Lars Pache

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 30

Top Venues

Scientific data

Nature communications

Viruses

Nature

This page only lists publications with an associated author ORCID identifier.

Publications

Hao Chen, Frederick J King, Bin Zhou, Yu Wang, Carter J Canedy, Joel Hayashi, Yang Zhong, Max W Chang, Lars Pache, Julian L Wong, Yong Jia, John Joslin, Tao Jiang, Christopher W Benner, Sumit K Chanda, Yingyao Zhou
Drug target prediction through deep learning functional representation of gene signatures. Nature communications 15 (1) (2024)
Hao Chen, Frederick J King, Bin Zhou, Yu Wang, Carter J Canedy, Joel Hayashi, Yang Zhong, Max W Chang, Lars Pache, Julian L Wong, Yong Jia, John Joslin, Tao Jiang, Christopher W Benner, Sumit K Chanda, Yingyao Zhou
Drug target prediction through deep learning functional representation of gene signatures. Nature communications 15 (1) (2024)
Laura Riva, Shuofeng Yuan, Xin Yin, Laura Martin-Sancho, Naoko Matsunaga, Lars Pache, Sebastian Burgstaller-Muehlbacher, Paul D De Jesus, Peter Teriete, Mitchell V Hull, Max W Chang, Jasper Fuk-Woo Chan, Jianli Cao, Vincent Kwok-Man Poon, Kristina M Herbert, Kuoyuan Cheng, Tu-Trinh H Nguyen, Andrey Rubanov, Yuan Pu, Courtney Nguyen, Angela Choi, Raveen Rathnasinghe, Michael Schotsaert, Lisa Miorin, Marion Dejosez, Thomas P Zwaka, Ko-Yung Sit, Luis Martinez-Sobrido, Wen-Chun Liu, Kris M White, Mackenzie E Chapman, Emma K Lendy, Richard J Glynne, Randy A Albrecht, Eytan Ruppin, Andrew D Mesecar, Jeffrey R Johnson, Christopher Benner, Ren Sun, Peter G Schultz, Andrew I Su, Adolfo García-Sastre, Arnab K Chatterjee, Kwok-Yung Yuen, Sumit K Chanda
Author Correction: Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing. Nature (2024)
Hao Chen, Frederick J King, Bin Zhou, Yu Wang, Carter J Canedy, Joel Hayashi, Yang Zhong, Max W Chang, Lars Pache, Julian L Wong, Yong Jia, John Joslin, Tao Jiang, Christopher W Benner, Sumit K Chanda, Yingyao Zhou
Drug target prediction through deep learning functional representation of gene signatures. Nature communications 15 (1) (2024)
Hao Chen, Frederick J King, Bin Zhou, Yu Wang, Carter J Canedy, Joel Hayashi, Yang Zhong, Max W Chang, Lars Pache, Julian L Wong, Yong Jia, John Joslin, Tao Jiang, Christopher W Benner, Sumit K Chanda, Yingyao Zhou
Drug target prediction through deep learning functional representation of gene signatures. Nature communications 15 (1) (2024)
Ginger Tsueng, Marco A Alvarado Cano, José Bento, Candice Czech, Mengjia Kang, Lars Pache, Luke V Rasmussen, Tor C Savidge, Justin Starren, Qinglong Wu, Jiwen Xin, Michael R Yeaman, Xinghua Zhou, Andrew I Su, Chunlei Wu, Liliana Brown, Reed S Shabman, Laura D Hughes, null null
Developing a standardized but extendable framework to increase the findability of infectious disease datasets. Scientific data 10 (1) (2023)
Laura D Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D Horvath, Luke V Rasmussen, Tor C Savidge, Thomas Stoeger, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I Su, Lars Pache, null null
Addressing barriers in FAIR data practices for biomedical data. Scientific data 10 (1) (2023)
Natasha N Duggan, Tatjana Dragic, Sumit K Chanda, Lars Pache
