Aaron F Carlin (Aaron Carlin)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 48

Top Topics

Angiotensin Converting Enzyme

Transcription Factor

Top Venues

Nature communications

Analytical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Partha Ray, Melissa Ledgerwood-Lee, Howard Brickner, Alex E Clark, Aaron F Garretson, Rishi Graham, Westley Van Zant, Aaron F Carlin, Eliah S Aronoff-Spencer
Design and Development of an Antigen Test for SARS-CoV-2 Nucleocapsid Protein to Validate the Viral Quality Assurance Panels. Viruses 16 (5) (2024)
Partha Ray, Melissa Ledgerwood-Lee, Howard Brickner, Alex E Clark, Aaron F Garretson, Rishi Graham, Westley Van Zant, Aaron F Carlin, Eliah S Aronoff-Spencer
Design and Development of an Antigen Test for SARS-CoV-2 Nucleocapsid Protein to Validate the Viral Quality Assurance Panels. Viruses 16 (5) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Aaron F Carlin, James R Beadle, Jeremy Ardanuy, Alex E Clark, Victoria Rhodes, Aaron F Garretson, Joyce A Murphy, Nadejda Valiaeva, Robert T Schooley, Matthew B Friemann, Karl Y Hostetler
Oral pharmacokinetics and efficacy of oral phospholipid remdesivir nucleoside prodrugs against SARS-CoV-2 in mice. Antimicrobial agents and chemotherapy (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Partha Ray, Melissa Ledgerwood-Lee, Howard Brickner, Alex E Clark, Aaron F Garretson, Rishi Graham, Westley Van Zant, Aaron F Carlin, Eliah S Aronoff-Spencer
Design and Development of an Antigen Test for SARS-CoV-2 Nucleocapsid Protein to Validate the Viral Quality Assurance Panels. Viruses 16 (5) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature (2024)
Partha Ray, Melissa Ledgerwood-Lee, Howard Brickner, Alex E Clark, Aaron F Garretson, Rishi Graham, Westley Van Zant, Aaron F Carlin, Eliah S Aronoff-Spencer
Design and Development of an Antigen Test for SARS-CoV-2 Nucleocapsid Protein to Validate the Viral Quality Assurance Panels. Viruses 16 (5) (2024)
Sascha H C Duttke, Carlos Guzman, Max W Chang, Nathaniel P Delos Santos, Bayley R McDonald, Jialei Xie, Aaron F Carlin, Sven Heinz, Christopher W Benner
Position-dependent function of human sequence-specific transcription factors. Nature 631 (8022) (2024)
Aaron F Carlin, Alex E Clark, Aaron F Garretson, William Bray, Magali Porrachia, AsherLev T Santos, Tariq M Rana, Antoine Chaillon, Davey M Smith
Neutralizing Antibody Responses After Severe Acute Respiratory Syndrome Coronavirus 2 BA.2 and BA.2.12.1 Infection Do Not Neutralize BA.4 and BA.5 and Can Be Blunted by Nirmatrelvir/Ritonavir Treatment. Open forum infectious diseases 10 (4) (2023)
Aaron F Carlin, Alex E Clark, Aaron F Garretson, William Bray, Magali Porrachia, AsherLev T Santos, Tariq M Rana, Antoine Chaillon, Davey M Smith
Neutralizing Antibody Responses After Severe Acute Respiratory Syndrome Coronavirus 2 BA.2 and BA.2.12.1 Infection Do Not Neutralize BA.4 and BA.5 and Can Be Blunted by Nirmatrelvir/Ritonavir Treatment. Open forum infectious diseases 10 (4) (2023)
Yong Cheng, Alex E Clark, Wonjun Yim, Raina M Borum, Yu-Ci Chang, Zhicheng Jin, Tengyu He, Aaron F Carlin, Jesse V Jokerst
