Christopher W Benner (Christopher Benner, Chris Benner)

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 27

Top Venues

Nature

Nature communications

bioRxiv : the preprint server for biology

BMC bioinformatics

University of California San Diego

University of California San Diego (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Diego Mar 01 2016

United States

Assistant Professor :: Medicine

Salk Institute for Biological Studies Apr 01 2012 - Nov 01 2015

United States

Director :: Integrative Genomics Core

Education History

University of California San Diego Sep 21 2002 - Jan 15 2009

United States

PHD :: Bioinformatics

University of California San Diego Sep 20 1998 - Jun 15 2002

United States

BSC :: Bioengineering

Publications

Hao Chen, Frederick J King, Bin Zhou, Yu Wang, Carter J Canedy, Joel Hayashi, Yang Zhong, Max W Chang, Lars Pache, Julian L Wong, Yong Jia, John Joslin, Tao Jiang, Christopher W Benner, Sumit K Chanda, Yingyao Zhou
Drug target prediction through deep learning functional representation of gene signatures. Nature communications 15 (1) (2024)
Hao Chen, Frederick J King, Bin Zhou, Yu Wang, Carter J Canedy, Joel Hayashi, Yang Zhong, Max W Chang, Lars Pache, Julian L Wong, Yong Jia, John Joslin, Tao Jiang, Christopher W Benner, Sumit K Chanda, Yingyao Zhou
Drug target prediction through deep learning functional representation of gene signatures. Nature communications 15 (1) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Hao Chen, Frederick J King, Bin Zhou, Yu Wang, Carter J Canedy, Joel Hayashi, Yang Zhong, Max W Chang, Lars Pache, Julian L Wong, Yong Jia, John Joslin, Tao Jiang, Christopher W Benner, Sumit K Chanda, Yingyao Zhou
Drug target prediction through deep learning functional representation of gene signatures. Nature communications 15 (1) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature (2024)
Hao Chen, Frederick J King, Bin Zhou, Yu Wang, Carter J Canedy, Joel Hayashi, Yang Zhong, Max W Chang, Lars Pache, Julian L Wong, Yong Jia, John Joslin, Tao Jiang, Christopher W Benner, Sumit K Chanda, Yingyao Zhou
Drug target prediction through deep learning functional representation of gene signatures. Nature communications 15 (1) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Tristan V de Jong, Yanchao Pan, Pasi Rastas, Daniel Munro, Monika Tutaj, Huda Akil, Christopher W Benner, Apurva S Chitre, William Chow, Vincenza Colonna, Cliffton L Dalgard, Wendy M Demos, Peter A Doris, Erik P Garrison, Aron M Geurts, Mustafa H Gunturkun, Victor Guryev, Thibaut Hourlier, Kerstin Howe, Jun Huang, Theodore S Kalbfleisch, Panjun Kim, Ling Li, Spencer Mahaffey, Fergal J Martin, Pejman Mohammadi, Ayse Bilge Ozel, Oksana Polesskaya, Michal Pravenec, Pjotr Prins, Jonathan Sebat, Jennifer R Smith, Leah C Solberg Woods, Boris Tabakoff, Alan Tracey, Marcela Uliano-Silva, Flavia Villani, Hongyang Wang, Burt M Sharp, Francesca Telese, Zhihua Jiang, Laura M Saba, Xusheng Wang, Terence D Murphy, Abraham A Palmer, Anne E Kwitek, Melinda Mindy R Dwinell, Robert W Williams, Jun Z Li, Hao Chen
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats. bioRxiv : the preprint server for biology (2023)
Carlos Guzman, Sascha H C Duttke, Yixin Zhu, Camila De Arruda Saldanha, Nicholas L Downes, Christopher W Benner, Sven Heinz
Combining TSS-MPRA and sensitive TSS profile dissimilarity scoring to study the sequence determinants of transcription initiation. Nucleic acids research (2023)
Juan García-Bernalt Diego, Gagandeep Singh, Sonia Jangra, Hui-Ning Wu, Manon Laporte, Lauren A Chang, Sara S El Zahed, Lars Pache, Max W Chang, Prajakta Warang, Sadaf Aslam, Ignacio Mena, Brett T Webb, Christopher W Benner, Adolfo García-Sastre, Michael Schotsaert
Breakthrough infections by SARS-CoV-2 variants boost cross-reactive hybrid immune responses in mRNA-vaccinated Golden Syrian Hamsters. bioRxiv : the preprint server for biology (2023)
Nathaniel P Delos Santos, Sascha H C Duttke, Sven Heinz, Christopher W Benner
MEPP: more transparent motif enrichment by profiling positional correlations. NAR genomics and bioinformatics 4 (4) (2022)
Sascha H C Duttke, Sinem Beyhan, Rajendra Singh, Sonya Neal, Suganya Viriyakosol, Joshua Fierer, Theo N Kirkland, Jason E Stajich, Christopher W Benner, Aaron F Carlin
Decoding Transcription Regulatory Mechanisms Associated with Coccidioides immitis Phase Transition Using Total RNA. mSystems 7 (1) (2022)
