Anthony T Papenfuss (Tony Papenfuss, A T Papenfuss, Antony T Papenfuss)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 50

Top Topics

Plasmodium Falciparum

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods 21 (7) (2024)
Stefano Mangiola, M Milton, N Ranathunga, Connie Li Wai Suen, A Odainic, E Yang, W Hutchison, Alexandra L Garnham, J Iskander, Bhupinder Pal, Vijay K Yadav, Fernando J Rossello, Vincent J Carey, Martin Morgan, Sammy Bedoui, Axel Kallies, Anthony T Papenfuss
A multi-organ map of the human immune system across age, sex and ethnicity. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods (2024)
Stefano Mangiola, M Milton, N Ranathunga, Connie Li Wai Suen, A Odainic, E Yang, W Hutchison, Alexandra L Garnham, J Iskander, Bhupinder Pal, Vijay K Yadav, Fernando J Rossello, Vincent J Carey, Martin Morgan, Sammy Bedoui, Axel Kallies, Anthony T Papenfuss
A multi-organ map of the human immune system across age, sex and ethnicity. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods 21 (7) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
Richard A Sturm, Darren J Smit, David L Duffy, Catriona A Mclean, Richard A Scolyer, Grant A McArthur, Anthony T Papenfuss, Mitchell S Stark, Hans Peter Soyer, Victoria J Mar
Uncovering molecular mechanisms for amelanotic/hypopigmented primary cutaneous melanoma. The British journal of dermatology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
Stefano Mangiola, M Milton, N Ranathunga, Connie Li Wai Suen, A Odainic, E Yang, W Hutchison, Alexandra L Garnham, J Iskander, Bhupinder Pal, Vijay K Yadav, Fernando J Rossello, Vincent J Carey, Martin Morgan, Sammy Bedoui, Axel Kallies, Anthony T Papenfuss
A multi-organ map of the human immune system across age, sex and ethnicity. bioRxiv : the preprint server for biology (2024)
Yunfan Fu, Justin Bedő, Anthony T Papenfuss, Alan F Rubin
Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants. GigaScience 12 (2023)
Stefano Mangiola, Alexandra J Roth-Schulze, Marie Trussart, Enrique Zozaya-Valdés, Mengyao Ma, Zijie Gao, Alan F Rubin, Terence P Speed, Heejung Shim, Anthony T Papenfuss
sccomp: Robust differential composition and variability analysis for single-cell data. Proceedings of the National Academy of Sciences of the United States of America 120 (33) (2023)
Parminder Singh, Kishore Gollapalli, Stefano Mangiola, Daniela Schranner, Mohd Aslam Yusuf, Manish Chamoli, Sting L Shi, Bruno Lopes-Bastos, Tripti Nair, Annett Riermeier, Elena M Vayndorf, Judy Z Wu, Aishwarya Nilakhe, Christina Q Nguyen, Michael Muir, Michael G Kiflezghi, Anna Foulger, Alex Junker, Jack Devine, Kunal Sharan, Shankar J Chinta, Swati Rajput, Anand Rane, Philipp Baumert, Martin Schönfelder, Francescopaolo Iavarone, Giorgia di Lorenzo, Swati Kumari, Alka Gupta, Rajesh Sarkar, Costerwell Khyriem, Amanpreet S Chawla, Ankur Sharma, Nazan Sarper, Sanjeev K Kanojiya, Bichitra Kumar Biswal, Carmine Settembre, Nagarajan Perumal, Kimara L Targoff, Martin Picard, Sarika Gupta, Vidya Velagapudi, Anthony T Papenfuss, Alaattin Kaya, Miguel Godinho Ferreira, Brian Keith Kennedy, Julie K Andersen, Gordon J Lithgow, Abdullah Mahmood Ali, Arnab Mukhopadhyay, Aarno Palotie, Gabi Kastenmüller, Matt Kaeberlein, Henning Wackerhage, Bhupinder Pal, Vijay K Yadav
