Hong-Wen Deng (Hongwen Deng)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 53

Top Venues

NPJ precision oncology

GigaScience

NAR genomics and bioinformatics

Biology

Tulane University

University of Oregon (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Tulane University

United States

Adjunct Professor :: Orthopedic Surgery, Biochemistry, Medicine, and Cell and Molecular Biology

Tulane University School of Public Health and Tropical Medicine

United States

Edward G. Schlieder Endowed Chair, Professor :: Dept. of Biostatistics and Data Science

Tulane University School of Public Health and Tropical Medicine

United States

Founding Director :: Tulane Center for Bioinformatics and Genomics

Tulane University School of Public Health and Tropical Medicine

United States

Chair :: Dept. Biostatistics and Data Science

University of Missouri Kansas City

United States

Director, Human Genetics/Genomics Program :: School of Medicine

University of Missouri Kansas City

United States

Professor, Franklin D. Dickson/Missouri Endowed Chair :: School of Medicine

University of Missouri Kansas City

United States

Director, Orthopedic Research :: Department of Orthopedic Surgery, School of Medicine

Creighton University

United States

Professor, Director :: Genetics Lab, Osteoporosis Research Center

Creighton University

United States

Associate Professor, Director :: Genetics Lab, Osteoporosis Research Center

Creighton University

United States

Assistant Professor, Director :: Genetics Lab, Osteoporosis Research Center

University of Texas Health Science Center at Houston

United States

Postdoc. Fellow :: Human Genetics Center

University of Oregon Institute of Molecular Biology

United States

Hughes Fellow

University of Oregon

United States

Research Associate :: Computer and Information Science

University of Oregon

United States

Research and Teaching Assistant :: Biology

Peking University

China

Research Assistant :: Biology

Education History

University of Oregon

United States

MSC :: Statistics

University of Oregon

United States

PHD :: Quantitative Genetics

Peking University

China

MSC :: biology

Peking University

China

BSC :: Biology

Publications

Martin C Nwadiugwu, Ikenna Onwuekwe, Echezona Ezeanolue, Hong-Wen Deng
Beyond Amyloid: A Machine Learning-Driven Approach Reveals Properties of Potent GSK-3β Inhibitors Targeting Neurofibrillary Tangles. International journal of molecular sciences 25 (5) (2024)
Weiqiang Lin, Jiadong Ji, Kuan-Jui Su, Chuan Qiu, Qing Tian, Lan-Juan Zhao, Zhe Luo, Chong Wu, Hui Shen, Hong-Wen Deng
omicsMIC: a comprehensive benchmarking platform for robust comparison of imputation methods in mass spectrometry-based omics data. NAR genomics and bioinformatics 6 (2) (2024)
Jingjing Zhu, Ke Wu, Shuai Liu, Alexandra Masca, Hua Zhong, Tai Yang, Dalia H Ghoneim, Praveen Surendran, Tanxin Liu, Qizhi Yao, Tao Liu, Sarah Fahle, Adam Butterworth, Md Ashad Alam, Jaydutt V Vadgama, Youping Deng, Hong-Wen Deng, Chong Wu, Yong Wu, Lang Wu
Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma. GigaScience 13 (2024)
Lindong Jiang, Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu-Ping Wang, Hong-Wen Deng
Autosurv: interpretable deep learning framework for cancer survival analysis incorporating clinical and multi-omics data. NPJ precision oncology 8 (1) (2024)