Protease-Responsive Potential-Tunable AIEgens for Cell Selective Imaging of TMPRSS2 and Accurate Inhibitor Screening. Analytical chemistry 95 (7) (2023)
Daniel Madriz Sørensen, Christian Büll, Thomas D Madsen, Erandi Lira-Navarrete, Thomas Mandel Clausen, Alex E Clark, Aaron F Garretson, Richard Torbjörn Gustav Karlsson, Johan F A Pijnenborg, Xin Yin, Rebecca Louise Miller, Sumit K Chanda, Thomas J Boltje, Katrine T Schjoldager, Sergey Y Vakhrushev, Adnan Halim, Jeffrey D Esko, Aaron F Carlin, Ramon Hurtado Guerrero, Roberto Weigert, Henrik Clausen, Yoshiki Narimatsu
Identification of global inhibitors of cellular glycosylation. Nature communications 14 (1) (2023)
Daniel Madriz Sørensen, Christian Büll, Thomas D Madsen, Erandi Lira-Navarrete, Thomas Mandel Clausen, Alex E Clark, Aaron F Garretson, Richard Torbjörn Gustav Karlsson, Johan F A Pijnenborg, Xin Yin, Rebecca Louise Miller, Sumit K Chanda, Thomas J Boltje, Katrine T Schjoldager, Sergey Y Vakhrushev, Adnan Halim, Jeffrey D Esko, Aaron F Carlin, Ramon Hurtado Guerrero, Roberto Weigert, Henrik Clausen, Yoshiki Narimatsu
Identification of global inhibitors of cellular glycosylation. Nature communications 14 (1) (2023)
Daniel Madriz Sørensen, Christian Büll, Thomas D Madsen, Erandi Lira-Navarrete, Thomas Mandel Clausen, Alex E Clark, Aaron F Garretson, Richard Torbjörn Gustav Karlsson, Johan F A Pijnenborg, Xin Yin, Rebecca Louise Miller, Sumit K Chanda, Thomas J Boltje, Katrine T Schjoldager, Sergey Y Vakhrushev, Adnan Halim, Jeffrey D Esko, Aaron F Carlin, Ramon Hurtado Guerrero, Roberto Weigert, Henrik Clausen, Yoshiki Narimatsu
Identification of global inhibitors of cellular glycosylation. Nature communications 14 (1) (2023)
Yong Cheng, Alex E Clark, Wonjun Yim, Raina M Borum, Yu-Ci Chang, Zhicheng Jin, Tengyu He, Aaron F Carlin, Jesse V Jokerst
Protease-Responsive Potential-Tunable AIEgens for Cell Selective Imaging of TMPRSS2 and Accurate Inhibitor Screening. Analytical chemistry 95 (7) (2023)
Aaron F Carlin, Alex E Clark, Aaron F Garretson, William Bray, Magali Porrachia, AsherLev T Santos, Tariq M Rana, Antoine Chaillon, Davey M Smith
Neutralizing Antibody Responses After Severe Acute Respiratory Syndrome Coronavirus 2 BA.2 and BA.2.12.1 Infection Do Not Neutralize BA.4 and BA.5 and Can Be Blunted by Nirmatrelvir/Ritonavir Treatment. Open forum infectious diseases 10 (4) (2023)
Daniel Madriz Sørensen, Christian Büll, Thomas D Madsen, Erandi Lira-Navarrete, Thomas Mandel Clausen, Alex E Clark, Aaron F Garretson, Richard Torbjörn Gustav Karlsson, Johan F A Pijnenborg, Xin Yin, Rebecca Louise Miller, Sumit K Chanda, Thomas J Boltje, Katrine T Schjoldager, Sergey Y Vakhrushev, Adnan Halim, Jeffrey D Esko, Aaron F Carlin, Ramon Hurtado Guerrero, Roberto Weigert, Henrik Clausen, Yoshiki Narimatsu
Identification of global inhibitors of cellular glycosylation. Nature communications 14 (1) (2023)
Yong Cheng, Alex E Clark, Wonjun Yim, Raina M Borum, Yu-Ci Chang, Zhicheng Jin, Tengyu He, Aaron F Carlin, Jesse V Jokerst
Protease-Responsive Potential-Tunable AIEgens for Cell Selective Imaging of TMPRSS2 and Accurate Inhibitor Screening. Analytical chemistry (2023)
