Gunnar Rätsch (Gunnar Ratsch)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Venues

Bioinformatics (Oxford, England)

Nature metabolism

Genome research

Nature methods

ETH Zürich

This page only lists publications with an associated author ORCID identifier.

Affiliation History

ETH Zürich May 01 2016

Switzerland

Professor :: Computer Science

Memorial Sloan-Kettering Cancer Center May 01 2016 - Apr 30 2019

United States

Adjunct Faculty :: Computational Biology

Weill Cornell Medical College May 01 2016 - Apr 30 2019

United States

Adjunct Faculty

Memorial Sloan Kettering Cancer Center Jan 01 2012 - Apr 30 2016

United States

Associate Professor :: Computational Biology

Max-Planck-Campus Tubingen Jan 01 2005 - Dec 31 2011

Germany

Group leader :: Friedrich Miescher Laboratory

Publications

Shkurta Gashi, Pietro Oldrati, Max Moebus, Marc Hilty, Liliana Barrios, Firat Ozdemir, null null, Veronika Kana, Andreas Lutterotti, Gunnar Rätsch, Christian Holz
Modeling multiple sclerosis using mobile and wearable sensor data. NPJ digital medicine 7 (1) (2024)
Xinrui Lyu, Bowen Fan, Matthias Hüser, Philip Hartout, Thomas Gumbsch, Martin Faltys, Tobias Michael Merz, Gunnar Rätsch, Karsten M Borgwardt
An empirical study on KDIGO-defined acute kidney injury prediction in the intensive care unit. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Xinrui Lyu, Bowen Fan, Matthias Hüser, Philip Hartout, Thomas Gumbsch, Martin Faltys, Tobias Michael Merz, Gunnar Rätsch, Karsten M Borgwardt
An empirical study on KDIGO-defined acute kidney injury prediction in the intensive care unit. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Alexander Immer, Stefan G Stark, Francis Jacob, Ximena Bonilla, Tinu Thomas, André Kahles, Sandra Goetze, Emanuela S Milani, Bernd Wollscheid, null null, Gunnar Rätsch, Kjong-van Lehmann
Probabilistic pathway-based multimodal factor analysis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Alexander Immer, Stefan G Stark, Francis Jacob, Ximena Bonilla, Tinu Thomas, André Kahles, Sandra Goetze, Emanuela S Milani, Bernd Wollscheid, null null, Gunnar Rätsch, Kjong-van Lehmann
Probabilistic pathway-based multimodal factor analysis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Maximilian Mordig, Gunnar Rätsch, André Kahles
SimReadUntil for benchmarking selective sequencing algorithms on ONT devices. Bioinformatics (Oxford, England) 40 (5) (2024)
Shkurta Gashi, Pietro Oldrati, Max Moebus, Marc Hilty, Liliana Barrios, Firat Ozdemir, null null, Veronika Kana, Andreas Lutterotti, Gunnar Rätsch, Christian Holz
Modeling multiple sclerosis using mobile and wearable sensor data. NPJ digital medicine 7 (1) (2024)
Xinrui Lyu, Bowen Fan, Matthias Hüser, Philip Hartout, Thomas Gumbsch, Martin Faltys, Tobias Michael Merz, Gunnar Rätsch, Karsten M Borgwardt
An empirical study on KDIGO-defined acute kidney injury prediction in the intensive care unit. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Alexander Immer, Stefan G Stark, Francis Jacob, Ximena Bonilla, Tinu Thomas, André Kahles, Sandra Goetze, Emanuela S Milani, Bernd Wollscheid, null null, Gunnar Rätsch, Kjong-van Lehmann
Probabilistic pathway-based multimodal factor analysis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Maximilian Mordig, Gunnar Rätsch, André Kahles
SimReadUntil for benchmarking selective sequencing algorithms on ONT devices. Bioinformatics (Oxford, England) 40 (5) (2024)
