Mihaela Zavolan

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 47

Top Venues

Nature communications

RNA (New York, N.Y.)

Genome biology

Nucleic acids research

University of Basel

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Basel

Switzerland

Professor :: Biozentrum

Publications

Meriç Ataman, Nitish Mittal, Lionel A Tintignac, Alexander Schmidt, Daniel J Ham, Asier González, Markus A Rüegg, Mihaela Zavolan
Calorie restriction and rapamycin distinctly mitigate aging-associated protein phosphorylation changes in mouse muscles. Communications biology 7 (1) (2024)
Niels Schlusser, Asier González, Muskan Pandey, Mihaela Zavolan
Current limitations in predicting mRNA translation with deep learning models. Genome biology 25 (1) (2024)
Maciej Bak, Erik van Nimwegen, Ian U Kouzel, Tamer Gur, Ralf Schmidt, Mihaela Zavolan, Andreas J Gruber
MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer. Nature communications 15 (1) (2024)
Arka Banerjee, Meric Ataman, Maciej Jerzy Smialek, Debdatto Mookherjee, Julius Rabl, Aleksei Mironov, Lea Mues, Ludovic Enkler, Mairene Coto-Llerena, Alexander Schmidt, Daniel Boehringer, Salvatore Piscuoglio, Anne Spang, Nitish Mittal, Mihaela Zavolan
Ribosomal protein RPL39L is an efficiency factor in the cotranslational folding of a subset of proteins with alpha helical domains. Nucleic acids research 52 (15) (2024)
Arka Banerjee, Meric Ataman, Maciej Jerzy Smialek, Debdatto Mookherjee, Julius Rabl, Aleksei Mironov, Lea Mues, Ludovic Enkler, Mairene Coto-Llerena, Alexander Schmidt, Daniel Boehringer, Salvatore Piscuoglio, Anne Spang, Nitish Mittal, Mihaela Zavolan
Ribosomal protein RPL39L is an efficiency factor in the cotranslational folding of a subset of proteins with alpha helical domains. Nucleic acids research (2024)
Arka Banerjee, Meric Ataman, Maciej Jerzy Smialek, Debdatto Mookherjee, Julius Rabl, Aleksei Mironov, Lea Mues, Ludovic Enkler, Mairene Coto-Llerena, Alexander Schmidt, Daniel Boehringer, Salvatore Piscuoglio, Anne Spang, Nitish Mittal, Mihaela Zavolan
Ribosomal protein RPL39L is an efficiency factor in the cotranslational folding of a subset of proteins with alpha helical domains. Nucleic acids research 52 (15) (2024)
Denis Seyres, Oliver Gorka, Ralf Schmidt, Romina Marone, Mihaela Zavolan, Lukas T Jeker
T helper cells exhibit a dynamic and reversible 3'UTR landscape. RNA (New York, N.Y.) (2024)
Niels Schlusser, Asier González, Muskan Pandey, Mihaela Zavolan
Current limitations in predicting mRNA translation with deep learning models. Genome biology 25 (1) (2024)
Meriç Ataman, Nitish Mittal, Lionel A Tintignac, Alexander Schmidt, Daniel J Ham, Asier González, Markus A Rüegg, Mihaela Zavolan
Calorie restriction and rapamycin distinctly mitigate aging-associated protein phosphorylation changes in mouse muscles. Communications biology 7 (1) (2024)
Niels Schlusser, Asier González, Muskan Pandey, Mihaela Zavolan
Current limitations in predicting mRNA translation with deep learning models. Genome biology 25 (1) (2024)
Maciej Bak, Erik van Nimwegen, Ian U Kouzel, Tamer Gur, Ralf Schmidt, Mihaela Zavolan, Andreas J Gruber
MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer. Nature communications 15 (1) (2024)