Baolei Yuan, Xuan Zhou, Keiichiro Suzuki, Gerardo Ramos-Mandujano, Mengge Wang, Muhammad Tehseen, Lorena V Cortés-Medina, James J Moresco, Sarah Dunn, Reyna Hernandez-Benitez, Tomoaki Hishida, Na Young Kim, Manal M Andijani, Chongwei Bi, Manching Ku, Yuta Takahashi, Jinna Xu, Jinsong Qiu, Ling Huang, Christopher W Benner, Emi Aizawa, Jing Qu, Guang-Hui Liu, Zhongwei Li, Fei Yi, Yanal Ghosheh, Changwei Shao, Maxim Shokhirev, Patrizia Comoli, Francesco Frassoni, John Yates Iii, Xiang-Dong Fu, Concepcion Rodriguez Esteban, Samir M Hamdan, Juan Carlos Izpisua Belmonte, Mo Li
Author Correction: Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing. Nature communications 13 (1) (2022)
Baolei Yuan, Xuan Zhou, Keiichiro Suzuki, Gerardo Ramos-Mandujano, Mengge Wang, Muhammad Tehseen, Lorena V Cortés-Medina, James J Moresco, Sarah Dunn, Reyna Hernandez-Benitez, Tomoaki Hishida, Na Young Kim, Manal M Andijani, Chongwei Bi, Manching Ku, Yuta Takahashi, Jinna Xu, Jinsong Qiu, Ling Huang, Christopher W Benner, Emi Aizawa, Jing Qu, Guang-Hui Liu, Zhongwei Li, Fei Yi, Yanal Ghosheh, Changwei Shao, Maxim Shokhirev, Patrizia Comoli, Francesco Frassoni, John Yates Iii, Xiang-Dong Fu, Concepcion Rodriguez Esteban, Samir M Hamdan, Juan Carlos Izpisua Belmonte, Mo Li
Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing. Nature communications 13 (1) (2022)
Michael Tun Yin Lam, Sascha H C Duttke, Mazen F Odish, Hiep D Le, Emily A Hansen, Celina T Nguyen, Samantha Trescott, Roy Kim, Shaunak Deota, Max W Chang, Arjun Patel, Mark Hepokoski, Mona Alotaibi, Mark Rolfsen, Katherine Perofsky, Anna S Warden, Jennifer Foley, Sydney I Ramirez, Jennifer M Dan, Robert K Abbott, Shane Crotty, Laura E Crotty Alexander, Atul Malhotra, Satchidananda Panda, Christopher W Benner, Nicole G Coufal
Profiling Transcription Initiation in Peripheral Leukocytes Reveals Severity-Associated Cis-Regulatory Elements in Critical COVID-19. bioRxiv : the preprint server for biology (2021)
Laura Martin-Sancho, Shashank Tripathi, Ariel Rodriguez-Frandsen, Lars Pache, María Teresa Sánchez-Aparicio, Michael J McGregor, Kelsey M Haas, Danielle L Swaney, Thong T Nguyen, João I Mamede, Christopher Churas, Dexter Pratt, Sara B Rosenthal, Laura Riva, Courtney Nguyen, Nish Beltran-Raygoza, Stephen Soonthornvacharin, Guojun Wang, David Jimenez-Morales, Paul D De Jesus, Hong M Moulton, David A Stein, Max W Chang, Christopher W Benner, Trey Ideker, Randy A Albrecht, Judd F Hultquist, Nevan J Krogan, Adolfo García-Sastre, Sumit K Chanda
Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy. Nature microbiology 6 (10) (2021)
Jung-Yeon Lim, Sascha H C Duttke, Turner S Baker, Jihye Lee, Kristyne J Gambino, Nicholas J Venturini, Jessica Sook Yuin Ho, Simin Zheng, Yesai S Fstkchyan, Vinodh Pillai, David C Fajgenbaum, Ivan Marazzi, Christopher W Benner, Minji Byun
DNMT3A haploinsufficiency causes dichotomous DNA methylation defects at enhancers in mature human immune cells. The Journal of experimental medicine 218 (7) (2021)
Nathaniel P Delos Santos, Lorane Texari, Christopher W Benner
MEIRLOP: improving score-based motif enrichment by incorporating sequence bias covariates. BMC bioinformatics 21 (1) (2020)
Samuel J Roth, Sven Heinz, Christopher W Benner
ARTDeco: automatic readthrough transcription detection. BMC bioinformatics 21 (1) (2020)
Nicholas K Vinckier, Nisha A Patel, Ryan J Geusz, Allen Wang, Jinzhao Wang, Ileana Matta, Austin R Harrington, Matthew Wortham, Nichole Wetton, Jianxun Wang, Ulupi S Jhala, Michael G Rosenfeld, Christopher W Benner, Hung-Ping Shih, Bjoern Gaertner
LSD1-mediated enhancer silencing attenuates retinoic acid signalling during pancreatic endocrine cell development. Nature communications 11 (1) (2020)
Vy Tran, Mitchell P Ledwith, Thiprampai Thamamongood, Christina A Higgins, Shashank Tripathi, Max W Chang, Christopher W Benner, Adolfo García-Sastre, Martin Schwemmle, Adrianus C M Boon, Michael S. Diamond, Andrew Mehle
Influenza virus repurposes the antiviral protein IFIT2 to promote translation of viral mRNAs. Nature microbiology 5 (12) (2020)
Sascha H C Duttke, Max W Chang, Sven Heinz, Christopher W Benner
Identification and dynamic quantification of regulatory elements using total RNA. Genome research 29 (11) (2019)

Christopher W Benner.css-eqlu8i{font-size:small;padding-left:4px;} (Christopher Benner, Chris Benner)

Publication Activity (10 Years)

Top Topics

Top Venues

Christopher W Benner (Christopher Benner, Chris Benner)