Taurine deficiency as a driver of aging. Science (New York, N.Y.) 380 (6649) (2023)
Michael F Duffy, Gerry Q Tonkin-Hill, Leily Trianty, Rintis Noviyanti, Hanh H T Nguyen, Janavi S Rambhatla, Malcolm J McConville, Stephen J Rogerson, Graham V Brown, Richard N Price, Nicholas M Anstey, Karen P Day, Anthony T Papenfuss
Relationship of circulating Plasmodium falciparum lifecycle stage to circulating parasitemia and total parasite biomass. Nature communications 13 (1) (2022)
Ruining Dong, Daniel L Cameron, Justin Bedő, Anthony T Papenfuss
svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data. GigaByte (Hong Kong, China) 2022 (2022)
Marek Cmero, Ke Yuan, Cheng Soon Ong, Jan Schröder, null null, Niall M Corcoran, Anthony T Papenfuss, Christopher M Hovens, Florian Markowetz, Geoffrey Macintyre, null null
Author Correction: Inferring structural variant cancer cell fraction. Nature communications 13 (1) (2022)
Ruining Dong, Daniel L Cameron, Justin Bedő, Anthony T Papenfuss
svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data. GigaByte (Hong Kong, China) 2022 (2022)
Daniel L Cameron, Ruining Dong, Anthony T Papenfuss
StructuralVariantAnnotation: a R/Bioconductor foundation for a caller-agnostic structural variant software ecosystem. Bioinformatics (Oxford, England) 38 (7) (2022)
Deyun Qiu, Jinxin V Pei, James E O Rosling, Vandana Thathy, Dongdi Li, Yi Xue, John D Tanner, Jocelyn Sietsma Penington, Yi Tong Vincent Aw, Jessica Yi Han Aw, Guoyue Xu, Abhai K Tripathi, Nina F Gnadig, Tomas Yeo, Kate J Fairhurst, Barbara H Stokes, James M Murithi, Krittikorn Kümpornsin, Heath Hasemer, Adelaide S M Dennis, Melanie C Ridgway, Esther K Schmitt, Judith Straimer, Anthony T Papenfuss, Marcus Chee San Lee, Ben Corry, Photini Sinnis, David A Fidock, Giel G van Dooren, Kiaran Kirk, Adele M Lehane
A G358S mutation in the Plasmodium falciparum Na + pump PfATP4 confers clinically-relevant resistance to cipargamin. Nature communications 13 (1) (2022)
Ramyar Molania, Momeneh Foroutan, Johann A Gagnon-Bartsch, Luke C Gandolfo, Aryan Jain, Abhishek Sinha, Gavriel Olshansky, Alexander Dobrovic, Anthony T Papenfuss, Terence P Speed
Removing unwanted variation from large-scale RNA sequencing data with PRPS. Nature biotechnology (2022)
Gwo-Yaw Ho, Elizabeth L Kyran, Justin Bedő, Matthew J Wakefield, Darren P Ennis, Hasan B Mirza, Cassandra J Vandenberg, Elizabeth Lieschke, Andrew Farrell, Anthony Hadla, Ratana Lim, Genevieve Dall, James E Vince, Ngee Kiat Chua, Olga Kondrashova, Rosanna Upstill-Goddard, Ulla-Maja Bailey, Suzanne Dowson, Patricia Roxburgh, Rosalind M Glasspool, Gareth Bryson, Andrew V Biankin, null null, Susanna L Cooke, Gayanie Ratnayake, Orla McNally, Nadia Traficante, null null, Anna De Fazio, John S Weroha, David D L Bowtell, Iain A McNeish, Anthony T Papenfuss, Clare L Scott, Holly E Barker
Epithelial-to-Mesenchymal Transition Supports Ovarian Carcinosarcoma Tumorigenesis and Confers Sensitivity to Microtubule Targeting with Eribulin. Cancer research 82 (23) (2022)