Aaron F Carlin, Alex E Clark, Aaron F Garretson, William Bray, Magali Porrachia, AsherLev T Santos, Tariq M Rana, Antoine Chaillon, Davey M Smith
Neutralizing Antibody Responses After Severe Acute Respiratory Syndrome Coronavirus 2 BA.2 and BA.2.12.1 Infection Do Not Neutralize BA.4 and BA.5 and Can Be Blunted by Nirmatrelvir/Ritonavir Treatment. Open forum infectious diseases 10 (4) (2023)
Yong Cheng, Alex E Clark, Wonjun Yim, Raina M Borum, Yu-Ci Chang, Zhicheng Jin, Tengyu He, Aaron F Carlin, Jesse V Jokerst
Protease-Responsive Potential-Tunable AIEgens for Cell Selective Imaging of TMPRSS2 and Accurate Inhibitor Screening. Analytical chemistry 95 (7) (2023)
Aaron F Carlin, James R Beadle, Alex E Clark, Kendra L Gully, Fernando R Moreira, Ralph S Baric, Rachel L Graham, Nadejda Valiaeva, Sandra L Leibel, William Bray, Rachel E McMillan, Jonathan E Freshman, Aaron F Garretson, Rachael N McVicar, Tariq Rana, Xing-Quan Zhang, Joyce A Murphy, Robert T Schooley, Karl Y Hostetler
1- O -Octadecyl-2- O -benzyl- sn -glyceryl-3- phospho -GS-441524 (V2043). Evaluation of Oral V2043 in a Mouse Model of SARS-CoV-2 Infection and Synthesis and Antiviral Evaluation of Additional Phospholipid Esters with Enhanced Anti-SARS-CoV-2 Activity. Journal of medicinal chemistry (2023)
Bruna Andersen Pereira de Jesus, Anderson Albino Gomes, Alex E Clark, Tayse Andrade Rodrigues, Melissa Ledgerwood-Lee, Westley Van Zant, Howard Brickner, Meiqiao Wang, David L Blum, Maria B Cassera, Aaron F Carlin, Eliah S Aronoff-Spencer, Gustavo Felippe da Silva, Maria de Lourdes Borba Magalhães, Partha Ray
In Vitro Diagnostic Assay to Detect SARS-CoV-2-Neutralizing Antibody in Patient Sera Using Engineered ACE-2 Mini-Protein. Viruses 14 (12) (2022)
Emilie Branche, Ying-Ting Wang, Karla M Viramontes, Joan M Valls Cuevas, Jialei Xie, Fernanda Ana-Sosa-Batiz, Norazizah Shafee, Sascha H C Duttke, Rachel E McMillan, Alex E Clark, Michael N Nguyen, Aaron F Garretson, Jan J Crames, Nathan J Spann, Zhe Zhu, Jeremy N Rich, Deborah H Spector, Christopher Benner, Sujan Shresta, Aaron F Carlin
SREBP2-dependent lipid gene transcription enhances the infection of human dendritic cells by Zika virus. Nature communications 13 (1) (2022)
Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings. mSystems 7 (4) (2022)
Bruna Andersen Pereira de Jesus, Anderson Albino Gomes, Alex E Clark, Tayse Andrade Rodrigues, Melissa Ledgerwood-Lee, Westley Van Zant, Howard Brickner, Meiqiao Wang, David L Blum, Maria B Cassera, Aaron F Carlin, Eliah S Aronoff-Spencer, Gustavo Felippe da Silva, Maria de Lourdes Borba Magalhães, Partha Ray
In Vitro Diagnostic Assay to Detect SARS-CoV-2-Neutralizing Antibody in Patient Sera Using Engineered ACE-2 Mini-Protein. Viruses 14 (12) (2022)
Bruna Andersen Pereira de Jesus, Anderson Albino Gomes, Alex E Clark, Tayse Andrade Rodrigues, Melissa Ledgerwood-Lee, Westley Van Zant, Howard Brickner, Meiqiao Wang, David L Blum, Maria B Cassera, Aaron F Carlin, Eliah S Aronoff-Spencer, Gustavo Felippe da Silva, Maria de Lourdes Borba Magalhães, Partha Ray
In Vitro Diagnostic Assay to Detect SARS-CoV-2-Neutralizing Antibody in Patient Sera Using Engineered ACE-2 Mini-Protein. Viruses 14 (12) (2022)
