Ali Hashemi Gheinani

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 28

Top Venues

GigaScience

bioRxiv : the preprint server for biology

International journal of molecular sciences

American journal of physiology. Renal physiology

Harvard Medical School

Universität Bern (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Harvard Medical School Dec 10 2018

United States

Postdoctoral Fellow :: Surgery

Children's Hospital Boston Dec 10 2018

United States

Research Fellow :: Urology

Universität Bern Aug 18 2015 - Dec 09 2018

Switzerland

Postdoctoral Fellow :: Medical Faculty - Department of Clinical Research

Education History

Universität Bern Nov 01 2011 - Aug 17 2015

Switzerland

PHD :: Medical Faculty, Department of Clinical Research

Publications

Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences 25 (3) (2024)
Akshay Akshay, Mitali Katoch, Navid Shekarchizadeh, Masoud Abedi, Ankush Sharma, Fiona C Burkhard, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning-driven data analysis. GigaScience 13 (2024)
Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-based Classification of transcriptome Signatures of non-ulcerative Bladder Pain Syndrome. bioRxiv : the preprint server for biology (2024)
Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences 25 (3) (2024)
Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-based Classification of transcriptome Signatures of non-ulcerative Bladder Pain Syndrome. bioRxiv : the preprint server for biology (2024)
Akshay Akshay, Mitali Katoch, Navid Shekarchizadeh, Masoud Abedi, Ankush Sharma, Fiona C Burkhard, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning-driven data analysis. GigaScience 13 (2024)
Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences 25 (3) (2024)
Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-based Classification of transcriptome Signatures of non-ulcerative Bladder Pain Syndrome. bioRxiv : the preprint server for biology (2024)
Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences 25 (3) (2024)
Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences 25 (3) (2024)
Akshay Akshay, Mitali Katoch, Navid Shekarchizadeh, Masoud Abedi, Ankush Sharma, Fiona C Burkhard, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning-driven data analysis. GigaScience 13 (2024)
Akshay Akshay, Mitali Katoch, Navid Shekarchizadeh, Masoud Abedi, Ankush Sharma, Fiona C Burkhard, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning-driven data analysis. GigaScience 13 (2024)
Akshay Akshay, Mustafa Besic, Annette Kuhn, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences 25 (3) (2024)
Ali Hashemi Gheinani, Jina Kim, Sungyong You, Rosalyn M Adam
Bioinformatics in urology - molecular characterization of pathophysiology and response to treatment. Nature reviews. Urology (2023)
Akshay Akshay, Mitali Katoch, Navid Shekarchizadeh, Masoud Abedi, Ankush Sharma, Fiona C Burkhard, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis. bioRxiv : the preprint server for biology (2023)
Akshay Akshay, Masoud Abedi, Navid Shekarchizadeh, Fiona C Burkhard, Mitali Katoch, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
MLcps: machine learning cumulative performance score for classification problems. GigaScience 12 (2023)
Akshay Akshay, Mitali Katoch, Masoud Abedi, Mustafa Besic, Navid Shekarchizadeh, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis. bioRxiv : the preprint server for biology (2023)
Akshay Akshay, Masoud Abedi, Navid Shekarchizadeh, Fiona C Burkhard, Mitali Katoch, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
MLcps: machine learning cumulative performance score for classification problems. GigaScience 12 (2023)