Ismael A Vergara, Christopher P Mintoff, Shahneen Sandhu, Lachlan McIntosh, Richard J Young, Stephen Q Wong, Andrew Colebatch, Daniel L Cameron, Julia Lai Kwon, Rory Wolfe, Angela Peng, Jason Ellul, Xuelin Dou, Clare Fedele, Samantha Boyle, Gisela Mir Arnau, Jeanette Raleigh, Athena Hatzimihalis, Pacman Szeto, Jennifer Mooi, Daniel S Widmer, Phil Fang Cheng, Valerie Amann, Reinhard Dummer, Nicholas K Hayward, James S Wilmott, Richard A Scolyer, Raymond J Cho, David Bowtell, Heather Thorne, Kathryn Alsop, Stephen Cordner, Noel Woodford, Jodie Leditschke, Patricia O'Brien, Sarah-Jane Dawson, Grant A McArthur, Graham J Mann, Mitchell P Levesque, Anthony T Papenfuss, Mark Shackleton
Evolution of late-stage metastatic melanoma is dominated by aneuploidy and whole genome doubling. Nature communications 12 (1) (2021)
Stefano Mangiola, Ramyar Molania, Ruining Dong, Maria A Doyle, Anthony T Papenfuss
tidybulk: an R tidy framework for modular transcriptomic data analysis. Genome biology 22 (1) (2021)
Stefano Mangiola, Patrick McCoy, Martin Modrak, Fernando Souza-Fonseca-Guimaraes, Daniel Blashki, Ryan Stuchbery, Simon P Keam, Michael Kerger, Ken Chow, Chayanica Nasa, Melanie Le Page, Natalie Lister, Simon Monard, Justin Peters, Phil Dundee, Scott G Williams, Anthony J Costello, Paul J Neeson, Bhupinder Pal, Nicholas D Huntington, Niall M Corcoran, Anthony T Papenfuss, Christopher M Hovens
Transcriptome sequencing and multi-plex imaging of prostate cancer microenvironment reveals a dominant role for monocytic cells in progression. BMC cancer 21 (1) (2021)
Gerry Q Tonkin-Hill, Shazia Ruybal-Pesántez, Kathryn E Tiedje, Virginie Rougeron, Michael F Duffy, Sedigheh Zakeri, Tepanata Pumpaibool, Pongchai Harnyuttanakorn, OraLee H Branch, Lastenia Ruiz-Mesía, Thomas S Rask, Franck Prugnolle, Anthony T Papenfuss, Yao-Ban Chan, Karen Patricia Day
Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents. PLoS genetics 17 (2) (2021)
Jean Berthelet, Verena C Wimmer, Holly J Whitfield, Antonin Serrano, Thomas Boudier, Stefano Mangiola, Michal Merdas, Farrah El-Saafin, David Baloyan, Jordan Wilcox, Steven Wilcox, Adam C Parslow, Anthony T Papenfuss, Belinda Yeo, Matthias Ernst, Bhupinder Pal, Robin L Anderson, Melissa J Davis, Kelly L Rogers, Frédéric Hollande, Delphine Merino
The site of breast cancer metastases dictates their clonal composition and reversible transcriptomic profile. Science advances 7 (28) (2021)
Stefano Mangiola, Evan A Thomas, Martin Modrák, Aki Vehtari, Anthony T Papenfuss
Probabilistic outlier identification for RNA sequencing generalized linear models. NAR genomics and bioinformatics 3 (1) (2021)
Lena Chng, Deborah C Holt, Matthew A Field, Joshua Reginald Francis, Dev Tillakaratne, Milou H Dekkers, Greg Robinson, Kate E Mounsey, Rebecca Pavlos, Asha C Bowen, Katja Fischer, Anthony T Papenfuss, Robin B Gasser, Pasi K Korhonen, Bart J Currie, James S McCarthy, Cielo Pasay
Molecular diagnosis of scabies using a novel probe-based polymerase chain reaction assay targeting high-copy number repetitive sequences in the Sarcoptes scabiei genome. PLoS neglected tropical diseases 15 (2) (2021)
