Joshua Z Levin

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 34

Top Venues

Nature

Nature aging

Development (Cambridge, England)

Nature biotechnology

Massachusetts Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Massachusetts Institute of Technology

United States

PHD :: Biology

Publications

Noelia Antón-Bolaños, Irene Faravelli, Tyler Faits, Sophia Andreadis, Rahel Kastli, Sebastiano Trattaro, Xian Adiconis, Anqi Wei, Abhishek Sampath Kumar, Daniela Di Bella, Matthew Tegtmeyer, Ralda Nehme, Joshua Z Levin, Aviv Regev, Paola Arlotta
Brain Chimeroids reveal individual susceptibility to neurotoxic triggers. Nature 631 (8019) (2024)
Noelia Antón-Bolaños, Irene Faravelli, Tyler Faits, Sophia Andreadis, Rahel Kastli, Sebastiano Trattaro, Xian Adiconis, Anqi Wei, Abhishek Sampath Kumar, Daniela Di Bella, Matthew Tegtmeyer, Ralda Nehme, Joshua Z Levin, Aviv Regev, Paola Arlotta
Brain Chimeroids reveal individual susceptibility to neurotoxic triggers. Nature 631 (8019) (2024)
Sean K Simmons, Xian Adiconis, Nathan Haywood, Jacob Parker, Zechuan Lin, Zhixiang Liao, Idil Tuncali, Aziz M Al'Khafaji, Asa Shin, Karthik A Jagadeesh, Kirk Gosik, Michael Gatzen, Jonathan T Smith, Daniel N El Kodsi, Yuliya Kuras, Clare Baecher-Allan, Geidy E Serrano, Thomas G Beach, Kiran V Garimella, Orit Rozenblatt-Rosen, Aviv Regev, Xianjun Dong, Clemens R Scherzer, Joshua Z Levin
Experimental and Computational Methods for Allelic Imbalance Analysis from Single-Nucleus RNA-seq Data. bioRxiv : the preprint server for biology (2024)
Noelia Antón-Bolaños, Irene Faravelli, Tyler Faits, Sophia Andreadis, Rahel Kastli, Sebastiano Trattaro, Xian Adiconis, Anqi Wei, Abhishek Sampath Kumar, Daniela Di Bella, Matthew Tegtmeyer, Ralda Nehme, Joshua Z Levin, Aviv Regev, Paola Arlotta
Brain Chimeroids reveal individual susceptibility to neurotoxic triggers. Nature 631 (8019) (2024)
Bridget Elaine LaMonica Ostrem, Nuria Domínguez-Iturza, Jeffrey A Stogsdill, Tyler Faits, Kwanho Kim, Joshua Z Levin, Paola Arlotta
Fetal brain response to maternal inflammation requires microglia. Development (Cambridge, England) 151 (10) (2024)
Sean K Simmons, Xian Adiconis, Nathan Haywood, Jacob Parker, Zechuan Lin, Zhixiang Liao, Idil Tuncali, Aziz M Al'Khafaji, Asa Shin, Karthik A Jagadeesh, Kirk Gosik, Michael Gatzen, Jonathan T Smith, Daniel N El Kodsi, Yuliya Kuras, Clare Baecher-Allan, Geidy E Serrano, Thomas G Beach, Kiran V Garimella, Orit Rozenblatt-Rosen, Aviv Regev, Xianjun Dong, Clemens R Scherzer, Joshua Z Levin
Experimental and Computational Methods for Allelic Imbalance Analysis from Single-Nucleus RNA-seq Data. bioRxiv : the preprint server for biology (2024)
Bridget Elaine LaMonica Ostrem, Nuria Domínguez-Iturza, Jeffrey A Stogsdill, Tyler Faits, Kwanho Kim, Joshua Z Levin, Paola Arlotta
Fetal brain response to maternal inflammation requires microglia. Development (Cambridge, England) 151 (10) (2024)
Noelia Antón-Bolaños, Irene Faravelli, Tyler Faits, Sophia Andreadis, Rahel Kastli, Sebastiano Trattaro, Xian Adiconis, Anqi Wei, Abhishek Sampath Kumar, Daniela Di Bella, Matthew Tegtmeyer, Ralda Nehme, Joshua Z Levin, Aviv Regev, Paola Arlotta
Brain Chimeroids reveal individual susceptibility to neurotoxic triggers. Nature 631 (8019) (2024)
