Gerry Q Tonkin-Hill (Gerry Tonkin-Hill)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 24

Top Venues

Genome research

NAR genomics and bioinformatics

eLife

Marine biotechnology (New York, N.Y.)

University of Cambridge (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Cambridge Oct 03 2016

United Kingdom

PHD :: DAMTP

University of Melbourne Mar 01 2013 - Jul 01 2015

Australia

MSC :: Mathematics and Statistics

University of Melbourne Mar 01 2009 - Mar 01 2013

Australia

BSC :: Mathematics and Statistics

Publications

Sudaraka Mallawaarachchi, Gerry Q Tonkin-Hill, Anna K Pöntinen, Jessica K Calland, Rebecca A Gladstone, Sergio Arredondo-Alonso, Neil MacAlasdair, Harry A Thorpe, Janetta Top, Samuel K Sheppard, David Balding, Nicholas J Croucher, Jukka Corander
Detecting co-selection through excess linkage disequilibrium in bacterial genomes. NAR genomics and bioinformatics 6 (2) (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research 34 (7) (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research 34 (7) (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research (2024)
Sudaraka Mallawaarachchi, Gerry Q Tonkin-Hill, Anna K Pöntinen, Jessica K Calland, Rebecca A Gladstone, Sergio Arredondo-Alonso, Neil MacAlasdair, Harry A Thorpe, Janetta Top, Samuel K Sheppard, David Balding, Nicholas J Croucher, Jukka Corander
Detecting co-selection through excess linkage disequilibrium in bacterial genomes. NAR genomics and bioinformatics 6 (2) (2024)
Gerry Q Tonkin-Hill, Rebecca A Gladstone, Anna K Pöntinen, Sergio Arredondo-Alonso, Stephen D Bentley, Jukka Corander
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe. Genome research 33 (1) (2023)
Gerry Q Tonkin-Hill, Rebecca A Gladstone, Anna K Pöntinen, Sergio Arredondo-Alonso, Stephen D Bentley, Jukka Corander
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe. Genome research 33 (1) (2023)
Sergio Arredondo-Alonso, Rebecca A Gladstone, Anna K Pöntinen, João A Gama, Anita C Schürch, Val F Lanza, Pål Jarle Johnsen, Ørjan Samuelsen, Gerry Q Tonkin-Hill, Jukka Corander
Mge-cluster: a reference-free approach for typing bacterial plasmids. NAR genomics and bioinformatics 5 (3) (2023)
Gerry Q Tonkin-Hill, Rebecca A Gladstone, Anna K Pöntinen, Sergio Arredondo-Alonso, Stephen D Bentley, Jukka Corander
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe. Genome research 33 (1) (2023)
Gerry Q Tonkin-Hill, Rebecca A Gladstone, Anna K Pöntinen, Sergio Arredondo-Alonso, Stephen D Bentley, Jukka Corander
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe. Genome research (2023)
Gerry Q Tonkin-Hill, Rebecca A Gladstone, Anna K Pöntinen, Sergio Arredondo-Alonso, Stephen D Bentley, Jukka Corander
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe. Genome research 33 (1) (2023)
Gerry Q Tonkin-Hill, Rebecca A Gladstone, Anna K Pöntinen, Sergio Arredondo-Alonso, Stephen D Bentley, Jukka Corander
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe. Genome research 33 (1) (2023)
Samuel T Horsfield, Gerry Q Tonkin-Hill, Nicholas J Croucher, John A Lees
Accurate and fast graph-based pangenome annotation and clustering with ggCaller. Genome research (2023)
Sudaraka Mallawaarachchi, Gerry Q Tonkin-Hill, Nicholas J Croucher, Paul Turner, Doug Speed, Jukka Corander, David Joseph Balding
Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae . NAR genomics and bioinformatics 4 (1) (2022)
Gerry Q Tonkin-Hill, Clare Ling, Chrispin Chaguza, Susannah J Salter, Pattaraporn Hinfonthong, Elissavet Nikolaou, Natalie Tate, Andrzej Pastusiak, Claudia Turner, Claire Chewapreecha, Simon D W Frost, Jukka Corander, Nicholas J Croucher, Paul Turner, Stephen D Bentley
Pneumococcal within-host diversity during colonization, transmission and treatment. Nature microbiology 7 (11) (2022)
