Gavin Sherlock

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 39

Top Venues

Nucleic acids research

bioRxiv : the preprint server for biology

Nature communications

Journal of molecular evolution

Stanford University

University of Manchester (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stanford University Oct 01 2010

United States

Associate Professor :: Genetics

Stanford University Jan 01 2004 - Sep 30 2010

United States

Assistant Professor :: Genetics

Stanford University

United States

Postdoctoral Researcher :: Genetics

Cold Spring Harbor Laboratory

United States

Postdoctoral Researcher

Education History

University of Manchester

United Kingdom

PHD

University of Manchester

United Kingdom

BSC

Publications

Weiyi Li, Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Han Mei, Po-Hsiang Hung, Biju Parekkadan, Gavin Sherlock, Sasha F Levy
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. Nucleic acids research (2024)
Weiyi Li, Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Han Mei, Po-Hsiang Hung, Biju Parekkadan, Gavin Sherlock, Sasha F Levy
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. Nucleic acids research 52 (10) (2024)
Takeshi Matsui, Po-Hsiang Hung, Han Mei, Xianan Liu, Fangfei Li, John Collins, Weiyi Li, Darach Miller, Neil Wilson, Esteban Toro, Geoffrey J Taghon, Gavin Sherlock, Sasha F Levy
High-throughput DNA engineering by mating bacteria. bioRxiv : the preprint server for biology (2024)
Weiyi Li, Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Han Mei, Po-Hsiang Hung, Biju Parekkadan, Gavin Sherlock, Sasha F Levy
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. Nucleic acids research 52 (10) (2024)
Danica T Schmidtke, Angela Shang-Mei Hickey, Ivan Liachko, Gavin Sherlock, Ami Siddharth Bhatt
Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle. bioRxiv : the preprint server for biology (2024)
Jana Helsen, Md Hashim Reza, Ricardo Carvalho, Gavin Sherlock, Gautam Dey
Spindle architecture constrains karyotype evolution. Nature cell biology (2024)
Jana Helsen, Md Hashim Reza, Ricardo Carvalho, Gavin Sherlock, Gautam Dey
Spindle architecture constrains karyotype evolution. Nature cell biology (2024)
Weiyi Li, Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Han Mei, Po-Hsiang Hung, Biju Parekkadan, Gavin Sherlock, Sasha F Levy
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. Nucleic acids research 52 (10) (2024)
Weiyi Li, Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Han Mei, Po-Hsiang Hung, Biju Parekkadan, Gavin Sherlock, Sasha F Levy
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. Nucleic acids research 52 (10) (2024)
Danica T Schmidtke, Angela Shang-Mei Hickey, Ivan Liachko, Gavin Sherlock, Ami Siddharth Bhatt
Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle. bioRxiv : the preprint server for biology (2024)
Jana Helsen, Md Hashim Reza, Ricardo Carvalho, Gavin Sherlock, Gautam Dey
Spindle architecture constrains karyotype evolution. Nature cell biology (2024)
Weiyi Li, Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Han Mei, Po-Hsiang Hung, Biju Parekkadan, Gavin Sherlock, Sasha F Levy
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. Nucleic acids research 52 (10) (2024)
Weiyi Li, Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Han Mei, Po-Hsiang Hung, Biju Parekkadan, Gavin Sherlock, Sasha F Levy
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. Nucleic acids research (2024)
Vivian Chen, Milo S Johnson, Lucas Hérissant, Parris T Humphrey, David C Yuan, Yuping Li, Atish Agarwala, Samuel B Hoelscher, Dmitri A Petrov, Michael M Desai, Gavin Sherlock
Evolution of haploid and diploid populations reveals common, strong, and variable pleiotropic effects in non-home environments. eLife 12 (2023)
Fangfei Li, Aditya Mahadevan, Gavin Sherlock
An improved algorithm for inferring mutational parameters from bar-seq evolution experiments. BMC genomics 24 (1) (2023)
Leonid Kruglyak, Andreas Beyer, Joshua S Bloom, Jan Großbach, Tami D Lieberman, Christopher P Mancuso, Matthew S Rich, Gavin Sherlock, Craig D Kaplan
Insufficient evidence for non-neutrality of synonymous mutations. Nature 616 (7957) (2023)
Fangfei Li, Jason Tarkington, Gavin Sherlock
Fit-Seq2.0: An Improved Software for High-Throughput Fitness Measurements Using Pooled Competition Assays. Journal of molecular evolution (2023)
Gabriela Muller, Victor R de Godoy, Marcelo G Dário, Eduarda H Duval, Sergio Luiz Alves, Augusto Bücker, Carlos A Rosa, Barbara L Dunn, Gavin Sherlock, Boris Ugarte Stambuk
