Jennifer E Phillips-Cremins

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 26

Top Topics

High Efficiency

Bipolar Disorder

Gene Expression

Top Venues

bioRxiv : the preprint server for biology

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Chuanbin Su, Keerthivasan Raanin Chandradoss, Thomas Malachowski, Ravi Boya, Han-Seul Ryu, Kristen J Brennand, Jennifer E Phillips-Cremins
MASTR-seq: Multiplexed Analysis of Short Tandem Repeats with sequencing. bioRxiv : the preprint server for biology (2024)
Chuanbin Su, Keerthivasan Raanin Chandradoss, Thomas Malachowski, Ravi Boya, Han-Seul Ryu, Kristen J Brennand, Jennifer E Phillips-Cremins
MASTR-seq: Multiplexed Analysis of Short Tandem Repeats with sequencing. bioRxiv : the preprint server for biology (2024)
Rohan Patel, Kenneth Pham, Harshini Chandrashekar, Jennifer E Phillips-Cremins
FISHnet: Detecting chromatin domains in single-cell sequential Oligopaints imaging data. bioRxiv : the preprint server for biology (2024)
Harshini Chandrashekar, Zoltan Simandi, Heesun Choi, Han-Seul Ryu, Abraham J Waldman, Alexandria Nikish, Srikar S Muppidi, Wanfeng Gong, Dominik Paquet, Jennifer E Phillips-Cremins
A multi-looping chromatin signature predicts dysregulated gene expression in neurons with familial Alzheimer's disease mutations. bioRxiv : the preprint server for biology (2024)
Rohan Patel, Kenneth Pham, Harshini Chandrashekar, Jennifer E Phillips-Cremins
FISHnet: Detecting chromatin domains in single-cell sequential Oligopaints imaging data. bioRxiv : the preprint server for biology (2024)
Chuanbin Su, Keerthivasan Raanin Chandradoss, Thomas Malachowski, Ravi Boya, Han-Seul Ryu, Kristen J Brennand, Jennifer E Phillips-Cremins
MASTR-seq: Multiplexed Analysis of Short Tandem Repeats with sequencing. bioRxiv : the preprint server for biology (2024)
Harshini Chandrashekar, Zoltan Simandi, Heesun Choi, Han-Seul Ryu, Abraham J Waldman, Alexandria Nikish, Srikar S Muppidi, Wanfeng Gong, Dominik Paquet, Jennifer E Phillips-Cremins
A multi-looping chromatin signature predicts dysregulated gene expression in neurons with familial Alzheimer's disease mutations. bioRxiv : the preprint server for biology (2024)
Katelyn R Titus, Zoltan Simandi, Harshini Chandrashekar, Dominik Paquet, Jennifer E Phillips-Cremins
Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation. bioRxiv : the preprint server for biology (2023)
Katelyn R Titus, Zoltan Simandi, Harshini Chandrashekar, Dominik Paquet, Jennifer E Phillips-Cremins
Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation. bioRxiv : the preprint server for biology (2023)
Katelyn R Titus, Zoltan Simandi, Harshini Chandrashekar, Dominik Paquet, Jennifer E Phillips-Cremins
Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation. bioRxiv : the preprint server for biology (2023)
Katelyn R Titus, Zoltan Simandi, Harshini Chandrashekar, Dominik Paquet, Jennifer E Phillips-Cremins
Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation. bioRxiv : the preprint server for biology (2023)
Katelyn R Titus, Zoltan Simandi, Harshini Chandrashekar, Dominik Paquet, Jennifer E Phillips-Cremins
Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation. bioRxiv : the preprint server for biology (2023)
Daniel S Park, Son C Nguyen, Randi Isenhart, Parisha P Shah, Wonho Kim, R Jordan Barnett, Aditi Chandra, Jennifer M Luppino, Jailynn Harke, May Wai, Patrick J Walsh, Richard J Abdill, Rachel Yang, Yemin Lan, Sora Yoon, Rebecca Yunker, Masato T Kanemaki, Golnaz Vahedi, Jennifer E Phillips-Cremins, Rajan Jain, Eric F Joyce
High-throughput Oligopaint screen identifies druggable 3D genome regulators. Nature (2023)