Lindong Jiang, Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu-Ping Wang, Hong-Wen Deng
Autosurv: interpretable deep learning framework for cancer survival analysis incorporating clinical and multi-omics data. NPJ precision oncology 8 (1) (2024)
Martin C Nwadiugwu, Ikenna Onwuekwe, Echezona Ezeanolue, Hong-Wen Deng
Beyond Amyloid: A Machine Learning-Driven Approach Reveals Properties of Potent GSK-3β Inhibitors Targeting Neurofibrillary Tangles. International journal of molecular sciences 25 (5) (2024)
Yong Liu, Xiang-He Meng, Chong Wu, Kuan-Jui Su, Anqi Liu, Qing Tian, Lan-Juan Zhao, Chuan Qiu, Zhe Luo, Martha I Gonzalez-Ramirez, Hui Shen, Hong-Mei Xiao, Hong-Wen Deng
Variability in performance of genetic-enhanced DXA-BMD prediction models across diverse ethnic and geographic populations: A risk prediction study. PLoS medicine 21 (8) (2024)
Lindong Jiang, Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu-Ping Wang, Hong-Wen Deng
Autosurv: interpretable deep learning framework for cancer survival analysis incorporating clinical and multi-omics data. NPJ precision oncology 8 (1) (2024)
Martin C Nwadiugwu, Ikenna Onwuekwe, Echezona Ezeanolue, Hong-Wen Deng
Beyond Amyloid: A Machine Learning-Driven Approach Reveals Properties of Potent GSK-3β Inhibitors Targeting Neurofibrillary Tangles. International journal of molecular sciences 25 (5) (2024)
Jingjing Zhu, Ke Wu, Shuai Liu, Alexandra Masca, Hua Zhong, Tai Yang, Dalia H Ghoneim, Praveen Surendran, Tanxin Liu, Qizhi Yao, Tao Liu, Sarah Fahle, Adam Butterworth, Md Ashad Alam, Jaydutt V Vadgama, Youping Deng, Hong-Wen Deng, Chong Wu, Yong Wu, Lang Wu
Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma. GigaScience 13 (2024)
Jingjing Zhu, Ke Wu, Shuai Liu, Alexandra Masca, Hua Zhong, Tai Yang, Dalia H Ghoneim, Praveen Surendran, Tanxin Liu, Qizhi Yao, Tao Liu, Sarah Fahle, Adam Butterworth, Md Ashad Alam, Jaydutt V Vadgama, Youping Deng, Hong-Wen Deng, Chong Wu, Yong Wu, Lang Wu
Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma. GigaScience 13 (2024)
Jingjing Zhu, Ke Wu, Shuai Liu, Alexandra Masca, Hua Zhong, Tai Yang, Dalia H Ghoneim, Praveen Surendran, Tanxin Liu, Qizhi Yao, Tao Liu, Sarah Fahle, Adam Butterworth, Md Ashad Alam, Jaydutt V Vadgama, Youping Deng, Hong-Wen Deng, Chong Wu, Yong Wu, Lang Wu
Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma. GigaScience 13 (2024)
Martin C Nwadiugwu, Ikenna Onwuekwe, Echezona Ezeanolue, Hong-Wen Deng
Beyond Amyloid: A Machine Learning-Driven Approach Reveals Properties of Potent GSK-3β Inhibitors Targeting Neurofibrillary Tangles. International journal of molecular sciences 25 (5) (2024)
Jingjing Zhu, Ke Wu, Shuai Liu, Alexandra Masca, Hua Zhong, Tai Yang, Dalia H Ghoneim, Praveen Surendran, Tanxin Liu, Qizhi Yao, Tao Liu, Sarah Fahle, Adam Butterworth, Md Ashad Alam, Jaydutt V Vadgama, Youping Deng, Hong-Wen Deng, Chong Wu, Yong Wu, Lang Wu
Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma. GigaScience 13 (2024)
Lindong Jiang, Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu-Ping Wang, Hong-Wen Deng
Autosurv: interpretable deep learning framework for cancer survival analysis incorporating clinical and multi-omics data. NPJ precision oncology 8 (1) (2024)
Weiqiang Lin, Jiadong Ji, Kuan-Jui Su, Chuan Qiu, Qing Tian, Lan-Juan Zhao, Zhe Luo, Chong Wu, Hui Shen, Hong-Wen Deng