Maciej Bak, Erik van Nimwegen, Ian U Kouzel, Tamer Gur, Ralf Schmidt, Mihaela Zavolan, Andreas J Gruber
MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer. Nature communications 15 (1) (2024)
Nitish Mittal, Meric Ataman, Lionel A Tintignac, Daniel J Ham, Lena Jörin, Alexander Schmidt, Michael Sinnreich, Markus A Ruegg, Mihaela Zavolan
Calorie restriction and rapamycin distinctly restore non-canonical ORF translation in the muscles of aging mice. NPJ Regenerative medicine 9 (1) (2024)
Denis Seyres, Oliver Gorka, Ralf Schmidt, Romina Marone, Mihaela Zavolan, Lukas T Jeker
T helper cells exhibit a dynamic and reversible 3'-UTR landscape. RNA (New York, N.Y.) 30 (4) (2024)
Denis Seyres, Oliver Gorka, Ralf Schmidt, Romina Marone, Mihaela Zavolan, Lukas T Jeker
T helper cells exhibit a dynamic and reversible 3'-UTR landscape. RNA (New York, N.Y.) 30 (4) (2024)
Denis Seyres, Oliver Gorka, Ralf Schmidt, Romina Marone, Mihaela Zavolan, Lukas T Jeker
T helper cells exhibit a dynamic and reversible 3'-UTR landscape. RNA (New York, N.Y.) 30 (4) (2024)
Arka Banerjee, Meric Ataman, Maciej Jerzy Smialek, Debdatto Mookherjee, Julius Rabl, Aleksei Mironov, Lea Mues, Ludovic Enkler, Mairene Coto-Llerena, Alexander Schmidt, Daniel Boehringer, Salvatore Piscuoglio, Anne Spang, Nitish Mittal, Mihaela Zavolan
Ribosomal protein RPL39L is an efficiency factor in the cotranslational folding of a subset of proteins with alpha helical domains. Nucleic acids research 52 (15) (2024)
Denis Seyres, Oliver Gorka, Ralf Schmidt, Romina Marone, Mihaela Zavolan, Lukas T Jeker
T helper cells exhibit a dynamic and reversible 3'-UTR landscape. RNA (New York, N.Y.) 30 (4) (2024)
Maria Katsantoni, Erik van Nimwegen, Mihaela Zavolan
Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs. Genome biology 24 (1) (2023)
Mihaela Zavolan
Walter Keller (1938-2023): a tribute from his mentees. RNA (New York, N.Y.) (2023)
Youngbin Moon, Dominik Burri, Mihaela Zavolan
Identification of experimentally-supported poly(A) sites in single-cell RNA-seq data with SCINPAS. NAR genomics and bioinformatics 5 (3) (2023)
Sam Bryce-Smith, Dominik Burri, Matthew R Gazzara, Christina J Herrmann, Weronika Danecka, Christina M Fitzsimmons, Yuk Kei Wan, Farica Zhuang, Mervin M Fansler, José María Fernandez, Meritxell Ferret, Asier Gonzalez-Uriarte, Samuel Haynes, Chelsea Herdman, Alexander Kanitz, Maria Katsantoni, Federico Marini, Euan McDonnel, Benoit P Nicolet, Chi-Lam Poon, Gregor Rot, Leonard Schärfen, Pin-Jou Wu, Yoseop Yoon, Yoseph Barash, Mihaela Zavolan
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data. bioRxiv : the preprint server for biology (2023)
Sam Bryce-Smith, Dominik Burri, Matthew R Gazzara, Christina J Herrmann, Weronika Danecka, Christina M Fitzsimmons, Yuk Kei Wan, Farica Zhuang, Mervin M Fansler, José M Fernández, Meritxell Ferret, Asier Gonzalez-Uriarte, Samuel Haynes, Chelsea Herdman, Alexander Kanitz, Maria Katsantoni, Federico Marini, Euan McDonnel, Benoit P Nicolet, Chi-Lam Poon, Gregor Rot, Leonard Schärfen, Pin-Jou Wu, Yoseop Yoon, Yoseph Barash, Mihaela Zavolan
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data. RNA (New York, N.Y.) (2023)