Bridget Elaine LaMonica Ostrem, Nuria Domínguez-Iturza, Jeffrey A Stogsdill, Tyler Faits, Kwanho Kim, Joshua Z Levin, Paola Arlotta
Fetal brain response to maternal inflammation requires microglia. Development (Cambridge, England) 151 (10) (2024)
Bridget Elaine LaMonica Ostrem, Nuria Domínguez-Iturza, Jeffrey A Stogsdill, Tyler Faits, Kwanho Kim, Joshua Z Levin, Paola Arlotta
Fetal brain response to maternal inflammation requires microglia. Development (Cambridge, England) 151 (10) (2024)
Noelia Antón-Bolaños, Irene Faravelli, Tyler Faits, Sophia Andreadis, Rahel Kastli, Sebastiano Trattaro, Xian Adiconis, Anqi Wei, Abhishek Sampath Kumar, Daniela Di Bella, Matthew Tegtmeyer, Ralda Nehme, Joshua Z Levin, Aviv Regev, Paola Arlotta
Brain Chimeroids reveal individual susceptibility to neurotoxic triggers. Nature 631 (8019) (2024)
Noelia Antón-Bolaños, Irene Faravelli, Tyler Faits, Sophia Andreadis, Rahel Kastli, Sebastiano Trattaro, Xian Adiconis, Anqi Wei, Abhishek Sampath Kumar, Daniela Di Bella, Matthew Tegtmeyer, Ralda Nehme, Joshua Z Levin, Aviv Regev, Paola Arlotta
Brain Chimeroids reveal individual susceptibility to neurotoxic triggers. Nature 631 (8019) (2024)
Noelia Antón-Bolaños, Irene Faravelli, Tyler Faits, Sophia Andreadis, Rahel Kastli, Sebastiano Trattaro, Xian Adiconis, Anqi Wei, Abhishek Sampath Kumar, Daniela Di Bella, Matthew Tegtmeyer, Ralda Nehme, Joshua Z Levin, Aviv Regev, Paola Arlotta
Brain Chimeroids reveal individual susceptibility to neurotoxic triggers. Nature 631 (8019) (2024)
Noelia Antón-Bolaños, Irene Faravelli, Tyler Faits, Sophia Andreadis, Rahel Kastli, Sebastiano Trattaro, Xian Adiconis, Anqi Wei, Abhishek Sampath Kumar, Daniela Di Bella, Matthew Tegtmeyer, Ralda Nehme, Joshua Z Levin, Aviv Regev, Paola Arlotta
Brain Chimeroids reveal individual susceptibility to neurotoxic triggers. Nature (2024)
Methodios Ximerakis, Kristina M Holton, Richard M Giadone, Ceren Ozek, Monika Saxena, Samara Santiago, Xian Adiconis, Danielle Dionne, Lan Nguyen, Kavya M Shah, Jill M Goldstein, Caterina Gasperini, Ioannis A Gampierakis, Scott L Lipnick, Sean K Simmons, Sean M Buchanan, Amy J Wagers, Aviv Regev, Joshua Z Levin, Lee L Rubin
Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types. Nature aging 3 (3) (2023)
Methodios Ximerakis, Kristina M Holton, Richard M Giadone, Ceren Ozek, Monika Saxena, Samara Santiago, Xian Adiconis, Danielle Dionne, Lan Nguyen, Kavya M Shah, Jill M Goldstein, Caterina Gasperini, Ioannis A Gampierakis, Scott L Lipnick, Sean K Simmons, Sean M Buchanan, Amy J Wagers, Aviv Regev, Joshua Z Levin, Lee L Rubin
Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types. Nature aging 3 (3) (2023)
Methodios Ximerakis, Kristina M Holton, Richard M Giadone, Ceren Ozek, Monika Saxena, Samara Santiago, Xian Adiconis, Danielle Dionne, Lan Nguyen, Kavya M Shah, Jill M Goldstein, Caterina Gasperini, Ioannis A Gampierakis, Scott L Lipnick, Sean K Simmons, Sean M Buchanan, Amy J Wagers, Aviv Regev, Joshua Z Levin, Lee L Rubin
Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types. Nature aging 3 (3) (2023)
Methodios Ximerakis, Kristina M Holton, Richard M Giadone, Ceren Ozek, Monika Saxena, Samara Santiago, Xian Adiconis, Danielle Dionne, Lan Nguyen, Kavya M Shah, Jill M Goldstein, Caterina Gasperini, Ioannis A Gampierakis, Scott L Lipnick, Sean K Simmons, Sean M Buchanan, Amy J Wagers, Aviv Regev, Joshua Z Levin, Lee L Rubin
Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types. Nature aging 3 (3) (2023)
Methodios Ximerakis, Kristina M Holton, Richard M Giadone, Ceren Ozek, Monika Saxena, Samara Santiago, Xian Adiconis, Danielle Dionne, Lan Nguyen, Kavya M Shah, Jill M Goldstein, Caterina Gasperini, Ioannis A Gampierakis, Scott L Lipnick, Sean K Simmons, Sean M Buchanan, Amy J Wagers, Aviv Regev, Joshua Z Levin, Lee L Rubin
Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types. Nature aging 3 (3) (2023)
Methodios Ximerakis, Kristina M Holton, Richard M Giadone, Ceren Ozek, Monika Saxena, Samara Santiago, Xian Adiconis, Danielle Dionne, Lan Nguyen, Kavya M Shah, Jill M Goldstein, Caterina Gasperini, Ioannis A Gampierakis, Scott L Lipnick, Sean K Simmons, Sean M Buchanan, Amy J Wagers, Aviv Regev, Joshua Z Levin, Lee L Rubin
Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types. Nature aging 3 (3) (2023)
Methodios Ximerakis, Kristina M Holton, Richard M Giadone, Ceren Ozek, Monika Saxena, Samara Santiago, Xian Adiconis, Danielle Dionne, Lan Nguyen, Kavya M Shah, Jill M Goldstein, Caterina Gasperini, Ioannis A Gampierakis, Scott L Lipnick, Sean K Simmons, Sean M Buchanan, Amy J Wagers, Aviv Regev, Joshua Z Levin, Lee L Rubin
Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types. Nature aging 3 (3) (2023)
Wen Yuan, Sai Ma, Juliana R Brown, Kwanho Kim, Vanessa Murek, Lucia Trastulla, Alexander Meissner, Simona Lodato, Ashwin S Shetty, Joshua Z Levin, Jason D Buenrostro, Michael J Ziller, Paola Arlotta
Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex. Nature neuroscience 25 (8) (2022)
Sean K Simmons, Gila Lithwick-Yanai, Xian Adiconis, Florian Oberstrass, Nika Iremadze, Kathryn R Geiger-Schuller, Pratiksha I Thakore, Chris J Frangieh, Omer Barad, Gilad Almogy, Orit Rozenblatt-Rosen, Aviv Regev, Doron Lipson, Joshua Z Levin
Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing. Nature biotechnology (2022)
Bruna Paulsen, Silvia Velasco, Amanda J Kedaigle, Martina Pigoni, Giorgia Quadrato, Anthony J Deo, Xian Adiconis, Ana Uzquiano, Rafaela Sartore, Sung Min Yang, Sean K Simmons, Panagiotis Symvoulidis, Kwanho Kim, Kalliopi Tsafou, Archana Podury, Catherine Abbate, Ashley Tucewicz, Samantha N Smith, Alexandre Albanese, Lindy E Barrett, Neville E Sanjana, Xi Shi, Kwanghun Chung, Kasper Lage, Edward S Boyden, Aviv Regev, Joshua Z Levin, Paola Arlotta
Autism genes converge on asynchronous development of shared neuron classes. Nature 602 (7896) (2022)
Jeffrey A Stogsdill, Kwanho Kim, Loïc Binan, Samouil L Farhi, Joshua Z Levin, Paola Arlotta
Pyramidal neuron subtype diversity governs microglia states in the neocortex. Nature 608 (7924) (2022)
Eeshit Dhaval Vaishnav, Carl G de Boer, Jennifer Molinet, Moran Yassour, Lin Fan, Xian Adiconis, Dawn A Thompson, Joshua Z Levin, Francisco A Cubillos, Aviv Regev
The evolution, evolvability and engineering of gene regulatory DNA. Nature 603 (7901) (2022)
Lauren Mifflin, Zhirui Hu, Connor Dufort, Cynthia C Hession, Alec J Walker, Kongyan Niu, Hong Zhu, Nan Liu, Zhirui Hu, Joshua Z Levin, Beth Stevens, Junying Yuan, Chengyu Zou
