Giovanni Palla

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 10

Top Topics

Top Venues

Research square

Bioinformatics (Oxford, England)

Nature biotechnology

Histochemistry and cell biology

This page only lists publications with an associated author ORCID identifier.

Publications

Malte Daniel Luecken, Scott A Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Nikolay S Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael E Vinyard, D S Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Borisovna Botvinnik, Louise Deconinck, Kai Waldrant, null null, Jonathan M Bloom, Angela Oliveira Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Mayar Ali, Merel Kuijs, Soroor Hediyeh-Zadeh, Tim Treis, Karin Hrovatin, Giovanni Palla, Anna C Schaar, Fabian Joachim Theis
GraphCompass: spatial metrics for differential analyses of cell organization across conditions. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Malte Daniel Luecken, Scott A Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Nikolay S Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael E Vinyard, D S Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Borisovna Botvinnik, Louise Deconinck, Kai Waldrant, null null, Jonathan M Bloom, Angela Oliveira Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Mayar Ali, Merel Kuijs, Soroor Hediyeh-Zadeh, Tim Treis, Karin Hrovatin, Giovanni Palla, Anna C Schaar, Fabian Joachim Theis
GraphCompass: spatial metrics for differential analyses of cell organization across conditions. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Mayar Ali, Merel Kuijs, Soroor Hediyeh-Zadeh, Tim Treis, Karin Hrovatin, Giovanni Palla, Anna C Schaar, Fabian Joachim Theis
GraphCompass: spatial metrics for differential analyses of cell organization across conditions. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Malte Daniel Luecken, Scott A Gigante, Daniel Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael Vinyard, Daniel Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Botvinnik, Louise Deconinck, Kai Waldrant, Bastian Rieck, Constantin Ahlmann-Eltze, Eduardo da Veiga Beltrame, Andrew Benz, Carmen Bravo González-Blas, Ann Chen, Benjamin DeMeo, Can Ergen, Swann Floc'hlay, Adam Gayoso, Stephanie C Hicks, Yuge Ji, Vitalii Kleshchevnikov, Gioele La Manno, Maximilian Lombardo, Romain Lopez, Dario Righelli, Hirak Sarkar, Valentine Svensson, Alexander Tong, Galen Xing, Chenling Xu, Jonathan Bloom, Angela Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jordao Bragantini, Jackson M Brown, Jean-Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Koji Kyoda, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Dominik Lindner, Melissa Linkert, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Luca Marconato, Matthew McCormick, Merlin Lange, Khaled Mohamed, William Moore, Nils Norlin, Wei Ouyang, Buğra Özdemir, Giovanni Palla, Constantin Pape, Lucas Pelkmans, Tobias Pietzsch, Stephan Preibisch, Martin Prete, Norman Rzepka, Sameeul Samee, Nicholas J Schaub, Hythem Sidky, Ahmet Can Solak, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Isaac Virshup, Petr Walczysko, Alan M Watson, Erin Weisbart, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Beth A Cimini, Nils Gehlenborg, Muzlifah A Haniffa, Nathan A Hotaling, Shuichi Onami, Loïc Alain Royer, Stephan Saalfeld, Oliver Stegle, Fabian Joachim Theis, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochemistry and cell biology (2023)
Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, null null, Bonnie Berger, Dana Pe'er, Aviv Regev, Sarah A Teichmann, Francesca Finotello, F Alexander Wolf, Nir Yosef, Oliver Stegle, Fabian Joachim Theis
The scverse project provides a computational ecosystem for single-cell omics data analysis. Nature biotechnology (2023)
Giovanni Palla, Hannah Spitzer, Michal Klein, David S Fischer, Anna Christina Schaar, Louis Benedikt Kuemmerle, Sergei Rybakov, Ignacio L Ibarra, Olle Holmberg, Isaac Virshup, Mohammad Lotfollahi, Sabrina Richter, Fabian Joachim Theis
Squidpy: a scalable framework for spatial omics analysis. Nature methods 19 (2) (2022)
Giovanni Palla, David S Fischer, Aviv Regev, Fabian Joachim Theis
Spatial components of molecular tissue biology. Nature biotechnology 40 (3) (2022)