Breaking the Silence: Regulation of HIV Transcription and Latency on the Road to a Cure. Viruses 15 (12) (2023)
Laura D Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D Horvath, Luke V Rasmussen, Tor C Savidge, Thomas Stoeger, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I Su, Lars Pache, null null
Addressing barriers in FAIR data practices for biomedical data. Scientific data 10 (1) (2023)
Laura D Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D Horvath, Luke V Rasmussen, Tor C Savidge, Thomas Stoeger, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I Su, Lars Pache, null null
Addressing barriers in FAIR data practices for biomedical data. Scientific data 10 (1) (2023)
Ginger Tsueng, Marco A Alvarado Cano, José Bento, Candice Czech, Mengjia Kang, Lars Pache, Luke V Rasmussen, Tor C Savidge, Justin Starren, Qinglong Wu, Jiwen Xin, Michael R Yeaman, Xinghua Zhou, Andrew I Su, Chunlei Wu, Liliana Brown, Reed S Shabman, Laura D Hughes, null null
Developing a standardized but extendable framework to increase the findability of infectious disease datasets. Scientific data 10 (1) (2023)
Ginger Tsueng, Marco A Alvarado Cano, José Bento, Candice Czech, Mengjia Kang, Lars Pache, Luke V Rasmussen, Tor C Savidge, Justin Starren, Qinglong Wu, Jiwen Xin, Michael R Yeaman, Xinghua Zhou, Andrew I Su, Chunlei Wu, Liliana Brown, Reed S Shabman, Laura D Hughes, null null
Developing a standardized but extendable framework to increase the findability of infectious disease datasets. Scientific data 10 (1) (2023)
Gagandeep Singh, Prajakta Warang, Juan García-Bernalt Diego, Lauren A Chang, Yonina Bykov, Sarabjot Singh, Lars Pache, Sara Cuadrado-Castano, Brett Webb, Adolfo García-Sastre, Michael Schotsaert
Host immune responses associated with SARS-CoV-2 Omicron infection result in protection or pathology during reinfection depending on mouse genetic background. Research square (2023)
Natasha N Duggan, Tatjana Dragic, Sumit K Chanda, Lars Pache
Breaking the Silence: Regulation of HIV Transcription and Latency on the Road to a Cure. Viruses 15 (12) (2023)
Natasha N Duggan, Tatjana Dragic, Sumit K Chanda, Lars Pache
Breaking the Silence: Regulation of HIV Transcription and Latency on the Road to a Cure. Viruses 15 (12) (2023)
Laura D Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D Horvath, Luke V Rasmussen, Tor C Savidge, Thomas Stoeger, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I Su, Lars Pache, null null
Addressing barriers in FAIR data practices for biomedical data. Scientific data 10 (1) (2023)
Ginger Tsueng, Marco A Alvarado Cano, José Bento, Candice Czech, Mengjia Kang, Lars Pache, Luke V Rasmussen, Tor C Savidge, Justin Starren, Qinglong Wu, Jiwen Xin, Michael R Yeaman, Xinghua Zhou, Andrew I Su, Chunlei Wu, Liliana Brown, Reed S Shabman, Laura D Hughes, null null
Developing a standardized but extendable framework to increase the findability of infectious disease datasets. Scientific data 10 (1) (2023)