omicsMIC: a comprehensive benchmarking platform for robust comparison of imputation methods in mass spectrometry-based omics data. NAR genomics and bioinformatics 6 (2) (2024)
Lindong Jiang, Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu-Ping Wang, Hong-Wen Deng
Autosurv: interpretable deep learning framework for cancer survival analysis incorporating clinical and multi-omics data. NPJ precision oncology 8 (1) (2024)
Lindong Jiang, Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu-Ping Wang, Hong-Wen Deng
Autosurv: interpretable deep learning framework for cancer survival analysis incorporating clinical and multi-omics data. NPJ precision oncology 8 (1) (2024)
Weiqiang Lin, Jiadong Ji, Kuan-Jui Su, Chuan Qiu, Qing Tian, Lan-Juan Zhao, Zhe Luo, Chong Wu, Hui Shen, Hong-Wen Deng
omicsMIC: a comprehensive benchmarking platform for robust comparison of imputation methods in mass spectrometry-based omics data. NAR genomics and bioinformatics 6 (2) (2024)
Weiqiang Lin, Jiadong Ji, Kuan-Jui Su, Chuan Qiu, Qing Tian, Lan-Juan Zhao, Zhe Luo, Chong Wu, Hui Shen, Hong-Wen Deng
omicsMIC: a comprehensive benchmarking platform for robust comparison of imputation methods in mass spectrometry-based omics data. NAR genomics and bioinformatics 6 (2) (2024)
Lindong Jiang, Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu-Ping Wang, Hong-Wen Deng
Autosurv: interpretable deep learning framework for cancer survival analysis incorporating clinical and multi-omics data. NPJ precision oncology 8 (1) (2024)
Martin Nwadiugwu, Hui Shen, Hong-Wen Deng
Potential Molecular Mechanisms of Alzheimer's Disease from Genetic Studies. Biology 12 (4) (2023)
Hunter J Melton, Zichen Zhang, Hong-Wen Deng, Lang Wu, Chong Wu
MIMOSA: A resource consisting of improved methylome imputation models increases power to identify DNA methylation-phenotype associations. medRxiv : the preprint server for health sciences (2023)
Weihua Zhou, Chen Zhao, Anqi Liu, Xiao Zhang, Xuewei Cao, Zhengming Ding, Qiuying Sha, Hui Shen, Hong-Wen Deng
CLCLSA: Cross-omics Linked embedding with Contrastive Learning and Self Attention for multi-omics integration with incomplete multi-omics data. Research square (2023)
Rui Gong, Jonathan Greenbaum, Xu Lin, Yan Du, Kuan-Jui Su, Yun Gong, Jie Shen, Hong-Wen Deng
Identification of potential genetic causal variants for obesity-related traits using statistical fine mapping. Molecular genetics and genomics : MGG (2023)
Lindong Jiang, Chao Xu, Yuntong Bai, Anqi Liu, Yun Gong, Yu-Ping Wang, Hong-Wen Deng
AUTOSurv: Interpretable Deep Learning Framework for Cancer Survival Analysis Incorporating Clinical and Multi-omics Data. Research square (2023)
Shuang Liang, Danyang Liu, Zhengwu Xiao, Jonathan Greenbaum, Hui Shen, Hongmei Xiao, Hong-Wen Deng
Repurposing Approved Drugs for Sarcopenia Based on Transcriptomics Data in Humans. Pharmaceuticals (Basel, Switzerland) 16 (4) (2023)
Xu Lin, Hong-Mei Xiao, Hui-Min Liu, Wan-Qiang Lv, Jonathan Greenbaum, Rui Gong, Qiang Zhang, Yuan-Cheng Chen, Cheng Peng, Xue-Juan Xu, Dao-Yan Pan, Zhi Chen, Zhang-Fang Li, Rou Zhou, Xia-Fang Wang, Jun-Min Lu, Zeng-Xin Ao, Yu-Qian Song, Yin-Hua Zhang, Kuan-Jui Su, Xiang-He Meng, Chang-Li Ge, Feng-Ye Lv, Zhe Luo, Xing Ming Shi, Qi Zhao, Bo-Yi Guo, Neng-Jun Yi, Hui Shen, Christopher J Papasian, Jie Shen, Hong-Wen Deng
Gut microbiota impacts bone via Bacteroides vulgatus-valeric acid-related pathways. Nature communications 14 (1) (2023)
