher, Alan D' Andrea, Panagiotis A Konstantinopoulos
Author Correction: Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer. Nature communications 11 (1) (2020)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics 52 (3) (2020)
Lina Sieverling, Chen Hong, Sandra D Koser, Philip Ginsbach, Kortine Kleinheinz, Barbara Hutter, Delia M Braun, Isidro Cortes-Ciriano, Ruibin Xi, Rolf Kabbe, Peter J Park, Roland Eils, Matthias Schlesner, null null, Benedikt Brors, Karsten Rippe, David T W Jones, Lars Feuerbach, null null
Genomic footprints of activated telomere maintenance mechanisms in cancer. Nature communications 11 (1) (2020)
Jae Won Yun, Lixing Yang, Hye-Young Park, Chang-Woo Lee, Hongui Cha, Hyun-Tae Shin, Ka-Won Noh, Yoon-La Choi, Woong-Yang Park, Peter J Park
Dysregulation of cancer genes by recurrent intergenic fusions. Genome biology 21 (1) (2020)
Isidro Cortes-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry A Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, null null, Peter J Park, null null
Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature genetics (2020)
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