Emanuele Pignatti, Emre Murat Altinkilic, Konstantin Bräutigam, Michael Groessl, Aurel Perren, Mihaela Zavolan, Christa E Flück
Cholesterol Deprivation Drives DHEA Biosynthesis in Human Adrenals. Endocrinology 163 (7) (2022)
Jeremie Breda, Arka Banerjee, Rajesh Jayachandran, Jean Pieters, Mihaela Zavolan
A novel approach to single-cell analysis reveals intrinsic differences in immune marker expression in unstimulated BALB/c and C57BL/6 macrophages. FEBS letters 596 (20) (2022)
Daniel J Ham, Anastasiya Börsch, Kathrin Chojnowska, Shuo Lin, Aurel B Leuchtmann, Alexander S Ham, Marco Thürkauf, Julien Delezie, Regula Furrer, Dominik Burri, Michael Sinnreich, Christoph Handschin, Lionel A Tintignac, Mihaela Zavolan, Nitish Mittal, Markus A Rüegg
Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle. Nature communications 13 (1) (2022)
Marco S Kaiser, Giulia Milan, Daniel J Ham, Shuo Lin, Filippo Oliveri, Kathrin Chojnowska, Lionel A Tintignac, Nitish Mittal, Christian E Zimmerli, David J Glass, Mihaela Zavolan, Markus A Rüegg
Dual roles of mTORC1-dependent activation of the ubiquitin-proteasome system in muscle proteostasis. Communications biology 5 (1) (2022)
Souvik Ghosh, Meric Ataman, Maciej Bak, Anastasiya Börsch, Alexander Schmidt, Katarzyna Buczak, Georges Martin, Beatrice Dimitriades, Christina J Herrmann, Alexander Kanitz, Mihaela Zavolan
CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis. Nucleic acids research 50 (6) (2022)
Daniel J Ham, Anastasiya Börsch, Kathrin Chojnowska, Shuo Lin, Aurel B Leuchtmann, Alexander S Ham, Marco Thürkauf, Julien Delezie, Regula Furrer, Dominik Burri, Michael Sinnreich, Christoph Handschin, Lionel A Tintignac, Mihaela Zavolan, Nitish Mittal, Markus A Rüegg
Author Correction: Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle. Nature communications 13 (1) (2022)
Jeremie Breda, Mihaela Zavolan, Erik van Nimwegen
Bayesian inference of gene expression states from single-cell RNA-seq data. Nature biotechnology 39 (8) (2021)
Antoine Cléry, Miroslav Krepl, Cristina K X Nguyen, Ahmed Moursy, Hadi Jorjani, Maria Katsantoni, Michal Okoniewski, Nitish Mittal, Mihaela Zavolan, Jiřı Šponer, Frédéric Hai-Trieu Allain
Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing. Nature communications 12 (1) (2021)
Dominik Burri, Mihaela Zavolan
Shortening of 3' UTRs in most cell types composing tumor tissues implicates alternative polyadenylation in protein metabolism. RNA (New York, N.Y.) 27 (12) (2021)
Souvik Ghosh, Anastasiya Börsch, Shreemoyee Ghosh, Mihaela Zavolan
The transcriptional landscape of a hepatoma cell line grown on scaffolds of extracellular matrix proteins. BMC genomics 22 (1) (2021)
Anastasiya Börsch, Daniel J Ham, Nitish Mittal, Lionel A Tintignac, Eugenia Migliavacca, Jérôme N Feige, Markus A Rüegg, Mihaela Zavolan
Molecular and phenotypic analysis of rodent models reveals conserved and species-specific modulators of human sarcopenia. Communications biology 4 (1) (2021)
Daniel Jutzi, Sébastien Campagne, Ralf Schmidt, Stefan Reber, Jonas Mechtersheimer, Foivos Gypas, Christoph Schweingruber, Martino Colombo, Christine von Schroetter, Fionna E Loughlin, Anny Devoy, Eva Hedlund, Mihaela Zavolan, Frédéric H-T Allain, Marc-David Ruepp
Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis. Nature communications 11 (1) (2020)
Souvik Ghosh, Joao C Guimaraes, Manuela Lanzafame, Alexander Schmidt, Afzal Pasha Syed, Beatrice Dimitriades, Anastasiya Börsch, Shreemoyee Ghosh, Nitish Mittal, Thomas Montavon, Ana Luisa Correia, Johannes Danner, Gunter Meister, Luigi M Terracciano, Sébastien Pfeffer, Salvatore Piscuoglio, Mihaela Zavolan
Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation. The EMBO journal 39 (18) (2020)
Andreas J Gruber, Mihaela Zavolan
Reply to 'A different perspective on alternative cleavage and polyadenylation'. Nature reviews. Genetics 21 (1) (2020)
Daniel J Ham, Anastasiya Börsch, Shuo Lin, Marco Thürkauf, Martin Weihrauch, Judith R Reinhard, Julien Delezie, Fabienne Battilana, Xueyong Wang, Marco S Kaiser, Maitea Guridi, Michael Sinnreich, Mark M Rich, Nitish Mittal, Lionel A Tintignac, Christoph Handschin, Mihaela Zavolan, Markus A Rüegg
The neuromuscular junction is a focal point of mTORC1 signaling in sarcopenia. Nature communications 11 (1) (2020)
Joao C Guimaraes, Nitish Mittal, Alexandra Gnann, Dominik Jedlinski, Andrea Riba, Katarzyna Buczak, Alexander Schmidt, Mihaela Zavolan
A rare codon-based translational program of cell proliferation. Genome biology 21 (1) (2020)
Andreas J Gruber, Mihaela Zavolan
Alternative cleavage and polyadenylation in health and disease. Nature reviews. Genetics 20 (10) (2019)
Alexander Kanitz, Afzal Pasha Syed, Keisuke Kaji, Mihaela Zavolan
Conserved regulation of RNA processing in somatic cell reprogramming. BMC genomics 20 (1) (2019)
Andreas J Gruber, Ralf Schmidt, Souvik Ghosh, Georges Martin, Andreas R Gruber, Erik van Nimwegen, Mihaela Zavolan
Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC. Genome biology 19 (1) (2018)
Andrzej J Rzepiela, Souvik Ghosh, Jeremie Breda, Arnau Vina-Vilaseca, Afzal P Syed, Andreas J Gruber, Katja Eschbach, Christian Beisel, Erik van Nimwegen, Mihaela Zavolan
Single-cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction. Molecular systems biology 14 (8) (2018)
Katharina Essig, Nina Kronbeck, Joao C Guimaraes, Claudia Lohs, Andreas Schlundt, Anne Hoffmann, Gesine Behrens, Sven Brenner, Joanna Kowalska, Cristina Lopez-Rodriguez, Jacek Jemielity, Helmut Holtmann, Kristin Reiche, Jörg Hackermüller, Michael Sattler, Mihaela Zavolan, Vigo Heissmeyer
Roquin targets mRNAs in a 3'-UTR-specific manner by different modes of regulation. Nature communications 9 (1) (2018)
Andreas J Gruber, Foivos Gypas, Andrea Riba, Ralf Schmidt, Mihaela Zavolan
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms. Nature methods 15 (10) (2018)
Yoana Dimitrova, Andreas J Gruber, Nitish Mittal, Souvik Ghosh, Beatrice Dimitriades, Daniel Mathow, William Aaron Grandy, Gerhard Christofori, Mihaela Zavolan
TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition. Biology direct 12 (1) (2017)
Andreas J Gruber, Ralf Schmidt, Andreas R Gruber, Georges Martin, Souvik Ghosh, Manuel Belmadani, Walter Keller, Mihaela Zavolan
A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation. Genome research 26 (8) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Mihaela Zavolan