Charlotte J Houldcroft (Charlotte Houldcroft)

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 18

Top Topics

Herpes Simplex Virus

Pluripotent Stem Cells

Network Analysis

Top Venues

Annals of human biology

Proceedings of the National Academy of Sciences of the United States of America

Virus evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Arnold W Lambisia, Timothy O Makori, Martin Mutunga, Robinson Cheruiyot, Nickson Murunga, Joshua Quick, George Githinji, David James Nokes, Charlotte J Houldcroft, Charles N Agoti
Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013-2022). Virus evolution 9 (1) (2023)
Charlotte J Houldcroft, Simon Underdown
Infectious disease in the Pleistocene: Old friends or old foes? American journal of biological anthropology 182 (4) (2023)
Toni de-Dios, Christiana L Scheib, Charlotte J Houldcroft
An adagio for viruses, played out on ancient DNA. Genome biology and evolution (2023)
Meriam Guellil, Lucy van Dorp, Sarah A Inskip, Jenna M Dittmar, Lehti Saag, Kristiina Tambets, Ruoyun Hui, Alice K Rose, Eugenia D'Atanasio, Aivar Kriiska, Liivi Varul, A M H C Koekkelkoren, Rimma D Goldina, Craig Cessford, Anu Solnik, Mait Metspalu, Johannes Krause, Alexander Herbig, John E Robb, Charlotte J Houldcroft, Christiana Lyn Scheib
Ancient herpes simplex 1 genomes reveal recent viral structure in Eurasia. Science advances 8 (30) (2022)
Christopher J R Illingworth, William L Hamilton, Christopher Jackson, Ben Warne, Ashley Popay, Luke Meredith, Myra Hosmillo, Aminu Jahun, Tom Fieldman, Matthew Routledge, Charlotte J Houldcroft, Laura Caller, Sarah Caddy, Anna Yakovleva, Grant Hall, Fahad A Khokhar, Theresa Feltwell, Malte L Pinckert, Iliana Georgana, Yasmin Chaudhry, Martin Curran, Surendra Parmar, Dominic Sparkes, Lucy Rivett, Nick K Jones, Sushmita Sridhar, Sally Forrest, Tom Dymond, Kayleigh Grainger, Chris Workman, Effrossyni Gkrania-Klotsas, Nicholas M Brown, Michael P Weekes, Stephen Baker, Sharon J Peacock, Theodore Gouliouris, Ian Goodfellow, Daniela De Angelis, M Estée Török
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events. Molecular biology and evolution 39 (3) (2022)
Gerry Q Tonkin-Hill, Inigo Martincorena, Roberto Amato, Andrew Rj Lawson, Moritz Gerstung, Ian Johnston, David K Jackson, Naomi Park, Stefanie V Lensing, Michael A Quail, Sónia Gonçalves, Cristina Ariani, Michael Spencer Chapman, William L Hamilton, Luke W Meredith, Grant Hall, Aminu S Jahun, Yasmin Chaudhry, Myra Hosmillo, Malte L Pinckert, Iliana Georgana, Anna Yakovleva, Laura G Caller, Sarah L Caddy, Theresa Feltwell, Fahad A Khokhar, Charlotte J Houldcroft, Martin D Curran, Surendra Parmar, null null, Alex Alderton, Rachel Nelson, Ewan M Harrison, John Sillitoe, Stephen D Bentley, Jeffrey C Barrett, Michelle S Toleman, Ian G Goodfellow, Cordelia Langford, Dominic Kwiatkowski, null null
Patterns of within-host genetic diversity in SARS-CoV-2. eLife 10 (2021)
Ville Nikolai Pimenoff, Charlotte J Houldcroft
How infectious diseases arrived in the colonial Americas. eLife 10 (2021)
Cristina Venturini, Charlotte J Houldcroft, Arina Lazareva, Fanny Wegner, Sofia Morfopoulou, Persis Jal Amrolia, Zainab M Golwala, Anupama Rao, Stephen D Marks, Jacob Simmonds, Tetsushi Yoshikawa, Paul J Farrell, Jeffrey I Cohen, Austen J Worth, Judith Breuer
Epstein-Barr virus (EBV) deletions as biomarkers of response to treatment of chronic active EBV. British journal of haematology 195 (2) (2021)