Shuang Liang, Danyang Liu, Zhengwu Xiao, Jonathan Greenbaum, Hui Shen, Hongmei Xiao, Hong-Wen Deng
Repurposing Approved Drugs for Sarcopenia Based on Transcriptomics Data in Humans. Pharmaceuticals (Basel, Switzerland) 16 (4) (2023)
Weihua Zhou, Chen Zhao, Anqi Liu, Xiao Zhang, Xuewei Cao, Zhengming Ding, Qiuying Sha, Hui Shen, Hong-Wen Deng
CLCLSA: Cross-omics Linked embedding with Contrastive Learning and Self Attention for multi-omics integration with incomplete multi-omics data. Research square (2023)
Shuang Liang, Danyang Liu, Zhengwu Xiao, Jonathan Greenbaum, Hui Shen, Hongmei Xiao, Hong-Wen Deng
Repurposing Approved Drugs for Sarcopenia Based on Transcriptomics Data in Humans. Pharmaceuticals (Basel, Switzerland) 16 (4) (2023)
Martin Nwadiugwu, Hui Shen, Hong-Wen Deng
Potential Molecular Mechanisms of Alzheimer's Disease from Genetic Studies. Biology 12 (4) (2023)
Martin Nwadiugwu, Hui Shen, Hong-Wen Deng
Potential Molecular Mechanisms of Alzheimer's Disease from Genetic Studies. Biology 12 (4) (2023)
Shuang Liang, Danyang Liu, Zhengwu Xiao, Jonathan Greenbaum, Hui Shen, Hongmei Xiao, Hong-Wen Deng
Repurposing Approved Drugs for Sarcopenia Based on Transcriptomics Data in Humans. Pharmaceuticals (Basel, Switzerland) 16 (4) (2023)
Lei Huang, Meng Song, Hui Shen, Huixiao Hong, Ping Gong, Hong-Wen Deng, Chaoyang Zhang
Deep Learning Methods for Omics Data Imputation. Biology 12 (10) (2023)
Wen-Di Shen, Xu Lin, Hui-Min Liu, Bo-Yang Li, Xiang Qiu, Wan-Qiang Lv, Xue-Zhen Zhu, Jonathan Greenbaum, Rui-Ke Liu, Jie Shen, Hong-Mei Xiao, Hong-Wen Deng
Gut microbiota accelerates obesity in peri-/post-menopausal women via Bacteroides fragilis and acetic acid. International journal of obesity (2005) 46 (10) (2022)
Chen Zhao, Haipeng Tang, Daniel McGonigle, Zhuo He, Chaoyang Zhang, Yu-Ping Wang, Hong-Wen Deng, Robert Bober, Weihua Zhou
Development of an approach to extracting coronary arteries and detecting stenosis in invasive coronary angiograms. Journal of medical imaging (Bellingham, Wash.) 9 (4) (2022)
Hang Zhou, Rasmon Kalayasiri, Yan Sun, Yaira Z Nuñez, Hong-Wen Deng, Xiang-Ding Chen, Amy C Justice, Henry R Kranzler, Su-Hua Chang, Lin Lu, Jie Shi, Kittipong Sanichwankul, Apiwat Mutirangura, Robert T Malison, Joshua C Gray
Genome-wide meta-analysis of alcohol use disorder in East Asians. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 47 (10) (2022)
Gang Yu, Kai Sun, Chao Xu, Xing-Hua Shi, Chong Wu, Ting Xie, Run-Qi Meng, Xiang-He Meng, Kuan-Song Wang, Hong-Mei Xiao, Hong-Wen Deng
Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images. Nature communications 12 (1) (2021)
Xiao Zhang, Hong-Wen Deng, Hui Shen, Melanie Ehrlich
Prioritization of Osteoporosis-Associated Genome-wide Association Study (GWAS) Single-Nucleotide Polymorphisms (SNPs) Using Epigenomics and Transcriptomics. JBMR plus 5 (5) (2021)
Rui Gong, Hong-Mei Xiao, Yin-Hua Zhang, Qi Zhao, Kuan-Jui Su, Xu Lin, Cheng-Lin Mo, Qiang Zhang, Ya-Ting Du, Feng-Ye Lyu, Yuan-Cheng Chen, Cheng Peng, Hui-Min Liu, Shi-Di Hu, Dao-Yan Pan, Zhi Chen, Zhang-Fang Li, Rou Zhou, Xia-Fang Wang, Jun-Min Lu, Zeng-Xin Ao, Yu-Qian Song, Chan-Yan Weng, Qing Tian, Martin R Schiller, Christopher J Papasian, Marco Brotto, Hui Shen, Jie Shen, Hong-Wen Deng
