Erik van Nimwegen

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 20

Top Topics

Gene Expression

Genome Wide Association Study

Capillary Electrophoresis

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

PLoS computational biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Maciej Bak, Erik van Nimwegen, Ian U Kouzel, Tamer Gur, Ralf Schmidt, Mihaela Zavolan, Andreas J Gruber
MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer. Nature communications 15 (1) (2024)
Pascal Grobecker, Thomas Sakoparnig, Erik van Nimwegen
Identifying cell states in single-cell RNA-seq data at statistically maximal resolution. PLoS computational biology 20 (7) (2024)
Pascal Grobecker, Thomas Sakoparnig, Erik van Nimwegen
Identifying cell states in single-cell RNA-seq data at statistically maximal resolution. PLoS computational biology 20 (7) (2024)
Maciej Bak, Erik van Nimwegen, Ian U Kouzel, Tamer Gur, Ralf Schmidt, Mihaela Zavolan, Andreas J Gruber
MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer. Nature communications 15 (1) (2024)
Maciej Bak, Erik van Nimwegen, Ian U Kouzel, Tamer Gur, Ralf Schmidt, Mihaela Zavolan, Andreas J Gruber
MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer. Nature communications 15 (1) (2024)
Pascal Grobecker, Thomas Sakoparnig, Erik van Nimwegen
Identifying cell states in single-cell RNA-seq data at statistically maximal resolution. PLoS computational biology 20 (7) (2024)
Daan Hugo de Groot, Age J Tjalma, Frank J Bruggeman, Erik van Nimwegen
Effective bet-hedging through growth rate dependent stability. Proceedings of the National Academy of Sciences of the United States of America 120 (8) (2023)
Daan Hugo de Groot, Age J Tjalma, Frank J Bruggeman, Erik van Nimwegen
Effective bet-hedging through growth rate dependent stability. Proceedings of the National Academy of Sciences of the United States of America 120 (8) (2023)
Daan Hugo de Groot, Age J Tjalma, Frank J Bruggeman, Erik van Nimwegen
Effective bet-hedging through growth rate dependent stability. Proceedings of the National Academy of Sciences of the United States of America 120 (8) (2023)
Daan Hugo de Groot, Age J Tjalma, Frank J Bruggeman, Erik van Nimwegen
Effective bet-hedging through growth rate dependent stability. Proceedings of the National Academy of Sciences of the United States of America 120 (8) (2023)
Daan Hugo de Groot, Age J Tjalma, Frank J Bruggeman, Erik van Nimwegen
Effective bet-hedging through growth rate dependent stability. Proceedings of the National Academy of Sciences of the United States of America 120 (8) (2023)
Damir Baranasic, Matthias Hörtenhuber, Piotr J Balwierz, Tobias Zehnder, Abdul Kadir Mukarram, Chirag Nepal, Csilla Varnai, Yavor Hadzhiev, Ada Jimenez Gonzalez, Nan Li, Joseph Wragg, Fabio M D'Orazio, Dorde Relic, Mikhail Pachkov, Noelia Díaz, Benjamín Hernández-Rodríguez, Zelin Chen, Marcus Stoiber, Michael X Dong, Irene Stevens, Samuel E Ross, Anne Eagle, Ryan Martin, Oluwapelumi Obasaju, Sepand Rastegar, Alison C McGarvey, Wolfgang Kopp, Emily V Chambers, Dennis Wang, Hyejeong R Kim, Rafael D Acemel, Silvia Naranjo, Maciej Łapiński, Vanessa Chong-Morrison, Sinnakaruppan Mathavan, Bernard Peers, Tatjana Sauka-Spengler, Martin Vingron, Piero Carnici, Uwe Ohler, Scott Allen Lacadie, Jason W Sinclair, Cecilia Lanny Winata, Fredericus J M van Eeden, Juan M Vaquerizas, José Luis Gómez-Skarmeta, Daria Onichtchouk, Ben James Brown, Ozren Bogdanovic, Erik van Nimwegen, Monte Westerfield, Fiona C Wardle, Carsten O Daub, Boris Lenhard, Ferenc Müller
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature genetics 54 (7) (2022)
Tanzila Mukhtar, Jeremie Breda, Manal A Adam, Marcelo Boareto, Pascal Grobecker, Zahra Karimaddini, Alice Grison, Katja Eschbach, Ramakrishnan Chandrasekhar, Swen Vermeul, Michal Okoniewski, Mikhail Pachkov, Corey C Harwell, Suzana Atanasoski, Christian Beisel, Dagmar Iber, Erik van Nimwegen, Verdon Taylor
Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis. The EMBO journal (2022)
Jeremie Breda, Mihaela Zavolan, Erik van Nimwegen
Bayesian inference of gene expression states from single-cell RNA-seq data. Nature biotechnology 39 (8) (2021)
Arantxa Urchueguía, Luca Galbusera, Dany Chauvin, Gwendoline Bellement, Thomas Julou, Erik van Nimwegen
Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network. PLoS biology 19 (12) (2021)
Thomas Sakoparnig, Christopher M Field, Erik van Nimwegen
Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species. eLife 10 (2021)
Luca Galbusera, Gwendoline Bellement-Theroue, Arantxa Urchueguia, Thomas Julou, Erik van Nimwegen
Using fluorescence flow cytometry data for single-cell gene expression analysis in bacteria. PloS one 15 (10) (2020)
Tanzila Mukhtar, Jeremie Breda, Alice Grison, Zahra Karimaddini, Pascal Grobecker, Dagmar Iber, Christian Beisel, Erik van Nimwegen, Verdon Taylor
Tead transcription factors differentially regulate cortical development. Scientific reports 10 (1) (2020)
Thomas Julou, Ludovit Zweifel, Diana Blank, Athos Fiori, Erik van Nimwegen
Subpopulations of sensorless bacteria drive fitness in fluctuating environments. PLoS biology 18 (12) (2020)
Saeed Omidi, Mihaela Zavolan, Mikhail Pachkov, Jeremie Breda, Severin Berger, Erik van Nimwegen
Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors. PLoS computational biology 13 (7) (2017)