Gerry Q Tonkin-Hill, Inigo Martincorena, Roberto Amato, Andrew Rj Lawson, Moritz Gerstung, Ian Johnston, David K Jackson, Naomi Park, Stefanie V Lensing, Michael A Quail, Sónia Gonçalves, Cristina Ariani, Michael Spencer Chapman, William L Hamilton, Luke W Meredith, Grant Hall, Aminu S Jahun, Yasmin Chaudhry, Myra Hosmillo, Malte L Pinckert, Iliana Georgana, Anna Yakovleva, Laura G Caller, Sarah L Caddy, Theresa Feltwell, Fahad A Khokhar, Charlotte J Houldcroft, Martin D Curran, Surendra Parmar, null null, Alex Alderton, Rachel Nelson, Ewan M Harrison, John Sillitoe, Stephen D Bentley, Jeffrey C Barrett, Michelle S Toleman, Ian G Goodfellow, Cordelia Langford, Dominic Kwiatkowski, null null
Patterns of within-host genetic diversity in SARS-CoV-2. eLife 10 (2021)
Gerry Q Tonkin-Hill, Shazia Ruybal-Pesántez, Kathryn E Tiedje, Virginie Rougeron, Michael F Duffy, Sedigheh Zakeri, Tepanata Pumpaibool, Pongchai Harnyuttanakorn, OraLee H Branch, Lastenia Ruiz-Mesía, Thomas S Rask, Franck Prugnolle, Anthony T Papenfuss, Yao-Ban Chan, Karen Patricia Day
Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents. PLoS genetics 17 (2) (2021)
Jan Stephan Wichers-Misterek, Gerry Q Tonkin-Hill, Thorsten Thye, Ralf Krumkamp, Benno Kreuels, Jan Strauss, Heidrun von Thien, Judith Am Scholz, Helle H Hansson, Rasmus Weisel Jensen, Louise Turner, Freia-Raphaella Lorenz, Anna Schöllhorn, Iris Bruchhaus, Egbert Tannich, Rolf Fendel, Thomas Dan Otto, Thomas Lavstsen, Tim-Wolf Gilberger, Michael F Duffy, Anna Bachmann
Common virulence gene expression in adult first-time infected malaria patients and severe cases. eLife 10 (2021)
William L Hamilton, Gerry Q Tonkin-Hill, Emily R Smith, Dinesh Aggarwal, Charlotte J Houldcroft, Ben Warne, Luke W Meredith, Myra Hosmillo, Aminu S Jahun, Martin D Curran, Surendra Parmar, Laura G Caller, Sarah L Caddy, Fahad A Khokhar, Anna Yakovleva, Grant Hall, Theresa Feltwell, Malte L Pinckert, Iliana Georgana, Yasmin Chaudhry, Colin S Brown, Sonia Gonçalves, Roberto Amato, Ewan M Harrison, Nicholas M Brown, Mathew A Beale, Michael Spencer Chapman, David K Jackson, Ian Johnston, Alex Alderton, John Sillitoe, Cordelia Langford, Gordon Dougan, Sharon J Peacock, Dominic P Kwiatowski, Ian G Goodfellow, Michelle S Toleman, null null
Genomic epidemiology of COVID-19 in care homes in the east of England. eLife 10 (2021)
Gerry Q Tonkin-Hill, Neil MacAlasdair, Christopher Ruis, Aaron Weimann, Gal Horesh, John A Lees, Rebecca A Gladstone, Stephanie Lo, Christopher Beaudoin, R Andres Floto, Simon D W Frost, Jukka Corander, Stephen D Bentley, Julian Parkhill
Producing polished prokaryotic pangenomes with the Panaroo pipeline. Genome biology 21 (1) (2020)
Chrispin Chaguza, Marie Yang, Jennifer E Cornick, Mignon du Plessis, Rebecca A Gladstone, Brenda A Kwambana-Adams, Stephanie W Lo, Chinelo Ebruke, Gerry Q Tonkin-Hill, Chikondi Peno, Madikay Senghore, Stephen K Obaro, Sani Ousmane, Gerd Pluschke, Jean-Marc Collard, Betuel Sigaùque, Neil French, Keith P Klugman, Robert S Heyderman, Lesley McGee, Martin Antonio, Robert F Breiman, Anne von Gottberg, Dean B Everett, Aras Kadioglu, Stephen D Bentley
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. Communications biology 3 (1) (2020)
Michela L Mitchell, Gerry Q Tonkin-Hill, Rodrigo A V Morales, Anthony Wayne Purcell, Anthony T Papenfuss, Raymond S Norton
Tentacle Transcriptomes of the Speckled Anemone (Actiniaria: Actiniidae: Oulactis sp.): Venom-Related Components and Their Domain Structure. Marine biotechnology (New York, N.Y.) 22 (2) (2020)
John A Lees, Simon R Harris, Gerry Q Tonkin-Hill, Rebecca A Gladstone, Stephanie W Lo, Jeffrey N Weiser, Jukka Corander, Stephen D Bentley, Nicholas J Croucher
Fast and flexible bacterial genomic epidemiology with PopPUNK. Genome research 29 (2) (2019)
Gerry Q Tonkin-Hill, John A Lees, Stephen D Bentley, Simon D W Frost, Jukka Corander
RhierBAPS: An R implementation of the population clustering algorithm hierBAPS. Wellcome open research 3 (2018)

Gerry Q Tonkin-Hill.css-eqlu8i{font-size:small;padding-left:4px;} (Gerry Tonkin-Hill)

Publication Activity (10 Years)

Top Topics

Top Venues

Gerry Q Tonkin-Hill (Gerry Tonkin-Hill)