Sascha H C Duttke, Sinem Beyhan, Rajendra Singh, Sonya Neal, Suganya Viriyakosol, Joshua Fierer, Theo N Kirkland, Jason E Stajich, Christopher W Benner, Aaron F Carlin
Decoding Transcription Regulatory Mechanisms Associated with Coccidioides immitis Phase Transition Using Total RNA. mSystems 7 (1) (2022)
Ruofan Li, Michael Mor, Bingting Ma, Alex E Clark, Joel Alter, Michal Werbner, Jamie Casey Lee, Sandra L Leibel, Aaron F Carlin, Moshe Dessau, Meital Gal-Tanamy, Ben A Croker, Ye Xiang, Natalia T Freund
Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies. Communications biology 5 (1) (2022)
Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight
Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings. mSystems 7 (4) (2022)
Bruna Andersen Pereira de Jesus, Anderson Albino Gomes, Alex E Clark, Tayse Andrade Rodrigues, Melissa Ledgerwood-Lee, Westley Van Zant, Howard Brickner, Meiqiao Wang, David L Blum, Maria B Cassera, Aaron F Carlin, Eliah S Aronoff-Spencer, Gustavo Felippe da Silva, Maria de Lourdes Borba Magalhães, Partha Ray
In Vitro Diagnostic Assay to Detect SARS-CoV-2-Neutralizing Antibody in Patient Sera Using Engineered ACE-2 Mini-Protein. Viruses 14 (12) (2022)
Gene W Yeo, Joy Xiang, Jasmine Mueller, En-Ching Luo, Brian Yee, Danielle Schafer, Jonathan Schmok, Frederick Tan, Katherine Rothamel, Rachael N McVicar, Elizabeth Kwong, Ben Croker, Krysten Jones, Hsuan-Lin Her, Chun-Yuan Chen, Anthony Vu, Wenhao Jin, Samuel Park, Phuong Le, Kristopher Brennan, Eric Kofman, Yanhua Li, Alexandra Tankka, Kevin Dong, Yan Song, Alex E Clark, Aaron F Carlin, Eric Van Nostrand, Sandra Leibel
Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions. Research square (2022)
Ming Xu, Jiajing Zhou, Yong Cheng, Zhicheng Jin, Alex E Clark, Tengyu He, Wonjun Yim, Yi Li, Yu-Ci Chang, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Michael D Todd, Jesse V Jokerst
A Self-Immolative Fluorescent Probe for Selective Detection of SARS-CoV-2 Main Protease. Analytical chemistry 94 (34) (2022)
Bruna Andersen Pereira de Jesus, Anderson Albino Gomes, Alex E Clark, Tayse Andrade Rodrigues, Melissa Ledgerwood-Lee, Westley Van Zant, Howard Brickner, Meiqiao Wang, David L Blum, Maria B Cassera, Aaron F Carlin, Eliah S Aronoff-Spencer, Gustavo Felippe da Silva, Maria de Lourdes Borba Magalhães, Partha Ray
In Vitro Diagnostic Assay to Detect SARS-CoV-2-Neutralizing Antibody in Patient Sera Using Engineered ACE-2 Mini-Protein. Viruses 14 (12) (2022)
Joseph G Gleeson, Lu Wang, David Sievert, Alex Clark, Hannah Federman, Benjamin Gastfriend, Eric V Shusta, Sean P Palecek, Aaron F Carlin
A Human 3D neural assembloid model for SARS-CoV-2 infection. Research square (2021)
Zintis Inde, Ben A Croker, Clarence Yapp, Gaurav N Joshi, Johan K E Spetz, Cameron Fraser, Xingping Qin, Le Xu, Brian Deskin, Elisa Ghelfi, Gabrielle Webb, Aaron F Carlin, Yanfang Peipei Zhu, Sandra L Leibel, Aaron F Garretson, Alex E Clark, Jason M Duran, Victor G Pretorius, Laura E Crotty Alexander, Chendi Li, Jamie Casey Lee, Chhinder Sodhi, David J Hackam, Xin Sun, Aaron N Hata, Lester Kobzik, Jeffrey W Miller, Jin-Ah Park, Douglas G Brownfield, Hongpeng Jia, Kristopher A Sarosiek