Emily J Lelliott, Stefano Mangiola, Kelly M Ramsbottom, Magnus Zethoven, Lydia Lim, Peter Kar Han Lau, Amanda J Oliver, Luciano G Martelotto, Laura Kirby, Claire Martin, Riyaben P Patel, Alison Slater, Carleen Cullinane, Anthony T Papenfuss, Nicole M Haynes, Grant A McArthur, Jane Oliaro, Karen E Sheppard
Combined BRAF, MEK, and CDK4/6 Inhibition Depletes Intratumoral Immune-Potentiating Myeloid Populations in Melanoma. Cancer immunology research 9 (2) (2020)
Pasi K Korhonen, Robin B Gasser, Guangxu Ma, Tao Wang, Andreas J Stroehlein, Neil D Young, Ching-Seng Ang, Deepani D Fernando, Hieng C Lu, Sara Taylor, Simone L Reynolds, Ehtesham Mofiz, Shivashankar H Najaraj, Harsha Gowda, Anil Madugundu, Santosh Renuse, Deborah C Holt, Akhilesh Pandey, Anthony T Papenfuss, Katja Fischer
High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite. PLoS neglected tropical diseases 14 (10) (2020)
Michela L Mitchell, Gerry Q Tonkin-Hill, Rodrigo A V Morales, Anthony Wayne Purcell, Anthony T Papenfuss, Raymond S Norton
Tentacle Transcriptomes of the Speckled Anemone (Actiniaria: Actiniidae: Oulactis sp.): Venom-Related Components and Their Domain Structure. Marine biotechnology (New York, N.Y.) 22 (2) (2020)
Phillip J Tomezsko, Vincent D A Corbin, Paromita Gupta, Harish Swaminathan, Margalit Glasgow, Sitara Persad, Matthew D Edwards, Lachlan Mcintosh, Anthony T Papenfuss, Ann Emery, Ronald Swanstrom, Trinity Zang, Tammy C T Lan, Paul Bieniasz, Daniel R Kuritzkes, Athe Tsibris, Silvia Rouskin
Determination of RNA structural diversity and its role in HIV-1 RNA splicing. Nature 582 (7812) (2020)
Arcadi Cipponi, David L Goode, Justin Bedő, Mark J McCabe, Marina Pajic, David R Croucher, Alvaro Gonzalez Rajal, Simon R Junankar, Darren N Saunders, Pavel Lobachevsky, Anthony T Papenfuss, Danielle Nessem, Max Nobis, Sean C Warren, Paul Timpson, Mark J Cowley, Ana C Vargas, Min R Qiu, Daniele G Generali, Shivakumar Keerthikumar, Uyen Nguyen, Niall M Corcoran, Georgina V Long, Jean Yves Blay, David M Thomas
MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer. Science (New York, N.Y.) 368 (6495) (2020)
Marek Cmero, Ke Yuan, Cheng Soon Ong, Jan Schröder, null null, Niall M Corcoran, Anthony T Papenfuss, Christopher M Hovens, Florian Markowetz, Geoffrey Macintyre, null null
Inferring structural variant cancer cell fraction. Nature communications 11 (1) (2020)
Xiaomeng Zhang, Jian Zhong Tang, Ismael A Vergara, Youfang Zhang, Pacman Szeto, Lie Yang, Christopher Mintoff, Andrew Colebatch, Lachlan McIntosh, Katrina A Mitchell, Evangeline Shaw, Helen Rizos, Georgina V Long, Nicholas K Hayward, Grant A McArthur, Anthony T Papenfuss, Kieran F Harvey, Mark Shackleton
Somatic Hypermutation of the YAP Oncogene in a Human Cutaneous Melanoma. Molecular cancer research : MCR 17 (7) (2019)
Delphine Merino, Tom S Weber, A Serrano, François Vaillant, K Liu, Bhupinder Pal, Leon Di Stefano, Jaring Schreuder, Dawn S Lin, Yunshun Chen, Marie-Liesse Asselin-Labat, Ton N M Schumacher, Daniel L Cameron, Aaron T L Lun, Anthony T Papenfuss, Geoffrey J Lindeman, Jane E Visvader, Shalin H Naik
Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer. Nature communications 10 (1) (2019)
