Simon R Harris (S R Harris, Simon Harris)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2019
Publications (10 Years): 15

Top Venues

Wellcome Trust Sanger Institute

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Wellcome Trust Sanger Institute

United Kingdom

Senior Staff Scientist :: Pathogen Genomics

Publications

Leonor Sánchez-Busó, Daniel Golparian, Jukka Corander, Yonatan Hagai Grad, Makoto Ohnishi, Rebecca Flemming, Julian Parkhill, Stephen D Bentley, Magnus Unemo, Simon R Harris
The impact of antimicrobials on gonococcal evolution. Nature microbiology 4 (11) (2019)
Matthew Jenner, Xinyun Jian, Yousef Dashti, Joleen Masschelein, Christian Hobson, Douglas M Roberts, Cerith Jones, Simon R Harris, Julian Parkhill, Huzefa A Raja, Nicholas H Oberliels, Cedric J Pearce, Eshwar Mahenthiralingam, Gregory L Challis
An unusual Burkholderia gladioli double chain-initiating nonribosomal peptide synthetase assembles 'fungal' icosalide antibiotics. Chemical science 10 (21) (2019)
Sophia David, Sandra Reuter, Simon R Harris, Corinna Glasner, Theresa Feltwell, Silvia Argimon, Khalil Abudahab, Richard Goater, Tommaso Giani, Giulia Errico, Marianne Aspbury, Sara Sjunnebo, null null, null null, Edward J Feil, Gian Maria Rossolini, David M Aanensen, Hajo Grundmann
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread. Nature microbiology 4 (11) (2019)
John A Lees, Simon R Harris, Gerry Q Tonkin-Hill, Rebecca A Gladstone, Stephanie W Lo, Jeffrey N Weiser, Jukka Corander, Stephen D Bentley, Nicholas J Croucher
Fast and flexible bacterial genomic epidemiology with PopPUNK. Genome research 29 (2) (2019)
Álvaro Chiner-Oms, Leonor Sánchez-Busó, Jukka Corander, Sébastien Gagneux, Simon R Harris, D Young, Fernando Gonzáles-Candelas, Iñaki Comas
Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex. Science advances 5 (6) (2019)
Allison L Hicks, Nicole E Wheeler, Leonor Sánchez-Busó, Jennifer L Rakeman, Simon R Harris, Yonatan Hagai Grad
Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data. PLoS computational biology 15 (9) (2019)
Isaac Darko Otchere, Mireia Coscollá, Leonor Sánchez-Busó, Adwoa Asante-Poku, Daniela Brites, Chloe Loiseau, Conor Meehan, Stephen Osei-Wusu, Audrey Forson, Clement Laryea, Abdallah Iddrisu Yahayah, Akosua Baddoo, Gloria Akosua Ansa, Samuel Yaw Aboagye, Prince Asare, Sonia Borrell, Florian Gehre, Patrick Beckert, Thomas A Kohl, Sanoussi N'dira, Christian Beisel, Martin Antonio, Stefan Niemann, Bouke C de Jong, Julian Parkhill, Simon R Harris, Sebastien Gagneux, Dorothy Yeboah-Manu
Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. Scientific reports 8 (1) (2018)
John A Lees, Michelle Kendall, Julian Parkhill, Caroline Colijn, Stephen D Bentley, Simon R Harris
Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study. Wellcome open research 3 (2018)
Daniel Golparian, Valentina Donà, Leonor Sánchez-Busó, Sunniva Foerster, Simon R Harris, Andrea Endimiani, Nicola Low, Magnus Unemo
Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer. Scientific reports 8 (1) (2018)
Claire Chewapreecha, Matthew T G Holden, Minna Vehkala, Niko Välimäki, Zhirong Yang, Simon R Harris, Alison E Mather, Apichai Tuanyok, Birgit De Smet, Simon Le Hello, Chantal Bizet, Mark Mayo, Vanaporn Wuthiekanun, Direk Limmathurotsakul, Rattanaphone Phetsouvanh, Brian G Spratt, Jukka Corander, Paul Keim, Gordon Dougan, David A B Dance, Bart J Currie, Julian Parkhill, Sharon J Peacock
Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature microbiology 2 (2017)
Sophia David, Leonor Sánchez-Busó, Simon R Harris, Pekka Marttinen, Christophe Rusniok, Carmen Buchrieser, Timothy G Harrison, Julian Parkhill
Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila. PLoS genetics 13 (6) (2017)
Marcin J Skwark, Nicholas J Croucher, Santeri Puranen, Claire Chewapreecha, Maiju Pesonen, Ying Ying Xu, Paul Turner, Simon R Harris, Stephen B Beres, James M Musser, Julian Parkhill, Stephen D Bentley, Erik Aurell, Jukka Corander
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis. PLoS genetics 13 (2) (2017)
Louis Grandjean, Robert H Gilman, Tomatada Iwamoto, Claudio Umberto Köser, Jorge Coronel, Mirko Zimic, Michelle S Toleman, Diepreye Ayabina, Michelle Kendall, Christophe Fraser, Simon R Harris, Julian Parkhill, Sharon J Peacock, David A J Moore, Caroline Colijn
Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru. PloS one 12 (12) (2017)
Elizabeth J Klemm, Effrossyni Gkrania-Klotsas, James Hadfield, Jessica L Forbester, Simon R Harris, Christine Hale, Jennifer N Heath, Thomas Wileman, Simon Clare, Leanne Kane, David Goulding, Thomas D Otto, Sally Kay, Rainer Doffinger, Fiona J Cooke, Andrew Carmichael, Andrew M L Lever, Julian Parkhill, Calman A MacLennan, Dinakantha Kumararatne, Gordon Dougan, Robert A Kingsley
Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host. Nature microbiology 1 (2016)
Elisabeth Njamkepo, Nizar Fawal, Alicia Tran-Dien, Jane Hawkey, Nancy Strockbine, Claire Jenkins, Kaisar A Talukder, Raymond Bercion, Konstantin Kuleshov, Renáta Kolínská, Julie E Russell, Lidia Kaftyreva, Marie Accou-Demartin, Andreas Karas, Olivier Vandenberg, Alison E Mather, Carl J Mason, Andrew J Page, Thandavarayan Ramamurthy, Chantal Bizet, Andrzej Gamian, Isabelle Carle, Amy Gassama Sow, Christiane Bouchier, Astrid Louise Wester, Monique Lejay-Collin, Marie-Christine Fonkoua, Simon Le Hello, Martin J Blaser, Cecilia Jernberg, Corinne Ruckly, Audrey Mérens, Anne-Laure Page, Martin Aslett, Peter Roggentin, Angelika Fruth, Erick Denamur, Malabi Venkatesan, Hervé Bercovier, Ladaporn Bodhidatta, Chien-Shun Chiou, Dominique Clermont, Bianca Colonna, Svetlana Egorova, Gururaja P Pazhani, Analia V Ezernitchi, Ghislaine Guigon, Simon R Harris, Hidemasa Izumiya, Agnieszka Korzeniowska-Kowal, Anna Lutyńska, Malika Gouali, Francine Grimont, Céline Langendorf, Monika Marejková, Lorea A M Peterson, Guillermo Perez-Perez, Antoinette Ngandjio, Alexander Podkolzin, Erika Souche, Mariia Makarova, German A Shipulin, Changyun Ye, Helena Žemličková, Mária Herpay, Patrick A D Grimont, Julian Parkhill, Philippe Sansonetti, Kathryn E Holt, Sylvain Brisse, Nicholas R Thomson, François-Xavier Weill
Global phylogeography and evolutionary history of Shigella dysenteriae type 1. Nature microbiology 1 (2016)
Gavin K Paterson, Ewan M Harrison, Gemma G R Murray, John J Welch, James H Warland, Matthew T G Holden, Fiona J E Morgan, Xiaoliang Ba, Gerrit Koop, Simon R Harris, Duncan J Maskell, Sharon J Peacock, Michael E Herrtage, Julian Parkhill, Mark A Holmes
Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission. Nature communications 6 (2015)
Vanessa K Wong, Stephen Baker, Derek J Pickard, Julian Parkhill, Andrew J Page, Nicholas A Feasey, Robert A Kingsley, Nicholas R Thomson, Jacqueline A Keane, François-Xavier Weill, David J Edwards, Jane Hawkey, Simon R Harris, Alison E Mather, Amy K Cain, James Hadfield, Peter J Hart, Nga Tran Vu Thieu, Elizabeth J Klemm, Dafni A Glinos, Robert F Breiman, Conall H Watson, Samuel Kariuki, Melita A Gordon, Robert S Heyderman, Chinyere Okoro, Jan Jacobs, Octavie Lunguya, W John Edmunds, Chisomo Msefula, Jose A Chabalgoity, Mike Kama, Kylie Jenkins, Shanta Dutta, Florian Marks, Josefina Campos, Corinne Thompson, Stephen Obaro, Calman A MacLennan, Christiane Dolecek, Karen H Keddy, Anthony M Smith, Christopher M Parry, Abhilasha Karkey, E Kim Mulholland, James I Campbell, Sabina Dongol, Buddha Basnyat, Muriel Dufour, Don Bandaranayake, Take Toleafoa Naseri, Shalini Pravin Singh, Mochammad Hatta, Paul Newton, Robert S Onsare, Lupeoletalalei Isaia, David Dance, Viengmon Davong, Guy Thwaites, Lalith Wijedoru, John A Crump, Elizabeth De Pinna, Satheesh Nair, Eric J Nilles, Duy Pham Thanh, Paul Turner, Sona Soeng, Mary Valcanis, Joan Powling, Karolina Dimovski, Geoff Hogg, Jeremy Farrar, Kathryn E Holt, Gordon Dougan
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature genetics 47 (6) (2015)
Nicola Casali, Vladyslav Nikolayevskyy, Yanina Balabanova, Simon R Harris, Olga Ignatyeva, Irina Kontsevaya, Jukka Corander, Josephine Bryant, Julian Parkhill, Sergey Nejentsev, Rolf D Horstmann, Timothy Brown, Francis Drobniewski
Evolution and transmission of drug-resistant tuberculosis in a Russian population. Nature genetics 46 (3) (2014)

Simon R Harris.css-eqlu8i{font-size:small;padding-left:4px;} (S R Harris, Simon Harris)

Publication Activity (10 Years)

Top Topics

Top Venues

Simon R Harris (S R Harris, Simon Harris)