Age-dependent regulation of SARS-CoV-2 cell entry genes and cell death programs correlates with COVID-19 severity. Science advances 7 (34) (2021)
Aaron F Carlin, Sinem Beyhan, Jesús F Peña, Jason E Stajich, Suganya Viriyakosol, Joshua Fierer, Theo N Kirkland
Transcriptional Analysis of Coccidioides immitis Mycelia and Spherules by RNA Sequencing. Journal of fungi (Basel, Switzerland) 7 (5) (2021)
Oscar Antonio Ortega-Rivera, Sourabh Shukla, Matthew D Shin, Angela Chen, Veronique Beiss, Miguel A Moreno-Gonzalez, Yi Zheng, Alex E Clark, Aaron F Carlin, Elizabathe Davis, Nicole F Steinmetz
Cowpea Mosaic Virus Nanoparticle Vaccine Candidates Displaying Peptide Epitopes Can Neutralize the Severe Acute Respiratory Syndrome Coronavirus. ACS infectious diseases 7 (11) (2021)
Lu Wang, David Sievert, Alex E Clark, Sangmoon Lee, Hannah Federman, Benjamin D Gastfriend, Eric V Shusta, Sean P Palecek, Aaron F Carlin, Joseph G Gleeson
A human three-dimensional neural-perivascular 'assembloid' promotes astrocytic development and enables modeling of SARS-CoV-2 neuropathology. Nature medicine 27 (9) (2021)
Sarah Huff, Indrasena Reddy Kummetha, Shashi Kant Tiwari, Matthew B Huante, Alex E Clark, Shaobo Wang, William Bray, Davey Smith, Aaron F Carlin, Mark Endsley, Tariq M Rana
Discovery and Mechanism of SARS-CoV-2 Main Protease Inhibitors. Journal of medicinal chemistry (2021)
Sang Ho Park, Haley Siddiqi, Daniela V Castro, Anna A De Angelis, Aaron L Oom, Charlotte A Stoneham, Mary K Lewinski, Alex E Clark, Ben A Croker, Aaron F Carlin, John Guatelli, Stanley J Opella
Interactions of SARS-CoV-2 envelope protein with amilorides correlate with antiviral activity. PLoS pathogens 17 (5) (2021)
Michael Mor, Michal Werbner, Joel Alter, Modi Safra, Elad Chomsky, Jamie C Lee, Smadar Hada-Neeman, Ksenia Polonsky, Cameron J Nowell, Alex E Clark, Anna Roitburd-Berman, Noam Ben-Shalom, Michal Navon, Dor Rafael, Hila Sharim, Evgeny Kiner, Eric R Griffis, Jonathan M Gershoni, Oren Kobiler, Sandra Lawrynowicz Leibel, Oren Zimhony, Aaron F Carlin, Gur Yaari, Moshe Dessau, Meital Gal-Tanamy, David Hagin, Ben A Croker, Natalia T Freund
Multi-clonal SARS-CoV-2 neutralization by antibodies isolated from severe COVID-19 convalescent donors. PLoS pathogens 17 (2) (2021)
Aaron F Carlin, Jinsheng Wen, Edward A Vizcarra, Melanie McCauley, Antoine Chaillon, Kevan Akrami, Cheryl Kim, Annie Elong Ngono, Maria Luz Lara-Marquez, Davey M Smith, Christopher K Glass, Robert T Schooley, Christopher Benner, Sujan Shresta
A longitudinal systems immunologic investigation of acute Zika virus infection in an individual infected while traveling to Caracas, Venezuela. PLoS neglected tropical diseases 12 (12) (2018)
Aaron F Carlin, Edward A Vizcarra, Emilie Branche, Karla M Viramontes, Lester Suarez-Amaran, Klaus Ley, Sven Heinz, Christopher Benner, Sujan Shresta, Christopher K Glass
Deconvolution of pro- and antiviral genomic responses in Zika virus-infected and bystander macrophages. Proceedings of the National Academy of Sciences of the United States of America 115 (39) (2018)