Daniel L Cameron, Leon Di Stefano, Anthony T Papenfuss
Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software. Nature communications 10 (1) (2019)
Paul R Gilson, Rasika Kumarasingha, Jennifer Thompson, Xinxin Zhang, Jocelyn Sietsma Penington, Robabeh Kalhor, Hayley E Bullen, Adele M Lehane, Madeline G Dans, Tania F de Koning-Ward, Jessica K Holien, Tatiana P Soares da Costa, Mark D Hulett, Melissa J Buskes, Brendan S Crabb, Kiaran Kirk, Anthony T Papenfuss, Alan F Cowman, Belinda M Abbott
A 4-cyano-3-methylisoquinoline inhibitor of Plasmodium falciparum growth targets the sodium efflux pump PfATP4. Scientific reports 9 (1) (2019)
Michela L Mitchell, Thomas M A Shafee, Anthony T Papenfuss, Raymond S Norton
Evolution of cnidarian trans-defensins: Sequence, structure and exploration of chemical space. Proteins 87 (7) (2019)
Delphine Merino, Tom S Weber, A Serrano, François Vaillant, K Liu, Bhupinder Pal, Leon Di Stefano, Jaring Schreuder, Dawn S Lin, Yunshun Chen, Marie-Liesse Asselin-Labat, Ton N M Schumacher, Daniel L Cameron, Aaron T L Lun, Anthony T Papenfuss, Geoffrey J Lindeman, Jane E Visvader, Shalin H Naik
Publisher Correction: Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer. Nature communications 10 (1) (2019)
Hazel Tye, Chien-Hsiung Yu, Lisa A Simms, Marcel R de Zoete, Man Lyang Kim, Martha Zakrzewski, Jocelyn Sietsma Penington, Cassandra R Harapas, Fernando Souza-Fonseca-Guimaraes, Leesa F Wockner, Adele Preaudet, Lisa A Mielke, Stephen A Wilcox, Yasunori Ogura, Sinead C Corr, Komal Kanojia, Konstantinos A Kouremenos, David P De Souza, Malcolm J McConville, Richard A Flavell, Mordechay Gerlic, Benjamin T Kile, Anthony T Papenfuss, Tracy L Putoczki, Graham L Radford-Smith, Seth L Masters
NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease. Nature communications 9 (1) (2018)
Jocelyn Sietsma Penington, Megan A S Penno, Katrina M Ngui, Nadim J Ajami, Alexandra J Roth-Schulze, Stephen A Wilcox, Esther Bandala-Sanchez, John M Wentworth, Simon C Barry, Cheryl Y Brown, Jennifer J Couper, Joseph F Petrosino, Anthony T Papenfuss, Leonard C Harrison, null null
Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis. Scientific reports 8 (1) (2018)
Ana Janic, Liz J Valente, Matthew J Wakefield, Leon Di Stefano, Liz Milla, Stephen Wilcox, Haoyu Yang, Lin Tai, Cassandra J Vandenberg, Andrew J Kueh, Shinsuke Mizutani, Margs S Brennan, Robyn L Schenk, Lisa M Lindqvist, Anthony T Papenfuss, Liam O'Connor, Andreas Strasser, Marco J Herold
DNA repair processes are critical mediators of p53-dependent tumor suppression. Nature medicine 24 (7) (2018)
Jared Mamrot, Roxane Legaie, Stacey J Ellery, Trevor Wilson, Torsten Seemann, David R Powell, David K Gardner, David W Walker, Peter Temple-Smith, Anthony T Papenfuss, Hayley Dickinson
De novo transcriptome assembly for the spiny mouse (Acomys cahirinus). Scientific reports 7 (1) (2017)