Ali Hashemi Gheinani, Bryan S Sack, Alex Bigger-Allen, Hatim Thaker, Hussein Atta, George Lambrinos, Kyle Costa, Claire Doyle, Mehrnaz Gharaee-Kermani, Susan Patalano, Mary Piper, Justin F Cotellessa, Dijana Vitko, Haiying Li, Manubhai Kadayil Prabhakaran, Vivian Cristofaro, John Froehlich, Richard S Lee, Wei Yang, Maryrose P Sullivan, Jill A Macoska, Rosalyn M Adam
Integrated omics analysis unveils a DNA damage response to neurogenic injury. bioRxiv : the preprint server for biology (2023)
Akshay Akshay, Masoud Abedi, Navid Shekarchizadeh, Fiona C Burkhard, Mitali Katoch, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
MLcps: machine learning cumulative performance score for classification problems. GigaScience 12 (2023)
Akshay Akshay, Mitali Katoch, Masoud Abedi, Navid Shekarchizadeh, Mustafa Besic, Fiona C Burkhard, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
SpheroScan: a user-friendly deep learning tool for spheroid image analysis. GigaScience 12 (2023)
Ali Hashemi Gheinani, Bryan S Sack, Alex Bigger-Allen, Hatim Thaker, Hussein Atta, George Lambrinos, Kyle Costa, Claire Doyle, Mehrnaz Gharaee-Kermani, Susan Patalano, Mary Piper, Justin F Cotellessa, Dijana Vitko, Haiying Li, Manubhai Kadayil Prabhakaran, Vivian Cristofaro, John Froehlich, Richard S Lee, Wei Yang, Maryrose P Sullivan, Jill A Macoska, Rosalyn M Adam
Integrated omics analysis unveils a DNA damage response to neurogenic injury. bioRxiv : the preprint server for biology (2023)
Alexander Bigger-Allen, Ali Hashemi Gheinani, Rosalyn M Adam
Investigation of the impact of bromodomain inhibition on cytoskeleton stability and contraction. bioRxiv : the preprint server for biology (2023)
Akshay Akshay, Masoud Abedi, Navid Shekarchizadeh, Fiona C Burkhard, Mitali Katoch, Alex Bigger-Allen, Rosalyn M Adam, Katia Monastyrskaya, Ali Hashemi Gheinani
MLcps: machine learning cumulative performance score for classification problems. GigaScience 12 (2023)
Ali Hashemi Gheinani, Bryan S Sack, Alex Bigger-Allen, Hatim Thaker, Hussein Atta, George Lambrinos, Kyle Costa, Claire Doyle, Mehrnaz Gharaee-Kermani, Susan Patalano, Mary Piper, Justin F Cotellessa, Dijana Vitko, Haiying Li, Manubhai Kadayil Prabhakaran, Vivian Cristofaro, John Froehlich, Richard S Lee, Wei Yang, Maryrose P Sullivan, Jill A Macoska, Rosalyn M Adam
Integrated omics analysis unveils a DNA damage response to neurogenic injury. bioRxiv : the preprint server for biology (2023)
Elham Kashani, Désirée Schnidrig, Ali Hashemi Gheinani, Martina Selina Ninck, Philipp Zens, Theoni Maragkou, Ulrich Baumgartner, Philippe Schucht, Gunnar Rätsch, Mark A Rubin, Sabina Berezowska, Charlotte K Y Ng, Erik Vassella, null null
Integrated longitudinal analysis of adult grade 4 diffuse gliomas with long-term relapse interval revealed upregulation of TGF-β signaling in recurrent tumors. Neuro-oncology (2022)
Zahra Alvandi, Yasufumi Nagata, Livia Silva Araúujo Passos, Ali Hashemi Gheinani, J Luis Guerrero, Jill Wylie-Sears, Dayana Carolina Romero, Brittan A Morris, Suzanne M Sullivan, Koushiar M Yaghoubian, Amirhossein Alvandi, Rosalyn M Adam, Elena Aikawa, Robert A Levine, Joyce Bischoff
Wnt Site Signaling Inhibitor Secreted Frizzled-Related Protein 3 Protects Mitral Valve Endothelium From Myocardial Infarction-Induced Endothelial-to-Mesenchymal Transition. Journal of the American Heart Association 11 (7) (2022)
Ali Hashemi Gheinani, Alexander Bigger-Allen, Amanda Wacker, Rosalyn M Adam
Systems analysis of benign bladder disorders: insights from omics analysis. American journal of physiology. Renal physiology 318 (4) (2020)

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Publication Activity (10 Years)

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Ali Hashemi Gheinani