A RIPK1-regulated inflammatory microglial state in amyotrophic lateral sclerosis. Proceedings of the National Academy of Sciences of the United States of America 118 (13) (2021)
Xin Jin, Sean K Simmons, Amy Guo, Ashwin S Shetty, Michelle Ko, Lan Nguyen, Vahbiz Jokhi, Elise Robinson, Paul Oyler, Nathan Curry, Giulio Deangeli, Simona Lodato, Joshua Z Levin, Aviv Regev, Feng Zhang, Paola Arlotta
In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes. Science (New York, N.Y.) 370 (6520) (2021)
Elisabetta Mereu, Atefeh Lafzi, Catia Moutinho, Christoph Ziegenhain, Davis J McCarthy, Adrián Álvarez-Varela, Eduard Batlle, null Sagar, Dominic Grün, Julia K Lau, Stéphane C Boutet, Chad Sanada, Aik Ooi, Robert C Jones, Kelly Kaihara, Chris Brampton, Yasha Talaga, Yohei Sasagawa, Kaori Tanaka, Tetsutaro Hayashi, Caroline Braeuning, Cornelius Fischer, Sascha Sauer, Timo Trefzer, Christian Conrad, Xian Adiconis, Lan T Nguyen, Aviv Regev, Joshua Z Levin, Swati Parekh, Aleksandar Janjic, Lucas Esteban Wange, Johannes W Bagnoli, Wolfgang Enard, Marta Gut, Rickard Sandberg, Itoshi Nikaido, Ivo Glynne Gut, Oliver Stegle, Holger Heyn
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects. Nature biotechnology 38 (6) (2020)
Jiarui Ding, Xian Adiconis, Sean K Simmons, Monika S Kowalczyk, Cynthia C Hession, Nemanja D Marjanovic, Travis K Hughes, Marc H Wadsworth, Tyler Burks, Lan T Nguyen, John Y H Kwon, Boaz Barak, William Ge, Amanda J Kedaigle, Shaina Carroll, Shuqiang Li, Nir Hacohen, Orit Rozenblatt-Rosen, Alex K Shalek, Alexandra-Chloé Villani, Aviv Regev, Joshua Z Levin
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods. Nature biotechnology 38 (6) (2020)
Yinqing Li, Violeta G Lopez-Huerta, Xian Adiconis, Kirsten Levandowski, Soonwook Choi, Sean K Simmons, Mario A Arias-Garcia, Baolin Guo, Annie Y Yao, Timothy R Blosser, Ralf D Wimmer, Tomomi Aida, Alexander Atamian, Tina Naik, Xuyun Sun, Dasheng Bi, Diya Malhotra, Cynthia C Hession, Reut Shema, Marcos António Gomes, Taibo Li, Eunjin Hwang, Alexandra Krol, Monika Kowalczyk, João Peça, Gang Pan, Michael M Halassa, Joshua Z Levin, Zhanyan Fu, Guoping Feng
Distinct subnetworks of the thalamic reticular nucleus. Nature 583 (7818) (2020)
Methodios Ximerakis, Scott L Lipnick, Brendan T Innes, Sean K Simmons, Xian Adiconis, Danielle Dionne, Brittany A Mayweather, Lan Nguyen, Zachary Niziolek, Ceren Ozek, Vincent L Butty, Ruth Isserlin, Sean M Buchanan, Stuart S Levine, Aviv Regev, Gary D Baider, Joshua Z Levin, Lee L Rubin
Single-cell transcriptomic profiling of the aging mouse brain. Nature neuroscience 22 (10) (2019)
Xian Adiconis, Adam L Haber, Sean K Simmons, Ami Levy Moonshine, Zhe Ji, Michele A Busby, Xi Shi, Justin Jacques, Madeline A Lancaster, Jen Q Pan, Aviv Regev, Joshua Z Levin
Comprehensive comparative analysis of 5'-end RNA-sequencing methods. Nature methods 15 (7) (2018)
Halil Tekin, Sean Simmons, Beryl Cummings, Linyi Alex Gao, Xian Adiconis, Cynthia C Hession, Ayan Ghoshal, Danielle Dionne, Sourav R Choudhury, Volkan Yesilyurt, Neville E Sanjana, Xi Shi, Congyi Lu, Matthias Heidenreich, Jen Q Pan, Joshua Z Levin, Feng Zhang
Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons. Nature biomedical engineering 2 (7) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Joshua Z Levin