Martin Vingron

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 29

Top Topics

Genome Wide Association

Transcription Factor

Dna Methylation

Top Venues

Nature cell biology

Nature genetics

Nucleic acids research

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Julian Naderi, Alexandre P Magalhaes, Gözde Kibar, Grégoire Stik, Yaotian Zhang, Sebastian D Mackowiak, Hannah M Wieler, Francesca Rossi, René Buschow, Marie Christou-Kent, Marc Alcoverro-Bertran, Thomas Graf, Martin Vingron, Denes Hnisz
An activity-specificity trade-off encoded in human transcription factors. Nature cell biology (2024)
Yan Zhao, Clemens Kohl, Daniel Rosebrock, Qinan Hu, Yuhui Hu, Martin Vingron
CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics. Nucleic acids research (2024)
Vera A van der Weijden, Maximilian Stötzel, Dhanur P Iyer, Beatrix Fauler, Elzbieta Gralinska, Mohammed Shahraz, David Meierhofer, Martin Vingron, Steffen Rulands, Theodore Alexandrov, Thorsten Mielke, Aydan Bulut-Karslioğlu
FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature cell biology 26 (2) (2024)
Vera A van der Weijden, Maximilian Stötzel, Dhanur P Iyer, Beatrix Fauler, Elzbieta Gralinska, Mohammed Shahraz, David Meierhofer, Martin Vingron, Steffen Rulands, Theodore Alexandrov, Thorsten Mielke, Aydan Bulut-Karslioğlu
FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature cell biology (2024)
Vera A van der Weijden, Maximilian Stötzel, Dhanur P Iyer, Beatrix Fauler, Elzbieta Gralinska, Mohammed Shahraz, David Meierhofer, Martin Vingron, Steffen Rulands, Theodore Alexandrov, Thorsten Mielke, Aydan Bulut-Karslioğlu
FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature cell biology 26 (2) (2024)
Vera A van der Weijden, Maximilian Stötzel, Dhanur P Iyer, Beatrix Fauler, Elzbieta Gralinska, Mohammed Shahraz, David Meierhofer, Martin Vingron, Steffen Rulands, Theodore Alexandrov, Thorsten Mielke, Aydan Bulut-Karslioğlu
FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature cell biology 26 (2) (2024)
Vera A van der Weijden, Maximilian Stötzel, Dhanur P Iyer, Beatrix Fauler, Elzbieta Gralinska, Mohammed Shahraz, David Meierhofer, Martin Vingron, Steffen Rulands, Theodore Alexandrov, Thorsten Mielke, Aydan Bulut-Karslioğlu
FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature cell biology 26 (2) (2024)
Maximilian Stötzel, Chieh-Yu Cheng, Ibrahim A IIik, Abhishek Sampath Kumar, Persia Akbari Omgba, Vera A van der Weijden, Yufei Zhang, Martin Vingron, Alexander Meissner, Tugce Aktas, Helene Kretzmer, Aydan Bulut-Karslioğlu
TET activity safeguards pluripotency throughout embryonic dormancy. Nature structural & molecular biology (2024)
Julian Naderi, Alexandre P Magalhaes, Gözde Kibar, Grégoire Stik, Yaotian Zhang, Sebastian D Mackowiak, Hannah M Wieler, Francesca Rossi, René Buschow, Marie Christou-Kent, Marc Alcoverro-Bertran, Thomas Graf, Martin Vingron, Denes Hnisz
An activity-specificity trade-off encoded in human transcription factors. Nature cell biology 26 (8) (2024)
Julian Naderi, Alexandre P Magalhaes, Gözde Kibar, Grégoire Stik, Yaotian Zhang, Sebastian D Mackowiak, Hannah M Wieler, Francesca Rossi, René Buschow, Marie Christou-Kent, Marc Alcoverro-Bertran, Thomas Graf, Martin Vingron, Denes Hnisz
An activity-specificity trade-off encoded in human transcription factors. Nature cell biology 26 (8) (2024)
Yan Zhao, Clemens Kohl, Daniel Rosebrock, Qinan Hu, Yuhui Hu, Martin Vingron
CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics. Nucleic acids research 52 (13) (2024)
Vera A van der Weijden, Maximilian Stötzel, Dhanur P Iyer, Beatrix Fauler, Elzbieta Gralinska, Mohammed Shahraz, David Meierhofer, Martin Vingron, Steffen Rulands, Theodore Alexandrov, Thorsten Mielke, Aydan Bulut-Karslioğlu
FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature cell biology 26 (2) (2024)
Yan Zhao, Clemens Kohl, Daniel Rosebrock, Qinan Hu, Yuhui Hu, Martin Vingron
CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics. Nucleic acids research 52 (13) (2024)
Julian Naderi, Alexandre P Magalhaes, Gözde Kibar, Grégoire Stik, Yaotian Zhang, Sebastian D Mackowiak, Hannah M Wieler, Francesca Rossi, René Buschow, Marie Christou-Kent, Marc Alcoverro-Bertran, Thomas Graf, Martin Vingron, Denes Hnisz
An activity-specificity trade-off encoded in human transcription factors. Nature cell biology 26 (8) (2024)
Daniel Rosebrock, Sneha Arora, Naresh Mutukula, Rotem Volkman, Elzbieta Gralinska, Anastasios Balaskas, Amèlia Aragonés Hernández, René Buschow, Björn Brändl, Franz-Josef Müller, Peter F Arndt, Martin Vingron, Yechiel Elkabetz
Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature cell biology 24 (6) (2022)
Robert Schöpflin, Uirá Souto Melo, Hossein Moeinzadeh, David Heller, Verena Laupert, Jakob Hertzberg, Manuel Holtgrewe, Nico Alavi, Marius-Konstantin Klever, Julius Jungnitsch, Emel Comak, Seval Türkmen, Denise Horn, Yannis Duffourd, Laurence Faivre, Patrick Callier, Damien Sanlaville, Orsetta Zuffardi, Romano Tenconi, Nehir Edibe Kurtas, Sabrina Giglio, Bettina Prager, Anna Latos-Bielenska, Ida Vogel, Merete Bugge, Niels Tommerup, Malte Spielmann, Antonio Vitobello, Vera M Kalscheuer, Martin Vingron, Stefan Mundlos
Integration of Hi-C with short and long-read genome sequencing reveals the structure of germline rearranged genomes. Nature communications 13 (1) (2022)
Damir Baranasic, Matthias Hörtenhuber, Piotr J Balwierz, Tobias Zehnder, Abdul Kadir Mukarram, Chirag Nepal, Csilla Varnai, Yavor Hadzhiev, Ada Jimenez Gonzalez, Nan Li, Joseph Wragg, Fabio M D'Orazio, Dorde Relic, Mikhail Pachkov, Noelia Díaz, Benjamín Hernández-Rodríguez, Zelin Chen, Marcus Stoiber, Michael X Dong, Irene Stevens, Samuel E Ross, Anne Eagle, Ryan Martin, Oluwapelumi Obasaju, Sepand Rastegar, Alison C McGarvey, Wolfgang Kopp, Emily V Chambers, Dennis Wang, Hyejeong R Kim, Rafael D Acemel, Silvia Naranjo, Maciej Łapiński, Vanessa Chong-Morrison, Sinnakaruppan Mathavan, Bernard Peers, Tatjana Sauka-Spengler, Martin Vingron, Piero Carnici, Uwe Ohler, Scott Allen Lacadie, Jason W Sinclair, Cecilia Lanny Winata, Fredericus J M van Eeden, Juan M Vaquerizas, José Luis Gómez-Skarmeta, Daria Onichtchouk, Ben James Brown, Ozren Bogdanovic, Erik van Nimwegen, Monte Westerfield, Fiona C Wardle, Carsten O Daub, Boris Lenhard, Ferenc Müller
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature genetics 54 (7) (2022)
Martyna Gajos, Olga Jasnovidova, Alena van Bömmel, Susanne Freier, Martin Vingron, Andreas Mayer
Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic acids research 49 (8) (2021)
M-Hossein Moeinzadeh, Jun Yang, Evgeny Muzychenko, Giuseppe Gallone, David Heller, Knut Reinert, Stefan Haas, Martin Vingron
Ranbow: A fast and accurate method for polyploid haplotype reconstruction. PLoS computational biology 16 (5) (2020)
Francisca M Real, Stefan A Haas, Paolo Franchini, Peiwen Xiong, Oleg Simakov, Heiner Kuhl, Robert Schöpflin, David Heller, M-Hossein Moeinzadeh, Verena Heinrich, Thomas Krannich, Annkatrin Bressin, Michaela Friederike Hartmann, Stefan A Wudy, Dina K N Dechmann, Alicia Hurtado, Francisco Javier Barrionuevo, Magdalena Schindler, Izabela Harabula, Marco Osterwalder, Michael Hiller, Lars Wittler, Axel Visel, Bernd Timmermann, Axel Meyer, Martin Vingron, Rafael Jiménez, Stefan Mundlos, Darío G Lupiáñez
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality. Science (New York, N.Y.) 370 (6513) (2020)