William L Hamilton, Gerry Q Tonkin-Hill, Emily R Smith, Dinesh Aggarwal, Charlotte J Houldcroft, Ben Warne, Luke W Meredith, Myra Hosmillo, Aminu S Jahun, Martin D Curran, Surendra Parmar, Laura G Caller, Sarah L Caddy, Fahad A Khokhar, Anna Yakovleva, Grant Hall, Theresa Feltwell, Malte L Pinckert, Iliana Georgana, Yasmin Chaudhry, Colin S Brown, Sonia Gonçalves, Roberto Amato, Ewan M Harrison, Nicholas M Brown, Mathew A Beale, Michael Spencer Chapman, David K Jackson, Ian Johnston, Alex Alderton, John Sillitoe, Cordelia Langford, Gordon Dougan, Sharon J Peacock, Dominic P Kwiatowski, Ian G Goodfellow, Michelle S Toleman, null null
Genomic epidemiology of COVID-19 in care homes in the east of England. eLife 10 (2021)
Christopher J R Illingworth, William L Hamilton, Ben Warne, Matthew Routledge, Ashley Popay, Chris Jackson, Tom Fieldman, Luke W Meredith, Charlotte J Houldcroft, Myra Hosmillo, Aminu S Jahun, Laura G Caller, Sarah L Caddy, Anna Yakovleva, Grant Hall, Fahad A Khokhar, Theresa Feltwell, Malte L Pinckert, Iliana Georgana, Yasmin Chaudhry, Martin D Curran, Surendra Parmar, Dominic Sparkes, Lucy Rivett, Nick K Jones, Sushmita Sridhar, Sally Forrest, Tom Dymond, Kayleigh Grainger, Chris Workman, Mark Ferris, Effrossyni Gkrania-Klotsas, Nicholas M Brown, Michael P Weekes, Stephen Baker, Sharon J Peacock, Ian G Goodfellow, Theodore Gouliouris, Daniela de Angelis, Michelle S Toleman
Superspreaders drive the largest outbreaks of hospital onset COVID-19 infections. eLife 10 (2021)
Carla N Mavian, Sergei Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne-Mieke Vandamme, Simon Dellicour, Samuel V Scarpino, Charlotte J Houldcroft, Julian Villabona-Arenas, Taylor K Paisie, Nídia Sequeira Trovão, Christina Boucher, Yun Zhang, Richard H Scheuermann, Olivier Gascuel, Tommy Tsan-Yuk Lam, Marc A Suchard, Ana Abecasis, Eduan Wilkinson, Tulio de Oliveira, Ana I Bento, Heiko A Schmidt, Darren Martin, James Hadfield, Nuno Faria, Nathan D Grubaugh, Richard A Neher, Guy Baele, Philippe Lemey, Tanja Stadler, Jan Albert, Keith A Crandall, Thomas Leitner, Alexandros Stamatakis, Mattia A Prosperi, Marco Salemi
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proceedings of the National Academy of Sciences of the United States of America 117 (23) (2020)
Charlotte J Houldcroft, Juliana Cudini, Richard A Goldstein, Judith Breuer
Reply to Jensen and Kowalik: Consideration of mixed infections is central to understanding HCMV intrahost diversity. Proceedings of the National Academy of Sciences of the United States of America 117 (2) (2019)
Charlotte J Houldcroft, Riaan F Rifkin, Simon J Underdown
Human biology and ancient DNA: exploring disease, domestication and movement. Annals of human biology 46 (2) (2019)
Charlotte J Houldcroft
Human Herpesvirus Sequencing in the Genomic Era: The Growing Ranks of the Herpetic Legion. Pathogens (Basel, Switzerland) 8 (4) (2019)
Ellen Ham, Simon J Underdown, Charlotte J Houldcroft
The relative roles of maternal survival and inter-personal violence as selection pressures on the persistence of Neanderthal hypercoagulability alleles in modern Europeans. Annals of human biology 46 (2) (2019)
Ville N Pimenoff, Charlotte J Houldcroft, Riaan F Rifkin, Simon J Underdown
The Role of aDNA in Understanding the Coevolutionary Patterns of Human Sexually Transmitted Infections. Genes 9 (7) (2018)
Simon J Underdown, Krishna Kumar, Charlotte J Houldcroft
Network analysis of the hominin origin of Herpes Simplex virus 2 from fossil data. Virus evolution 3 (2) (2017)
Charlotte J Houldcroft, Jean-Baptiste Ramond, Riaan F Rifkin, Simon J Underdown
Migrating microbes: what pathogens can tell us about population movements and human evolution. Annals of human biology 44 (5) (2017)