Patrick Forny, Ximena Bonilla, David Lamparter, Wenguang Shao, Tanja Plessl, Caroline Frei, Anna Bingisser, Sandra Goetze, Audrey van Drogen, Keith Harshman, Patrick G A Pedrioli, Cedric Howald, Martin Poms, Florian Traversi, Céline Bürer, Sarah Cherkaoui, Raphael J Morscher, Luke Simmons, Merima Forny, Ioannis Xenarios, Ruedi Aebersold, Nicola Zamboni, Gunnar Rätsch, Emmanouil T Dermitzakis, Bernd Wollscheid, Matthias R Baumgartner, D Sean Froese
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency. Nature metabolism 5 (1) (2023)
Patrick Forny, Ximena Bonilla, David Lamparter, Wenguang Shao, Tanja Plessl, Caroline Frei, Anna Bingisser, Sandra Goetze, Audrey van Drogen, Keith Harshman, Patrick G A Pedrioli, Cedric Howald, Martin Poms, Florian Traversi, Céline Bürer, Sarah Cherkaoui, Raphael J Morscher, Luke Simmons, Merima Forny, Ioannis Xenarios, Ruedi Aebersold, Nicola Zamboni, Gunnar Rätsch, Emmanouil T Dermitzakis, Bernd Wollscheid, Matthias R Baumgartner, D Sean Froese
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency. Nature metabolism 5 (1) (2023)
Amir Joudaki, Alexandru Meterez, Harun Mustafa, Ragnar Groot Koerkamp, André Kahles, Gunnar Rätsch
Aligning distant sequences to graphs using long seed sketches. Genome research (2023)
Patrick Forny, Ximena Bonilla, David Lamparter, Wenguang Shao, Tanja Plessl, Caroline Frei, Anna Bingisser, Sandra Goetze, Audrey van Drogen, Keith Harshman, Patrick G A Pedrioli, Cedric Howald, Martin Poms, Florian Traversi, Céline Bürer, Sarah Cherkaoui, Raphael J Morscher, Luke Simmons, Merima Forny, Ioannis Xenarios, Ruedi Aebersold, Nicola Zamboni, Gunnar Rätsch, Emmanouil T Dermitzakis, Bernd Wollscheid, Matthias R Baumgartner, D Sean Froese
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency. Nature metabolism 5 (1) (2023)
Charlotte Bunne, Stefan G Stark, Gabriele Gut, Jacobo Sarabia Del Castillo, Mitch Levesque, Kjong-van Lehmann, Lucas Pelkmans, Andreas Krause, Gunnar Rätsch
Author Correction: Learning single-cell perturbation responses using neural optimal transport. Nature methods (2023)
Patrick Forny, Ximena Bonilla, David Lamparter, Wenguang Shao, Tanja Plessl, Caroline Frei, Anna Bingisser, Sandra Goetze, Audrey van Drogen, Keith Harshman, Patrick G A Pedrioli, Cedric Howald, Martin Poms, Florian Traversi, Céline Bürer, Sarah Cherkaoui, Raphael J Morscher, Luke Simmons, Merima Forny, Ioannis Xenarios, Ruedi Aebersold, Nicola Zamboni, Gunnar Rätsch, Emmanouil T Dermitzakis, Bernd Wollscheid, Matthias R Baumgartner, D Sean Froese
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency. Nature metabolism 5 (1) (2023)
Patrick Forny, Ximena Bonilla, David Lamparter, Wenguang Shao, Tanja Plessl, Caroline Frei, Anna Bingisser, Sandra Goetze, Audrey van Drogen, Keith Harshman, Patrick G A Pedrioli, Cedric Howald, Martin Poms, Florian Traversi, Céline Bürer, Sarah Cherkaoui, Raphael J Morscher, Luke Simmons, Merima Forny, Ioannis Xenarios, Ruedi Aebersold, Nicola Zamboni, Gunnar Rätsch, Emmanouil T Dermitzakis, Bernd Wollscheid, Matthias R Baumgartner, D Sean Froese
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency. Nature metabolism 5 (1) (2023)
Charlotte Bunne, Stefan G Stark, Gabriele Gut, Jacobo Sarabia Del Castillo, Mitch Levesque, Kjong-van Lehmann, Lucas Pelkmans, Andreas Krause, Gunnar Rätsch
Learning single-cell perturbation responses using neural optimal transport. Nature methods (2023)
Mikhail Karasikov, Harun Mustafa, Gunnar Rätsch, André Kahles
Lossless indexing with counting de Bruijn graphs. Genome research (2022)