Katerina Kraft, Andreas Magg, Verena Heinrich, Christina Riemenschneider, Robert Schöpflin, Julia Markowski, Daniel M Ibrahim, Rocío Acuna-Hidalgo, Alexandra Despang, Guillaume Andrey, Lars Wittler, Bernd Timmermann, Martin Vingron, Stefan Mundlos
Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature cell biology 21 (3) (2019)
Alexandra Despang, Robert Schöpflin, Martin Franke, Salaheddine Ali, Ivana Jerkovic, Christina Paliou, Wing-Lee Chan, Bernd Timmermann, Lars Wittler, Martin Vingron, Stefan Mundlos, Daniel M Ibrahim
Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture. Nature genetics 51 (8) (2019)
Anna Ramisch, Verena Heinrich, Laura V Glaser, Alisa Fuchs, Xinyi Yang, Philipp Benner, Robert Schöpflin, Na Li, Sarah Kinkley, Anja Römer-Hillmann, John Longinotto, Steffen Heyne, Beate Czepukojc, Sonja M Kessler, Alexandra K Kiemer, Cristina Cadenas, Laura Arrigoni, Nina Gasparoni, Thomas Manke, Thomas Pap, John A Pospisilik, Jan Hengstler, Jörn Walter, Sebastiaan H Meijsing, Ho-Ryun Chung, Martin Vingron
CRUP: a comprehensive framework to predict condition-specific regulatory units. Genome biology 20 (1) (2019)
Julie George, Vonn Walter, Martin Peifer, Ludmil B Alexandrov, Danila Seidel, Frauke Leenders, Lukas Maas, Christian Müller, Ilona Dahmen, Tiffany M Delhomme, Maude Ardin, Noemie Leblay, Graham Byrnes, Ruping Sun, Aurélien De Reynies, Anne McLeer-Florin, Graziella Bosco, Florian Malchers, Roopika Menon, Janine Altmüller, Christian Becker, Peter Nürnberg, Viktor Achter, Ulrich Lang, Peter M Schneider, Magdalena Bogus, Matthew G Soloway, Matthew D Wilkerson, Yupeng Cun, James D McKay, Denis Moro-Sibilot, Christian G Brambilla, Sylvie Lantuejoul, Nicolas Lemaitre, Alex Soltermann, Walter Weder, Verena Tischler, Odd Terje Brustugun, Marius Lund-Iversen, Åslaug Helland, Steinar Solberg, Sascha Ansén, Gavin Wright, Benjamin Solomon, Luca Roz, Ugo Pastorino, Iver Petersen, Joachim H Clement, Jörg Sänger, Jürgen Wolf, Martin Vingron, Thomas Zander, Sven Perner, William D Travis, Stefan A Haas, Magali Olivier, Matthieu Foll, Reinhard Büttner, David Neil Hayes, Elisabeth Brambilla, Lynnette Fernandez-Cuesta, Roman K Thomas
Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors. Nature communications 9 (1) (2018)
Simona Bianco, Darío G Lupiáñez, Andrea Maria Chiariello, Carlo Annunziatella, Katerina Kraft, Robert Schöpflin, Lars Wittler, Guillaume Andrey, Martin Vingron, Ana Pombo, Stefan Mundlos, Mario Nicodemi
Polymer physics predicts the effects of structural variants on chromatin architecture. Nature genetics 50 (5) (2018)
Xinyi Yang, Martin Vingron
Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions. BMC biology 16 (1) (2018)
Bjørt K Kragesteen, Malte Spielmann, Christina Paliou, Verena Heinrich, Robert Schöpflin, Andrea Esposito, Carlo Annunziatella, Simona Bianco, Andrea M Chiariello, Ivana Jerkovic, Izabela Harabula, Philine Guckelberger, Michael Pechstein, Lars Wittler, Wing-Lee Chan, Martin Franke, Darío G Lupiáñez, Katerina Kraft, Bernd Timmermann, Martin Vingron, Axel Visel, Mario Nicodemi, Stefan Mundlos, Guillaume Andrey
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis. Nature genetics 50 (10) (2018)
Jun Yang, M-Hossein Moeinzadeh, Heiner Kuhl, Johannes Helmuth, Peng Xiao, Stefan Haas, Guiling Liu, Jianli Zheng, Zhe Sun, Weijuan Fan, Gaifang Deng, Hongxia Wang, Fenhong Hu, Shanshan Zhao, Alisdair R Fernie, Stefan Boerno, Bernd Timmermann, Peng Zhang, Martin Vingron
Haplotype-resolved sweet potato genome traces back its hexaploidization history. Nature plants 3 (9) (2017)
Anja J Will, Giulia Cova, Marco Osterwalder, Wing-Lee Chan, Lars Wittler, Norbert Brieske, Verena Heinrich, Jean-Pierre de Villartay, Martin Vingron, Eva Klopocki, Axel Visel, Darío G Lupiáñez, Stefan Mundlos
Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog). Nature genetics 49 (10) (2017)