Kelsey M Haas, Michael J McGregor, Mehdi Bouhaddou, Benjamin J Polacco, Eun-Young Kim, Thong T Nguyen, Billy W Newton, Matthew Urbanowski, Heejin Kim, Michael A P Williams, Veronica V Rezelj, Alexandra Hardy, Andrea Fossati, Erica J Stevenson, Ellie Sukerman, Tiffany Kim, Sudhir Penugonda, Elena Moreno, Hannes Braberg, Yuan Zhou, Giorgi Metreveli, Bhavya Harjai, Tia A Tummino, James E Melnyk, Margaret Soucheray, Jyoti Batra, Lars Pache, Laura Martin-Sancho, Jared Carlson-Stevermer, Alexander S Jureka, Christopher F Basler, Kevan M Shokat, Brian K Shoichet, Leah P Shriver, Jeffrey R Johnson, Megan L Shaw, Sumit K Chanda, Dan M Roden, Tonia C Carter, Leah C Kottyan, Rex L Chisholm, Jennifer Allen Pacheco, Maureen E Smith, Steven J Schrodi, Randy A Albrecht, Marco Vignuzzi, Lorena Zuliani-Alvarez, Danielle L Swaney, Manon Eckhardt, Steven M Wolinsky, Kris M White, Judd F Hultquist, Robyn M Kaake, Adolfo García-Sastre, Nevan J Krogan
Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets. Nature communications 14 (1) (2023)
Laura D Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D Horvath, Luke V Rasmussen, Tor C Savidge, Thomas Stoeger, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I Su, Lars Pache, null null
Addressing barriers in FAIR data practices for biomedical data. Scientific data 10 (1) (2023)
Laura D Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D Horvath, Luke V Rasmussen, Tor C Savidge, Thomas Stoeger, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I Su, Lars Pache, null null
Addressing barriers in FAIR data practices for biomedical data. Scientific data 10 (1) (2023)
Ginger Tsueng, Marco A Alvarado Cano, José Bento, Candice Czech, Mengjia Kang, Lars Pache, Luke V Rasmussen, Tor C Savidge, Justin Starren, Qinglong Wu, Jiwen Xin, Michael R Yeaman, Xinghua Zhou, Andrew I Su, Chunlei Wu, Liliana Brown, Reed S Shabman, Laura D Hughes, null null
Developing a standardized but extendable framework to increase the findability of infectious disease datasets. Scientific data 10 (1) (2023)
Ginger Tsueng, Marco A Alvarado Cano, José Bento, Candice Czech, Mengjia Kang, Lars Pache, Luke V Rasmussen, Tor C Savidge, Justin Starren, Qinglong Wu, Jiwen Xin, Michael R Yeaman, Xinghua Zhou, Andrew I Su, Chunlei Wu, Liliana Brown, Reed S Shabman, Laura D Hughes, null null
Developing a standardized but extendable framework to increase the findability of infectious disease datasets. Scientific data 10 (1) (2023)
Natasha N Duggan, Tatjana Dragic, Sumit K Chanda, Lars Pache
Breaking the Silence: Regulation of HIV Transcription and Latency on the Road to a Cure. Viruses 15 (12) (2023)
Christian V Forst, Laura Martin-Sancho, Shashank Tripathi, Guojun Wang, Luiz Gustavo Dos Anjos Borges, Minghui Wang, Adam Geber, Lauren Lashua, Tao Ding, Xianxiao Zhou, Chalise E Carter, Giorgi Metreveli, Ariel Rodriguez-Frandsen, Matthew D Urbanowski, Kris M White, David A Stein, Hong Moulton, Sumit K Chanda, Lars Pache, Megan L Shaw, Ted M Ross, Elodie Ghedin, Adolfo García-Sastre, Bin Zhang
Common and species-specific molecular signatures, networks, and regulators of influenza virus infection in mice, ferrets, and humans. Science advances 8 (40) (2022)
Charlotte A Stoneham, Simon Langer, Paul D De Jesus, Jacob M Wozniak, John Lapek, Thomas Deerinck, Andrea Thor, Lars Pache, Sumit K Chanda, David J Gonzalez, Mark Ellisman, John Guatelli
A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor. PLoS pathogens 17 (11) (2021)