Improved Sugarcane-Based Fermentation Processes by an Industrial Fuel-Ethanol Yeast Strain. Journal of fungi (Basel, Switzerland) 9 (8) (2023)
Fangfei Li, Jason Tarkington, Gavin Sherlock
Fit-Seq2.0: An Improved Software for High-Throughput Fitness Measurements Using Pooled Competition Assays. Journal of molecular evolution (2023)
Fangfei Li, Aditya Mahadevan, Gavin Sherlock
An improved algorithm for inferring mutational parameters from bar-seq evolution experiments. BMC genomics 24 (1) (2023)
Michelle Hays, Katja Schwartz, Danica T Schmidtke, Dimitra Aggeli, Gavin Sherlock
Paths to adaptation under fluctuating nitrogen starvation: The spectrum of adaptive mutations in Saccharomyces cerevisiae is shaped by retrotransposons and microhomology-mediated recombination. PLoS genetics 19 (5) (2023)
Fangfei Li, Aditya Mahadevan, Gavin Sherlock
An improved algorithm for inferring mutational parameters from bar-seq evolution experiments. BMC genomics 24 (1) (2023)
Weiyi Li, Darach Miller, Xianan Liu, Lorenzo Tosi, Lamia Chkaiban, Han Mei, Po-Hsiang Hung, Biju Parekkadan, Gavin Sherlock, Sasha F Levy
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. bioRxiv : the preprint server for biology (2023)
Jana Helsen, Md Hashim Reza, Gavin Sherlock, Gautam Dey
Spindle architecture constrains karyotype in budding yeast. bioRxiv : the preprint server for biology (2023)
Darren K Lam, Gavin Sherlock
Yca1 metacaspase: Diverse functions determine how yeast live and let die. FEMS yeast research (2023)
Fangfei Li, Jason Tarkington, Gavin Sherlock
Fit-Seq2.0: An Improved Software for High-Throughput Fitness Measurements Using Pooled Competition Assays. Journal of molecular evolution (2023)
Dimitra Aggeli, Yuping Li, Gavin Sherlock
Changes in the distribution of fitness effects and adaptive mutational spectra following a single first step towards adaptation. Nature communications 12 (1) (2021)
Sébastien Boyer, Lucas Hérissant, Gavin Sherlock
Adaptation is influenced by the complexity of environmental change during evolution in a dynamic environment. PLoS genetics 17 (1) (2021)
Benjamin A Siranosian, Fiona B Tamburini, Gavin Sherlock, Ami Siddharth Bhatt
Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages. Nature communications 11 (1) (2020)
Benjamin A Siranosian, Fiona B Tamburini, Gavin Sherlock, Ami Siddharth Bhatt
Author Correction: Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages. Nature communications 11 (1) (2020)
Yuping Li, Dmitri A Petrov, Gavin Sherlock
Single nucleotide mapping of trait space reveals Pareto fronts that constrain adaptation. Nature ecology & evolution 3 (11) (2019)
Mia Jaffe, Adam Dziulko, Justin D Smith, Robert P St Onge, Sasha F Levy, Gavin Sherlock
Improved discovery of genetic interactions using CRISPRiSeq across multiple environments. Genome research 29 (4) (2019)
Jamie R Blundell, Katja Schwartz, Danielle Francois, Daniel S Fisher, Gavin Sherlock, Sasha F Levy
The dynamics of adaptive genetic diversity during the early stages of clonal evolution. Nature ecology & evolution 3 (2) (2018)
Jeanne Ropars, Corinne Maufrais, Dorothée Diogo, Marina Marcet-Houben, Aurélie Perin, Natacha Sertour, Kevin Mosca, Emmanuelle Permal, Guillaume Laval, Christiane Bouchier, Laurence Ma, Katja Schwartz, Kerstin Voelz, Robin C May, Julie Poulain, Christophe Battail, Patrick Wincker, Andrew M Borman, Anuradha Chowdhary, Shangrong Fan, Soo Hyun Kim, Patrice Le Pape, Orazio Romeo, Jong Hee Shin, Toni Gabaldon, Gavin Sherlock, Marie-Elisabeth Bougnoux, Christophe D'Enfert
Gene flow contributes to diversification of the major fungal pathogen Candida albicans. Nature communications 9 (1) (2018)
Yuan O Zhu, Gavin Sherlock, Dmitri A Petrov
Extremely Rare Polymorphisms in Saccharomyces cerevisiae Allow Inference of the Mutational Spectrum. PLoS genetics 13 (1) (2017)
Mia Jaffe, Gavin Sherlock, Sasha F Levy
iSeq: A New Double-Barcode Method for Detecting Dynamic Genetic Interactions in Yeast. G3 (Bethesda, Md.) 7 (1) (2017)
Gavin Sherlock, Dmitri A Petrov
Seeking Goldilocks During Evolution of Drug Resistance. PLoS biology 15 (2) (2017)
Diamantis Sellis, Daniel J Kvitek, Barbara L Dunn, Gavin Sherlock, Dmitri A Petrov
Heterozygote Advantage Is a Common Outcome of Adaptation in Saccharomyces cerevisiae. Genetics 203 (3) (2016)
Yuan O Zhu, Gavin Sherlock, Dmitri A Petrov
Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation. G3 (Bethesda, Md.) 6 (8) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Gavin Sherlock