James O J Davies (James Davies)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 16

Top Topics

Genome Wide Association

Top Venues

Nature communications

Nature genetics

Nature protocols

The EMBO journal

This page only lists publications with an associated author ORCID identifier.

Publications

Jim R Hughes, James O J Davies
Single-cell technologies meet Hi-C. Nature genetics 56 (8) (2024)
Jim R Hughes, James O J Davies
Single-cell technologies meet Hi-C. Nature genetics (2024)
Mohsin Badat, Ayesha Ejaz, Peng Hua, Siobhan Rice, Weijiao Zhang, Lance D Hentges, Christopher A Fisher, Nicholas D R Denny, Ron Schwessinger, Nirmani Yasara, Noemi B A Roy, Fadi Issa, Anindita Roy, Paul Telfer, Jim R Hughes, Sachith Mettananda, Douglas R Higgs, James O J Davies
Direct correction of haemoglobin E β-thalassaemia using base editors. Nature communications 14 (1) (2023)
Michela Maresca, Teun A H van den Brand, Hangpeng Li, Hans Teunissen, James O J Davies, Elzo de Wit
Pioneer activity distinguishes activating from non-activating SOX2 binding sites. The EMBO journal (2023)
Damien J Downes, Alastair L Smith, Magdalena A Karpińska, Taras Velychko, Kevin Christophe Rue-Albrecht, David Sims, Thomas A Milne, James O J Davies, A Marieke Oudelaar, Jim R Hughes
Author Correction: Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture. Nature protocols (2023)
Joseph C Hamley, Hangpeng Li, Nicholas D R Denny, Damien J Downes, James O J Davies
Determining chromatin architecture with Micro Capture-C. Nature protocols (2023)
Damien J Downes, Alastair L Smith, Magdalena A Karpińska, Taras Velychko, Kevin Christophe Rue-Albrecht, David Sims, Thomas A Milne, James O J Davies, A Marieke Oudelaar, Jim R Hughes
Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture. Nature protocols 17 (2) (2022)
Abrar Aljahani, Peng Hua, Magdalena A Karpińska, Kimberly Quililan, James O J Davies, A Marieke Oudelaar
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF. Nature communications 13 (1) (2022)
Damien J Downes, Amy R Cross, Peng Hua, Nigel A Roberts, Ron Schwessinger, Antony J Cutler, Altar M Munis, Jill M Brown, Olga Mielczarek, Carlos E de Andrea, Ignacio Melero, null null, Deborah R Gill, Stephen C Hyde, Julian C Knight, John A Todd, Stephen N Sansom, Fadi Issa, James O J Davies, Jim R Hughes
Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus. Nature genetics 53 (11) (2021)
Peng Hua, Mohsin Badat, Lars L P Hanssen, Lance D Hentges, Nicholas T Crump, Damien J Downes, Danuta M Jeziorska, A Marieke Oudelaar, Ron Schwessinger, Stephen Taylor, Thomas A Milne, Jim R Hughes, Douglas R Higgs, James O J Davies
Defining genome architecture at base-pair resolution. Nature 595 (7865) (2021)
Damien J Downes, Robert A Beagrie, Matthew E Gosden, Jelena Telenius, Stephanie J Carpenter, Lea Nussbaum, Sara De Ornellas, Martin Sergeant, Chris Q Eijsbouts, Ron Schwessinger, Jon Kerry, Nigel A Roberts, Arun Shivalingam, Afaf Helmy El-Sagheer, A Marieke Oudelaar, Tom Brown, Veronica J Buckle, James O J Davies, Jim R Hughes
High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale. Nature communications 12 (1) (2021)
Nicholas T Crump, Erica Ballabio, Laura Godfrey, Ross Thorne, Emmanouela Repapi, Jon Kerry, Marta Tapia, Peng Hua, Christoffer Lagerholm, Panagis Filippakopoulos, James O J Davies, Thomas A Milne
BET inhibition disrupts transcription but retains enhancer-promoter contact. Nature communications 12 (1) (2021)
Joke G van Bemmel, Rafael Galupa, Chris Gard, Nicolas Servant, Christel Picard, James O J Davies, Anthony James Szempruch, Yinxiu Zhan, Jan Jakub Żylicz, Elphѐge P Nora, Sonia Lameiras, Elzo de Wit, David Gentien, Sylvain Baulande, Luca Giorgetti, Mitchell Guttman, Jim R Hughes, Douglas R Higgs, Joost Gribnau, Edith Heard
The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist. Nature genetics 51 (6) (2019)
TingDong Yan, Wen Fong Ooi, Aditi Qamra, Alice Cheung, DongLiang Ma, Gopinath Meenakshi Sundaram, Chang Xu, Manjie Xing, LaiFong Poon, Jing Wang, Yan Ping Loh, Jess Hui Jie Ho, Joscelyn Jun Quan Ng, Muhammad Khairul Ramlee, Luay Aswad, Steven G Rozen, Sujoy Ghosh, Frederic A Bard, Prabha Sampath, Vinay Tergaonkar, James O J Davies, Jim R Hughes, Eyleen L K Goh, Xuezhi Bi, Melissa Jane Fullwood, Patrick Tan, Shang Li
HoxC5 and miR-615-3p target newly evolved genomic regions to repress hTERT and inhibit tumorigenesis. Nature communications 9 (1) (2018)
James O J Davies, Alice C Hart, Josu De La Fuente, BarbaraJ J Bain
Macrophage activation syndrome and post-transplant microangiopathy following haploidentical bone marrow transplantation for sickle cell anemia. American journal of hematology 93 (4) (2017)
James O J Davies, A Marieke Oudelaar, Douglas R Higgs, Jim R Hughes
How best to identify chromosomal interactions: a comparison of approaches. Nature methods 14 (2) (2017)