Elham Kashani, Désirée Schnidrig, Ali Hashemi Gheinani, Martina Selina Ninck, Philipp Zens, Theoni Maragkou, Ulrich Baumgartner, Philippe Schucht, Gunnar Rätsch, Mark A Rubin, Sabina Berezowska, Charlotte K Y Ng, Erik Vassella, null null
Integrated longitudinal analysis of adult grade 4 diffuse gliomas with long-term relapse interval revealed upregulation of TGF-β signaling in recurrent tumors. Neuro-oncology (2022)
Darin Salloum, Kamini Singh, Natalie R Davidson, Linlin Cao, David Kuo, Viraj R Sanghvi, Man Jiang, Maria Tello Lafoz, Agnes Viale, Gunnar Rätsch, Hans-Guido Wendel
A Rapid Translational Immune Response Program in CD8 Memory T Lymphocytes. Journal of immunology (Baltimore, Md. : 1950) 209 (6) (2022)
Kjong-van Lehmann, André Kahles, Magdalena Murr, Gunnar Rätsch
RNA Instant Quality Check: Alignment-Free RNA-Degradation Detection. Journal of computational biology : a journal of computational molecular cell biology 29 (8) (2022)
Hana Rozhoňová, Daniel Danciu, Stefan Stark, Gunnar Rätsch, André Kahles, Kjong-van Lehmann
SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing. Bioinformatics (Oxford, England) 38 (18) (2022)
Linda K Sundermann, Jeff A Wintersinger, Gunnar Rätsch, Jens Stoye, Quaid Morris
Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine. PLoS computational biology 17 (1) (2021)
Stephanie L Hyland, Martin Faltys, Matthias Hüser, Xinrui Lyu, Thomas Gumbsch, Cristóbal Esteban, Christian Bock, Max Horn, Michael Moor, Bastian Rieck, Marc Zimmermann, Dean Bodenham, Karsten M Borgwardt, Gunnar Rätsch, Tobias Michael Merz
Early prediction of circulatory failure in the intensive care unit using machine learning. Nature medicine 26 (3) (2020)
David Kuo, Jennifer Ding, Ian S Cohn, Fan Zhang, Kevin Wei, Deepak A Rao, Cristina Rozo, Upneet K Sokhi, Sara Shanaj, David J Oliver, Adriana P Echeverria, Edward F DiCarlo, Michael B Brenner, Vivian P Bykerk, Susan M Goodman, Soumya Raychaudhuri, Gunnar Rätsch, Lionel B Ivashkiv, Laura T Donlin
HBEGF+ macrophages in rheumatoid arthritis induce fibroblast invasiveness. Science translational medicine 11 (491) (2020)
Melissa S Cline, Rachel G Liao, Michael T Parsons, Benedict Paten, Faisal S Alquaddoomi, Antonis Antoniou, Samantha Baxter, Larry Brody, Robert Cook-Deegan, Amy Coffin, Fergus J Couch, Brian Craft, Robert Currie, Chloe C Dlott, Lena Dolman, Johan T den Dunnen, Stephanie O M Dyke, Susan M Domchek, Douglas Easton, Zachary Fischmann, William D Foulkes, Judy Garber, David Goldgar, Mary J Goldman, Peter Goodhand, Steven M Harrison, David Haussler, Kazuto Kato, Bartha Knoppers, Charles Markello, Robert Nussbaum, Kenneth Offit, Sharon E Plon, Jem Rashbass, Michael J Bamshad, Mark Robson, Wendy S Rubinstein, Dominique Stoppa-Lyonnet, Sean V Tavtigian, Adrian Thorogood, Can Zhang, Marc Zimmermann, null null, John Burn, Stephen J Chanock, Gunnar Rätsch, Amanda B Spurdle
BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2. PLoS genetics 14 (12) (2018)
Martha Imprialou, André Kahles, Joshua G Steffen, Edward J Osborne, Xiangchao Gan, Janne Lempe, Amarjit Bhomra, Eric Belfield, Anne Visscher, Robert Greenhalgh, Nicholas P Harberd, Richard Goram, Jotun Hein, Alexandre Robert-Seilaniantz, Jonathan D G Jones, Oliver Stegle, Paula Kover, Miltos Tsiantis, Magnus Nordborg, Gunnar Rätsch, Richard M Clark, Richard F Mott
Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics 205 (4) (2017)

Gunnar Rätsch.css-eqlu8i{font-size:small;padding-left:4px;} (Gunnar Ratsch)

Publication Activity (10 Years)

Top Topics

Top Venues

Gunnar Rätsch (Gunnar Ratsch)