Identification and Functional Characterization of Metabolites for Bone Mass in Peri- and Postmenopausal Chinese Women. The Journal of clinical endocrinology and metabolism 106 (8) (2021)
Yong Zeng, Hao He, Lan Zhang, Wei Zhu, Hui Shen, Yu-Jie Yan, Hong-Wen Deng
GWA-based pleiotropic analysis identified potential SNPs and genes related to type 2 diabetes and obesity. Journal of human genetics 66 (3) (2020)
Zhiying Wang, Liangqiao Bian, Chenglin Mo, Hui Shen, Lan-Juan Zhao, Kuan-Jui Su, Maciej Kukula, Jauh Tzuoh Lee, Daniel W Armstrong, Robert Recker, Joan Lappe, Lynda F Bonewald, Hong-Wen Deng, Marco Brotto
Quantification of aminobutyric acids and their clinical applications as biomarkers for osteoporosis. Communications biology 3 (1) (2020)
Gui-Juan Feng, Xin-Tong Wei, Hong Zhang, Xiao-Lin Yang, Hui Shen, Qing Tian, Hong-Wen Deng, Yu-Fang Pei, Yu-Fang Pei
Identification of pleiotropic loci underlying hip bone mineral density and trunk lean mass. Journal of human genetics 66 (3) (2020)
Zun Wang, Jonathan Greenbaum, Chuan Qiu, Kelvin Li, Qian Wang, Si-Yuan Tang, Hong-Wen Deng
Identification of pleiotropic genes between risk factors of stroke by multivariate metaCCA analysis. Molecular genetics and genomics : MGG 295 (5) (2020)
Xin-Tong Wei, Gui-Juan Feng, Hong Zhang, Qian Xu, Jing-Jing Ni, Min Zhao, Xiao-Lin Yang, Qing Tian, Hui Shen, Rong Hai, Hong-Wen Deng, Yu-Fang Pei, Yu-Fang Pei
Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis. European journal of human genetics : EJHG 29 (4) (2020)
Yu Liu, Shu Ran, Yong Lin, Yu-Xue Zhang, Xiao-Lin Yang, Xin-Tong Wei, Zi-Xuan Jiang, Xiao He, Hong Zhang, Gui-Juan Feng, Hui Shen, Qing Tian, Hong-Wen Deng, Yu-Fang Pei, Yu-Fang Pei
Four pleiotropic loci associated with fat mass and lean mass. International journal of obesity (2005) 44 (10) (2020)
Shu Ran, Yu-Xue Zhang, Lu Liu, Zi-Xuan Jiang, Xiao He, Yu Liu, Hui Shen, Qing Tian, Yu-Fang Pei, Hong-Wen Deng, Lei Zhang
Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study. Scientific reports 10 (1) (2020)
Chao Xu, Ruiyuan Zhang, Hui Shen, Hong-Wen Deng
Medium-coverage DNA sequencing in the design of the genetic association study. European journal of human genetics : EJHG 28 (10) (2020)
Tie-Lin Yang, Hui Shen, Anqi Liu, Shan-Shan Dong, Lei Zhang, Fei-Yan Deng, Qi Zhao, Hong-Wen Deng
A road map for understanding molecular and genetic determinants of osteoporosis. Nature reviews. Endocrinology 16 (2) (2019)
Yuan-Cheng Chen, Chao Xu, Ji-Gang Zhang, Chun-Ping Zeng, Xia-Fang Wang, Rou Zhou, Xu Lin, Zeng-Xin Ao, Jun-Min Lu, Jie Shen, Hong-Wen Deng
Multivariate analysis of genomics data to identify potential pleiotropic genes for type 2 diabetes, obesity and dyslipidemia using Meta-CCA and gene-based approach. PloS one 13 (8) (2018)
Chao Xu, Ji-Gang Zhang, Dongdong Lin, Lan Zhang, Hui Shen, Hong-Wen Deng
A Systemic Analysis of Transcriptomic and Epigenomic Data To Reveal Regulation Patterns for Complex Disease. G3 (Bethesda, Md.) 7 (7) (2017)
Rou Zhou, Xu Lin, Ding-You Li, Xia-Fang Wang, Jonathan Greenbaum, Yuan-Cheng Chen, Chun-Ping Zeng, Jun-Min Lu, Zeng-Xing Ao, Lin-Ping Peng, Xiao Chun Bai, Jie Shen, Hong-Wen Deng
Identification of novel genetic loci for osteoporosis and/or rheumatoid arthritis using cFDR approach. PloS one 12 (8) (2017)

Hong-Wen Deng.css-eqlu8i{font-size:small;padding-left:4px;} (Hongwen Deng)

Publication Activity (10 Years)

Top Topics

Top Venues

Hong-Wen Deng (Hongwen Deng)