Coen M Adema, LaDeana W Hillier, Catherine S Jones, Eric S Loker, Matty Knight, Patrick Minx, Guilherme Corrêa de Oliveira, Nithya Raghavan, Andrew Shedlock, Laurence Rodrigues do Amaral, Halime D Arican-Goktas, Juliana G Assis, Elio Hideo Baba, Olga L Baron, Christopher J Bayne, Utibe Bickham-Wright, Kyle K Biggar, Michael Blouin, Bryony C Bonning, Chris Botka, Joanna M Bridger, Katherine M Buckley, Sarah K Buddenborg, Roberta Lima Caldeira, Julia Carleton, Omar S Carvalho, Maria G Castillo, Iain W Chalmers, Mikkel Christensens, Sandra Clifton, Celine Cosseau, Christine Coustau, Richard M Cripps, Yesid Cuesta-Astroz, Scott F Cummins, Leon di Stephano, Nathalie Dinguirard, David Duval, Scott Emrich, Cédric Feschotte, Rene Feyereisen, Peter FitzGerald, Catrina Fronick, Lucinda Fulton, Richard Galinier, Sandra Grossi Gava, Michael Geusz, Kathrin K Geyer, Gloria I Giraldo-Calderón, Matheus de Souza Gomes, Michelle A Gordy, Benjamin Gourbal, Christoph Grunau, Patrick C Hanington, Karl F Hoffmann, Daniel Hughes, Judith Humphries, Daniel John Jackson, Liana K Jannotti-Passos, Wander de Jesus Jeremias, Susan Jobling, Bishoy Kamel, Aurélie Kapusta, Satwant Kaur, Joris M Koene, Andrea B Kohn, Dan Lawson, Scott P Lawton, Di Liang, Yanin Limpanont, Sijun Liu, Anne E Lockyer, TyAnna L Lovato, Fernanda Ludolf, Vince Magrini, Donald P McManus, Monica Medina, Milind Misra, Guillaume Mitta, Gerald M Mkoji, Michael J Montague, Cesar Montelongo, Leonid L Moroz, Monica C Munoz-Torres, Umar Niazi, Leslie R Noble, Francislon S Oliveira, Fabiano S Pais, Anthony T Papenfuss, Rob Peace, Janeth J Pena, Emmanuel A Pila, Titouan Quelais, Brian J Raney, Jonathan P Rast, David Rollinson, Izinara C Rosse, Bronwyn Rotgans, Edwin J Routledge, Kathryn M Ryan, Larissa L S Scholte, Kenneth B Storey, Martin Swain, Jacob A Tennessen, Chad Tomlinson, Damian L Trujillo, Emanuela V Volpi, Anthony J Walker, Tianfang Wang, Ittiprasert Wannaporn, Wesley C Warren, Xiao-Jun Wu, Timothy P Yoshino, Mohammed Yusuf, Si-Ming Zhang, Min Zhao, Richard K Wilson
Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature communications 8 (2017)
Daniel L Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, Alexander Dobrovic, Terence P Speed, Anthony T Papenfuss
GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly. Genome research 27 (12) (2017)
Xavier Sisquella, Yifat Ofir-Birin, Matthew A Pimentel, Lesley Cheng, Paula Abou Karam, Natalia G Sampaio, Jocelyn Sietsma Penington, Dympna Connolly, Tal Giladi, Benjamin J Scicluna, Robyn A Sharples, Andreea Waltmann, Dror Avni, Eli Schwartz, Louis Schofield, Ziv Porat, Diana S Hansen, Anthony T Papenfuss, Emily M Eriksson, Mordechay Gerlic, Andrew F Hill, Andrew G Bowie, Neta Regev-Rudzki
Malaria parasite DNA-harbouring vesicles activate cytosolic immune sensors. Nature communications 8 (1) (2017)
Lucille C Rankin, Mathilde J H Girard-Madoux, Cyril Seillet, Lisa A Mielke, Yann Kerdiles, Aurore Fenis, Elisabeth Wieduwild, Tracy Putoczki, Stanislas Mondot, Olivier Lantz, Dieter Demon, Anthony T Papenfuss, Aaron T L Lun, Mohamed Lamkanfi, Sebastian Carotta, Jean-Christophe Renauld, Wei Shi, Sabrina Carpentier, Tim Soos, Christopher Arendt, Sophie Ugolini, Nicholas D Huntington, Gabrielle T Belz, Eric Vivier
Complementarity and redundancy of IL-22-producing innate lymphoid cells. Nature immunology 17 (2) (2015)