Pasi Rastas

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 29

Top Topics

Hepatitis C Virus

Top Venues

Nature genetics

Science advances

G3 (Bethesda, Md.)

This page only lists publications with an associated author ORCID identifier.

Publications

Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Dandan Wang, Pasi Rastas, Xueling Yi, Ari Löytynoja, Mikko Kivikoski, Xueyun Feng, Kerry Reid, Juha Merilä
Improved assembly of the Pungitius pungitius reference genome. G3 (Bethesda, Md.) 14 (8) (2024)
Dandan Wang, Pasi Rastas, Xueling Yi, Ari Löytynoja, Mikko Kivikoski, Xueyun Feng, Kerry Reid, Juha Merilä
Improved assembly of the Pungitius pungitius reference genome. G3 (Bethesda, Md.) 14 (8) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Xueling Yi, Petri Kemppainen, Kerry Reid, Ying Chen, Pasi Rastas, Antoine Fraimout, Juha Merilä
Heterogeneous genomic architecture of skeletal armour traits in sticklebacks. Journal of evolutionary biology 37 (9) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Dandan Wang, Pasi Rastas, Xueling Yi, Ari Löytynoja, Mikko Kivikoski, Xueyun Feng, Kerry Reid, Juha Merilä
Improved assembly of the Pungitius pungitius reference genome. G3 (Bethesda, Md.) 14 (8) (2024)
Kalle Tunström, Alyssa Woronik, Joseph J Hanly, Pasi Rastas, Anton Chichvarkhin, Andrew D Warren, Akito Y Kawahara, Sean D Schoville, Vincent Ficarrotta, Adam H Porter, Ward B Watt, Arnaud Martin, Christopher West Wheat
Evidence for a single, ancient origin of a genus-wide alternative life history strategy. Science advances 9 (12) (2023)
Tristan V de Jong, Yanchao Pan, Pasi Rastas, Daniel Munro, Monika Tutaj, Huda Akil, Christopher W Benner, Apurva S Chitre, William Chow, Vincenza Colonna, Cliffton L Dalgard, Wendy M Demos, Peter A Doris, Erik P Garrison, Aron M Geurts, Mustafa H Gunturkun, Victor Guryev, Thibaut Hourlier, Kerstin Howe, Jun Huang, Theodore S Kalbfleisch, Panjun Kim, Ling Li, Spencer Mahaffey, Fergal J Martin, Pejman Mohammadi, Ayse Bilge Ozel, Oksana Polesskaya, Michal Pravenec, Pjotr Prins, Jonathan Sebat, Jennifer R Smith, Leah C Solberg Woods, Boris Tabakoff, Alan Tracey, Marcela Uliano-Silva, Flavia Villani, Hongyang Wang, Burt M Sharp, Francesca Telese, Zhihua Jiang, Laura M Saba, Xusheng Wang, Terence D Murphy, Abraham A Palmer, Anne E Kwitek, Melinda Mindy R Dwinell, Robert W Williams, Jun Z Li, Hao Chen
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats. bioRxiv : the preprint server for biology (2023)
Kalle Tunström, Alyssa Woronik, Joseph J Hanly, Pasi Rastas, Anton Chichvarkhin, Andrew D Warren, Akito Y Kawahara, Sean D Schoville, Vincent Ficarrotta, Adam H Porter, Ward B Watt, Arnaud Martin, Christopher West Wheat
Evidence for a single, ancient origin of a genus-wide alternative life history strategy. Science advances 9 (12) (2023)
Francesco Cicconardi, Edoardo Milanetti, Erika C P de Castro, Anyi Mazo-Vargas, Steven M Van Belleghem, Angelo Alberto Ruggieri, Pasi Rastas, Joseph J Hanly, Elizabeth Evans, Chris D Jiggins, W Owen McMillan, Riccardo Papa, Daniele Di Marino, Arnaud Martin, Stephen Hugh Montgomery
Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies. Nature communications 14 (1) (2023)
Kalle Tunström, Alyssa Woronik, Joseph J Hanly, Pasi Rastas, Anton Chichvarkhin, Andrew D Warren, Akito Y Kawahara, Sean D Schoville, Vincent Ficarrotta, Adam H Porter, Ward B Watt, Arnaud Martin, Christopher West Wheat
Evidence for a single, ancient origin of a genus-wide alternative life history strategy. Science advances 9 (12) (2023)
Mikko Kivikoski, Pasi Rastas, Ari Löytynoja, Juha Merilä
Predicting recombination frequency from map distance. Heredity 130 (3) (2022)
Maria de la Paz Celorio-Mancera, Pasi Rastas, Rachel A Steward, Sören Nylin, Christopher West Wheat
Chromosome Level Assembly of the Comma Butterfly (Polygonia c-album). Genome biology and evolution 13 (5) (2022)
Mikko Kivikoski, Pasi Rastas, Ari Löytynoja, Juha Merilä
Predicting recombination frequency from map distance. Heredity (2022)
Mikko Kivikoski, Pasi Rastas, Ari Löytynoja, Juha Merilä
Predicting recombination frequency from map distance. Heredity 130 (3) (2022)
Olli-Pekka Smolander, Daniel Blande, Virpi Ahola, Pasi Rastas, Jaakko Tanskanen, Juhana I Kammonen, Vicencio Oostra, Lorenzo Pellegrini, Suvi Ikonen, Tad A Dallas, Michelle F DiLeo, Anne Duplouy, Ilhan Cem Duru, Pauliina Halimaa, Aapo Kahilainen, Suyog S Kuwar, Sirpa O Kärenlampi, Elvira Lafuente, Shiqi Luo, Jenny Makkonen, Abhilash Nair, Maria de la Paz Celorio-Mancera, Ville Pennanen, Annukka Ruokolainen, Tarja Sundell, Arja I Tervahauta, Victoria G Twort, van Bergen Erik, Janina Österman-Udd, Lars Paulin, Mikko J Frilander, Petri Auvinen, Saastamoinen Marjo
Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map. GigaScience 11 (1) (2022)
Mikko Kivikoski, Pasi Rastas, Ari Löytynoja, Juha Merilä
Predicting recombination frequency from map distance. Heredity 130 (3) (2022)
Joanna L Rifkin, Solomiya Hnatovska, Meng Yuan, Bianca M Sacchi, Baharul I Choudhury, Yunchen Gong, Pasi Rastas, Spencer C H Barrett, Stephen I Wright
Recombination landscape dimorphism and sex chromosome evolution in the dioecious plant Rumex hastatulus . Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1850) (2022)
Mikko Kivikoski, Pasi Rastas, Ari Löytynoja, Juha Merilä
Predicting recombination frequency from map distance. Heredity 130 (3) (2022)
Mikko Kivikoski, Pasi Rastas, Ari Löytynoja, Juha Merilä
Predicting recombination frequency from map distance. Heredity (2022)
Mikko Kivikoski, Pasi Rastas, Ari Löytynoja, Juha Merilä
Predicting recombination frequency from map distance. Heredity 130 (3) (2022)
Mikko Kivikoski, Pasi Rastas, Ari Löytynoja, Juha Merilä
Automated improvement of stickleback reference genome assemblies with Lep-Anchor software. Molecular ecology resources 21 (6) (2021)