Shuofeng Yuan, Xin Yin, Xiangzhi Meng, Jasper Fuk-Woo Chan, Zi-Wei Ye, Laura Riva, Lars Pache, Chris Chun-Yiu Chan, Pok-Man Lai, Chris Chung-Sing Chan, Vincent Kwok-Man Poon, Andrew Chak-Yiu Lee, Naoko Matsunaga, Yuan Pu, Chun-Kit Yuen, Jianli Cao, Ronghui Liang, Kaiming Tang, Li Sheng, Yushen Du, Wan Xu, Chit-Ying Lau, Ko-Yung Sit, Wing Kuk Timmy Au, Runming Wang, Yu-Yuan Zhang, Yan-Dong Tang, Thomas Mandel Clausen, Jessica Pihl, Juntaek Oh, Kong-Hung Sze, Anna Jian-Xia Zhang, Hin Chu, Raven K H Kok, Dong Wang, Xue-Hui Cai, Jeffrey D Esko, Ivan Fan-Ngai Hung, Ronald Adolphus Li, Hong-Lin Chen, Hongzhe Sun, Dong-Yan Jin, Ren Sun, Sumit K Chanda, Kwok-Yung Yuen
Clofazimine broadly inhibits coronaviruses including SARS-CoV-2. Nature 593 (7859) (2021)
Laura Martin-Sancho, Shashank Tripathi, Ariel Rodriguez-Frandsen, Lars Pache, María Teresa Sánchez-Aparicio, Michael J McGregor, Kelsey M Haas, Danielle L Swaney, Thong T Nguyen, João I Mamede, Christopher Churas, Dexter Pratt, Sara B Rosenthal, Laura Riva, Courtney Nguyen, Nish Beltran-Raygoza, Stephen Soonthornvacharin, Guojun Wang, David Jimenez-Morales, Paul D De Jesus, Hong M Moulton, David A Stein, Max W Chang, Christopher W Benner, Trey Ideker, Randy A Albrecht, Judd F Hultquist, Nevan J Krogan, Adolfo García-Sastre, Sumit K Chanda
Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy. Nature microbiology 6 (10) (2021)
Simon Langer, Xin Yin, Arturo Diaz, Alex J Portillo, David E Gordon, Umu H Rogers, John M Marlett, Nevan J Krogan, John A T Young, Lars Pache, Sumit K Chanda
The E3 Ubiquitin-Protein Ligase Cullin 3 Regulates HIV-1 Transcription. Cells 9 (9) (2020)
Laura Riva, Shuofeng Yuan, Xin Yin, Laura Martin-Sancho, Naoko Matsunaga, Lars Pache, Sebastian Burgstaller-Muehlbacher, Paul D De Jesus, Peter Teriete, Mitchell V Hull, Max W Chang, Jasper Fuk-Woo Chan, Jianli Cao, Vincent Kwok-Man Poon, Kristina M Herbert, Kuoyuan Cheng, Tu-Trinh H Nguyen, Andrey Rubanov, Yuan Pu, Courtney Nguyen, Angela Choi, Raveen Rathnasinghe, Michael Schotsaert, Lisa Miorin, Marion Dejosez, Thomas P Zwaka, Ko-Yung Sit, Luis Martinez-Sobrido, Wen-Chun Liu, Kris M White, Mackenzie E Chapman, Emma K Lendy, Richard J Glynne, Randy A Albrecht, Eytan Ruppin, Andrew D Mesecar, Jeffrey R Johnson, Christopher Benner, Ren Sun, Peter G Schultz, Andrew I Su, Adolfo García-Sastre, Arnab K Chatterjee, Kwok-Yung Yuen, Sumit K Chanda
Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing. Nature 586 (7827) (2020)
Shuofeng Yuan, Xin Yin, XiangZhi Meng, Jasper Chan, Zi-Wei Ye, Laura Riva, Lars Pache, Chris Chun-Yiu Chan, Pok-Man Lai, Chris Chan, Vincent Poon, Naoko Matsunaga, Yuan Pu, Chun-Kit Yuen, Jianli Cao, Ronghui Liang, Kaiming Tang, Li Sheng, Yushen Du, Wan Xu, Kong-Hung Sze, Jinxia Zhang, Hin Chu, Raven K H Kok, Kelvin Kai Wang To, Dong-Yan Jin, Ren Sun, Sumit K Chanda, Kwok-Yung Yuen
Clofazimine is a broad-spectrum coronavirus inhibitor that antagonizes SARS-CoV-2 replication in primary human cell culture and hamsters. Research square (2020)

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Publication Activity (10 Years)

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Lars Pache