Kiran Girdhar, Gabriel E Hoffman, Jaroslav Bendl, Samir Rahman, Pengfei Dong, Will Liao, Mads E Hauberg, Laura Sloofman, Leanne Brown, Olivia Devillers, Bibi S Kassim, Jennifer R Wiseman, Royce Park, Elizabeth Zharovsky, Rivky Jacobov, Elie Flatow, Alexey Kozlenkov, Thomas Gilgenast, Jessica S Johnson, Lizette Couto, Mette A Peters, Jennifer E Phillips-Cremins, Chang-Gyu Hahn, Raquel E Gur, Carol A Tamminga, David A Lewis, Vahram Haroutunian, null null, Stella Dracheva, Barbara K Lipska, Stefano Marenco, Marija Kundakovic, John F Fullard, Yan Jiang, Panagiotis Roussos, Schahram Akbarian
Chromatin domain alterations linked to 3D genome organization in a large cohort of schizophrenia and bipolar disorder brains. Nature neuroscience 25 (4) (2022)
Daniel J Emerson, Peiyao A Zhao, Ashley L Cook, R Jordan Barnett, Kyle N Klein, Dalila Saulebekova, Chunmin Ge, Linda Zhou, Zoltan Simandi, Miriam K Minsk, Katelyn R Titus, Weitao Wang, Wanfeng Gong, Di Zhang, Liyan Yang, Sergey V Venev, Johan H Gibcus, Hongbo Yang, Takayo Sasaki, Masato T Kanemaki, Feng Yue, Job Dekker, Chun-Long Chen, David M Gilbert, Jennifer E Phillips-Cremins
Cohesin-mediated loop anchors confine the locations of human replication origins. Nature 606 (7915) (2022)
Deborah Y Kwon, Bing Xu, Peng Hu, Jerry Yingtao Zhao, Jonathan A Beagan, Jonathan H Nofziger, Yue Cui, Jennifer E Phillips-Cremins, Julie A Blendy, Hao Wu, Zhaolan Zhou
Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in mice. Nature communications 13 (1) (2022)
Lesly Calderón, Felix Daniel Weiss, Jonathan A Beagan, Marta S Oliveira, Radina Georgieva, Yi-Fang Wang, Thomas S Carroll, Gopuraja Dharmalingam, Wanfeng Gong, Kyoko Tossell, Vincenzo de Paola, Chad Whilding, Mark A Ungless, Amanda G Fisher, Jennifer E Phillips-Cremins, Matthias Merkenschlager
Cohesin-dependence of neuronal gene expression relates to chromatin loop length. eLife 11 (2022)
Lindsey R Fernandez, Thomas G Gilgenast, Jennifer E Phillips-Cremins
3DeFDR: statistical methods for identifying cell type-specific looping interactions in 5C and Hi-C data. Genome biology 21 (1) (2020)
Yang Wu, Ting Qi, Huanwei Wang, Futao Zhang, Zhili Zheng, Jennifer E Phillips-Cremins, Ian J Deary, Allan F McRae, Naomi R Wray, Jian Zeng, Jian Yang
Promoter-anchored chromatin interactions predicted from genetic analysis of epigenomic data. Nature communications 11 (1) (2020)
Jonathan A Beagan, Jennifer E Phillips-Cremins
On the existence and functionality of topologically associating domains. Nature genetics 52 (1) (2020)
Di Zhang, Peng Huang, Malini Sharma, Cheryl A Keller, Belinda M Giardine, Haoyue Zhang, Thomas G Gilgenast, Jennifer E Phillips-Cremins, Ross Cameron Hardison, Gerd A Blobel
Alteration of genome folding via contact domain boundary insertion. Nature genetics 52 (10) (2020)
Jonathan A Beagan, Elissa D Pastuzyn, Lindsey R Fernandez, Michael H Guo, Kelly Feng, Katelyn R Titus, Harshini Chandrashekar, Jason D Shepherd, Jennifer E Phillips-Cremins
Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression. Nature neuroscience 23 (6) (2020)
Harvey Huang, Sunnia T Chen, Katelyn R Titus, Daniel J Emerson, Danielle S Bassett, Jennifer E Phillips-Cremins
A subset of topologically associating domains fold into mesoscale core-periphery networks. Scientific reports 9 (1) (2019)
Ji Hun Kim, Mayuri Rege, Jacqueline Valeri, Margaret C Dunagin, Aryeh Metzger, Katelyn R Titus, Thomas G Gilgenast, Wanfeng Gong, Jonathan A Beagan, Arjun Raj, Jennifer E Phillips-Cremins
LADL: light-activated dynamic looping for endogenous gene expression control. Nature methods 16 (7) (2019)
Heidi K Norton, Daniel J Emerson, Harvey Huang, Jesi Kim, Katelyn R Titus, Shi Gu, Danielle S Bassett, Jennifer E Phillips-Cremins
Detecting hierarchical genome folding with network modularity. Nature methods 15 (2) (2018)
Heidi K Norton, Jennifer E Phillips-Cremins
Crossed wires: 3D genome misfolding in human disease. The Journal of cell biology 216 (11) (2017)